New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3163644 =	NA (NA)	3 (0.040)	3/160	NT	NA	noncoding (1/30 nt)	REP223 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP223 (repetitive extragenic palindromic) element; contains 1 REP sequences
	?	NC_000913	3163674 =	NA (NA)					intergenic (‑193/+41)	plsC/parC	1‑acyl‑sn‑glycerol‑3‑phosphate acyltransferase/DNA topoisomerase IV, subunit A

CCTCGCCGTGCCAGCAGCGGTGATAGCGAAGAGTAATATGCCGGGGAGGGCGCTGTTTCCTCCCGCTTGCAAGGAACGCCGGATGAAACGTTAAGTCGTCATCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/3163750‑3163644 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcatccggcGTTCCTTGCAAGCGGGAGGAAACAGCGCCCTCCCCGGCATATTACTCTTCGCTATCACCGCTGCTGGCACGGCGAGGAGAGTCGATCTCAACACGATCG  >  NC_000913/3163674‑3163772                                                                                                                                                                                                                CCTCGCCGTGCCAGCAGCGGTGATAGCGAAGAGTAATATGCCGGGGAGGGCGCTGTTTCCTCCCGCTTGCAAGGAACGCCGGATGAAACGTTAAGTCGTC                                                                                                            >  2:886511/1‑100  CTCGCCGTGCCAGCAGCGGTGATAGCGAAGAGTAATATGCCGGGGAGGGCGCTGTTTCCTCCCGCTTGCAAGGAACGCCGGATGAAACGTTAAGTCGTCA                                                                                                           >  1:1295613/1‑100  CTCGCCGTGCCAGCAGCGGTGATAGCGAAGAGTAATATGCCGGGGAGGGCGCTGTTTCCTCCCGCTTGCAAGGAACGCCGGATGAAACGTTAAGTCGTCA                                                                                                           >  1:162865/1‑100     GCCGTGCCAGCAGCGGTGATAGCGAAGAGTAATATGCCGGGGAGGGCGCTGTTTCCTCCCGCTTGCAAGGAACGCCGGATGAAACGTTAAGTCGTCATCC                                                                                                        <  1:601022/100‑1      CCGTGCCAGCAGCGGTGATAGCGAAGAGTAATATGCCGGGGAGGGCGCTGTTTCCTCCCGCTTGCAAGGAACGCCGGATGAAACGTTAAGTCGTCATCCG                                                                                                       <  1:2096879/100‑1       CGTGCCAGCAGCGGTGATAGCGAAGAGTAATATGCCGGGGAGGGCGCTGTTTCCTCCCGCTTGCAAGGAACGCCGGATGAAACGTTAAGTCGTCATCCGG                                                                                                      <  1:1339299/100‑1       CGTGCCAGCAGCGGTGATAGCGAAGAGTAATATGCCGGGGAGGGCGCTGTTTCCTCCCGCTTGCAAGGAACGCCGGATGAAACGTTAAGTCGTCATCCGG                                                                                                      >  2:2247189/1‑100        GTGCCAGCAGCGGTGATAGCGAAGAGTAATATGCCGGGGAGGGCGCTGTTTCCTCCCGCTTGCAAGGAACGCCGGATGAAACGTTAAGTCGTCATCCGGC                                                                                                     >  1:1677214/1‑100        GTGCCAGCAGCGGTGATAGCGAAGAGTAATATGCCGGGGAGGGCGCTGTTTCCTCCCGCTTGCAAGGAACGCCGGATGAAACGTTAAGTCGTCATCCGGC                                                                                                     >  1:1677295/1‑100        GTGCCAGCAGCGGTGATAGCGAAGAGTAATATGCCGGGGAGGGCGCTGTTTCCTCCCGCTTGCAAGGAACGCCGGATGAAACGTTAAGTCGTCATCCGGC                                                                                                     <  2:1742985/100‑1                                                                            