New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	786696 =	NA (NA)	6 (0.070)	3/166	NT	NA	intergenic (+11/+147)	aroG/gpmA	3‑deoxy‑D‑arabino‑heptulosonate‑7‑phosphate synthase, phenylalanine repressible/phosphoglyceromutase 1
	?	NC_000913	786726 =	NA (NA)					intergenic (+41/+117)	aroG/gpmA	3‑deoxy‑D‑arabino‑heptulosonate‑7‑phosphate synthase, phenylalanine repressible/phosphoglyceromutase 1

GGCTTTTTTGTTGCTAACAATGGAGCACATTGCCTGATGCGACGCTGCGCGACTTATCAGGCCTGTGGTGATTCATCGGATACGCCACTCTGACGGCGCATCCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/786800‑786696 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccgaTGAATCACCACAGGCCTGATAAGTCGCGCAGCGTCGCATCAGGCAATGTGCTCCATTGTTAGCAACAAAAAAGCCGACTCACTTGCAGTCGGCTTTC  >  NC_000913/786726‑786822                                                                                                                                                                                                            GGCTTTTTTGTTGCTAACAATGGAGCACATTGCCTGATGCGACGCTGCGCGACTTATCAGGCCTGTGGTGATTCATCGGATACGCCACTCTGACGGCGCA                                                                                                        <  1:1566028/100‑1  GCTTTTTTGTTGCTAACAATGGAGCACATTGCCTGATGCGACGCTGCGCGACTTATCAGGCCTGTGGTGATTCATCGGATACGCCACTCTGACGGCGCAT                                                                                                       >  1:1709089/1‑100   cgTTTTTGTTGCTAACAATGGAGCACATTGCCTGATGCGACGCTGCGCGACTTATCAGGCCTGTGGTGATTCATCGGATACGCCACTCTGACGGCGCATC                                                                                                      <  2:799961/98‑1   CTTTTTTGTTGCTAACAATGGAGCACATTGCCTGATGCGACGCTGCGCGACTTATCAGGCCTGTGGTGATTCATCGGATACGCCACTCTGACGGCGCATC                                                                                                      <  1:661534/100‑1   CTTTTTTGTTGCTAACAATGGAGCACATTGCCTGATGCGACGCTGCGCGACTTATCAGGCCTGTGGTGATTCATCGGATACGCCACTCTGACGGCGCATC                                                                                                      >  1:457066/1‑100    TTTTTTGTTGCTAACAATGGAGCACATTGCCTGATGCGACGCTGCGCGACTTATCAGGCCTGTGGTGATTCATCGGATACGCCACTCTGACGGCGCATCC                                                                                                     <  1:2100594/100‑1    TTTTTTGTTGCTAACAATGGAGCACATTGCCTGATGCGACGCTGCGCGACTTATCAGGCCTGTGGTGATTCATCGGATACGCCACTCTGACGGCGCATCC                                                                                                     <  2:1105499/100‑1     TTTTTGTTGCTAACAATGGAGCACATTGCCTGATGCGACGCTGCGCGACTTATCAGGCCTGTGGTGATTCATCGGATACGCCACTCTGACGGCGCATCCG                                                                                                    <  2:1792688/100‑1      TTTTGTTGCTAACAATGGAGCACATTGCCTGATGCGACGCTGCGCGACTTATCAGGCCTGTGGTGATTCATCGGATACGCCACTCTGACGGCGCATCCGA                                                                                                   <  1:587212/100‑1                                                                       ATTCATCGGATACGCCACTCTGACGGCGCATCCGATGAATCACCACAGGCCTGATAAGTCGCGCAGCGTCGCATCAGGCAATGTGCTCCATTGTTAGCAA                                  >  1:783404/1‑100                                                                          CATCGGATACGCCACTCTGACGGCGCATCCGATGAATCACCACAGGCCTGATAAGTCGCGCAGCGTCGCATCAGGCAATGTGCTCCATTGTTAGCAACAA                               >  2:1273899/1‑100                                                                          CATCGGATACGCCACTCTGACGGCGCATCCGATGAATCACCACAGGCCTGATAAGTCGCGCAGCGTCGCATCAGGCAATGTGCTCCATTGTTAGCAACAA                               >  1:1245563/1‑100                                                                           ATCGGATACGCCACTCTGACGGCGCATCCGATGAATCACCACAGGCCTGATAAGTCGCGCAGCGTCGCATCAGGCAATGTGCTCCATTGTTAGCAACAAA                              >  1:1003019/1‑100                                                                           ATCGGATACGCCACTCTGACGGCGCATCCGATGAATCACCACAGGCCTGATAAGTCGCGCAGCGTCGCATCAGGCAATGTGCTCCATTGTTAGCAACAAA                              >  2:2253324/1‑100                                                                           ATCGGATACGCCACTCTGACGGCGCATCCGATGAATAACCACAGGCCTGATAAGTCGCGCAGCGTCGCATCAGGCAATGTGCTCCATTGTTAGCAACAA                               >  1:2103916/1‑99                                                                                                    ATCCGATGAATCACCACAGGCCTGATAAGTCGCGCAGCGTCGCATCAGGCAATGTGCTCCATTGTTAGCAACAAAAAAGCCGACTCACTTGCAGTCGGCT     <  1:269950/100‑1                                                                                                     tgCGATGGAGCACCACAGGCCTAATATGTCGCGAAGCGTCGCATCAGGCAATGTGCTCCATTGTTAGCAACAAAAAAGCCGACGCACTTGCAGTCG        <  2:1132596/94‑1                                                                                                       CGATGAATCACCACAGGCCTGATAAGTCGCGCAGCGTCGCATCAGGCAATGTGCTCCATTGTTAGCAACAAAAAAGCCGACTCACTTGCAGTCGGCTTTC  >  1:1984499/1‑100                                                                                                       CGATGAATCACCACAGGCCTGATAAGTCGCGCAGCGTCGCATCAGGCAATGTGCTCCATTGTTAGCAACAAAAAAGCCGACTCACTTGCAGTCGGCTTTC  <  1:706770/100‑1                                                                                                       CGATGAATCACCACAGGCCTGATAAGTCGCGCAGCGTCGCATCAGGCAATGTGCTCCATTGTTAGCAACAAAAAAGCCGACTCACTTGCAGTCGGCTTTC  <  2:362690/100‑1                                                                                                       CGATGAATCACCACAGGCCTGATAAGTCGCACACCGTCGCATCAGGCAATGTGCTCCATTGTTAGCAACAAAAAAGCCGACTCACTTGCCGTCGGCTTTC  >  2:1546971/1‑100                                                                                                                                                                                                            GGCTTTTTTGTTGCTAACAATGGAGCACATTGCCTGATGCGACGCTGCGCGACTTATCAGGCCTGTGGTGATTCATCGGATACGCCACTCTGACGGCGCATCCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/786800‑786696 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccgaTGAATCACCACAGGCCTGATAAGTCGCGCAGCGTCGCATCAGGCAATGTGCTCCATTGTTAGCAACAAAAAAGCCGACTCACTTGCAGTCGGCTTTC  >  NC_000913/786726‑786822

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.