ACGCCGGATGAAACGTTAAGTCGTCATCCGGCGTTCCTTGCAAGCGGGAGGAAACAGCGCCCTCCCCGGCATATTACTCTTCGCTATCACCGCTGCTGGC                                 >  1:878243/1‑100                                                                              GCCGGATGAAACGTTAAGTCGTCATCCGGCGTTCCTTGCAAGCGGGAGGAAACAGCGCCCTCCCCGGCATATTACTCTTCGCTATCACCGCTGCTGGCAC                               >  1:1725397/1‑100                                                                               CCGGATGAAACGTTAAGTCGTCATCCGGCGTTCCTTGCAAGCGGGAGGAAACAGCGCCCTCCCCGGCATATTACTCTTCGCTATCACCGCTGCTGGCACG                              >  2:1341237/1‑100                                                                                               cgtttcgcCCGGCGTTCCTTGCAAGCGGTAGGAAACAGCGCCCTCCCCGGCATATTACTCCTCGCTATCACCGCTGCTTGCACGGCGAGGAGAGTCGATC              <  2:950025/92‑1                                                                                                  tcccTCCGGCGTTCCATGCAAGCGGGAGGAAACAGCGCCCTCCCCGGCATATTACTCTGCGCTATCACCGCTGCTGGCACGGCGAGGAGAGTCGATCTCA           <  2:1527829/96‑1                                                                                                   TCATCCGGCGTTCCTTGCAAGCGGGAGGAAACAGCGCCCTCCCCGGCATATTACTCTTCGCTATCACCGCTGCTGGCACGGCGAGGAGAGTCGATCTCAA          >  2:1844561/1‑100                                                                                                     ATCCGGCGTTCCTTGCAAGCGGGAGGAAACAGCGCCCTCCCCGGCATATTACTCTTCGCTATCACCGCTGCTGGCACGGCGAGGAGAGTCGATCTCAACA        >  2:274675/1‑100                                                                                                     ATCCGGCGTTCCTTGCAAGCGGGAGGAAACAGCGCCCTCCCCGGCATATTACTCTTCGCTATCACCGCTGCTGGCACGGCGAGGAGAGTCGATCTCAAC         >  1:381624/1‑99                                                                                                     ATCCGGCGTTCCTTGCAAGCGGGAGGAAACAGCGCCCTCCCCGGCATATTACTCTTCGCTATCACCGCTGCTGGCACGGCGAGGAGAGGCGATCTCAACA        >  1:344684/1‑100                                                                                                      TCCGGCGTTCCTTGCAAGCGGGAGGAAACAGCGCCCTCCCCGGCATATTACTCTTCGCTATCACCGCTGCTGGCACGGCGAGGAGAGTCGATCTCAACAC       <  1:575550/100‑1                                                                                                        CGGCGTTCCTTGCAAGCGGGAGGAAACAGCGCCCTCCCCGGCATATTACTCTTCGCTATCACCGCTGCTGGCACGGCGAGGAGAGTCGACCTCAACACGA     >  1:1322391/1‑100                                                                                                           CGTTCCTTGCAAGCGGGAGGAAACAGCGCCCTCCCCGGCATATTACTCTTCGCTATCACCGCTGCTGGCACGGCGAGGAGAGTCGATCTCAACACGATCG  <  2:375902/100‑1                                                                                                                                                                                                                CCTCGCCGTGCCAGCAGCGGTGATAGCGAAGAGTAATATGCCGGGGAGGGCGCTGTTTCCTCCCGCTTGCAAGGAACGCCGGATGAAACGTTAAGTCGTCATCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/3163750‑3163644 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcatccggcGTTCCTTGCAAGCGGGAGGAAACAGCGCCCTCCCCGGCATATTACTCTTCGCTATCACCGCTGCTGGCACGGCGAGGAGAGTCGATCTCAACACGATCG  >  NC_000913/3163674‑3163772

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.