New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 3546222 =NA (NA)5 (0.060) 3/166 NT NA noncoding (1/36 nt) REP253 (repetitive extragenic palindromic) element; contains 1 REP sequences REP253 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913 3546254 = NA (NA)noncoding (33/36 nt) REP253 (repetitive extragenic palindromic) element; contains 1 REP sequences REP253 (repetitive extragenic palindromic) element; contains 1 REP sequences

Only 100 of 124 total aligned reads displayed.

TGCTGAACGAATTCCCGGAGCTGAAAGGTGTGCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGTTTCCCCGCG  >  NC_000913/3546123‑3546321
                                                                                                   |                                                                                                   
tgctgAACGAATTCCCGGAGCTGAAAGGTGTGCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTg                                                                                                     <  1:582683/100‑1 (MQ=255)
aatttaaattatgagaggttggtcatattatcgcggggaaacgaaccgaggatttgacaaagcaatgctgcgccaacgtctggcacatgttcaacgtagg                                                                                                     >  1:2263647‑M1/100‑100 (MQ=255)
aatttaaattatgagaggttggtcatattatcgcggggaaacgaaccgaggatttgacaaagcaatgctgcgccaacgtctggcacatgttcaacgtagg                                                                                                     <  2:1737915‑M1/1‑1 (MQ=255)
aatttaaattatgagaggttggtcatattatcgcggggaaacgaaccgaggatttgacaaagcaatgctgcgccaacgtctggcacatgttcaacgtagg                                                                                                     >  1:1385393‑M1/100‑100 (MQ=255)
aatttaaattatgagaggttggtcatattatcgcggggaaacgaaccgaggatttgacaaagcaatgctgcgccaacgtctggcacatgttcaacgtagg                                                                                                     >  1:1488700‑M1/100‑100 (MQ=255)
 atttaacttatgagaggttggtcatattctcgcggggtaacgcaccgaggatttgacaaagcaatgctgcgccaacgtctggcacatgttcaacgtagGc                                                                                                    <  2:500706‑M1/2‑1 (MQ=255)
  tttaaattatgagaggttggtcatattatcgcggggaaacgaaccgaggatttgacaaagcaatgctgcgccaacgtctggcacatgttcaacgtagGcc                                                                                                   <  1:585563‑M1/3‑1 (MQ=255)
   tgAACGAATTCCCGGAGCTGAAAGGTGTGCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGccc                                                                                                  >  1:1824560/1‑100 (MQ=255)
   tgAACGAATTCCCGGAGCTGAAAGGTGTGCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGccc                                                                                                  <  2:1863577/100‑1 (MQ=255)
   tgAACGAATTCCCGGAGCTGAAAGGTGTGCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGccc                                                                                                  <  2:1909267/100‑1 (MQ=255)
    taaattatgagaggttggtcatattatcgcggggaaacgaaccgaggatttgacaaagcaatgctgcgccaacgtctggcacatgttcaacgtagGCCCg                                                                                                 >  2:2323882‑M1/96‑100 (MQ=255)
    gAACGAATTCCCGGAGCTGAAAGGTGTGCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCg                                                                                                 >  2:1069385/1‑100 (MQ=255)
    gAACGAATTCCCGGAGCTGAAAGGTGTGCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCg                                                                                                 >  1:139055/1‑100 (MQ=255)
      aCGAATTCCCGGAGCTGAAAGGTGTGCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGAt                                                                                               >  1:1442011/1‑100 (MQ=255)
       cGAATTCCCGGAGCTGAAAGGTGTGCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATg                                                                                              >  1:1894997/1‑100 (MQ=255)
       cGAATTCCCGGAGCTGAAAGGTGTGCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATg                                                                                              >  1:473120/1‑100 (MQ=255)
       cGAATTCCCGGAGCTGAAAGGTGTGCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATg                                                                                              <  1:796197/100‑1 (MQ=255)
           ttCCCGGAGCTGAAAGGTGTGCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGAc                                                                                          <  1:1125276/100‑1 (MQ=255)
             cccGGAGCTGAAAGGTGTGCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGc                                                                                        >  1:2333788/1‑100 (MQ=255)
                 gAGCTGAAAGGTGTGCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTaaa                                                                                    >  2:1881225/1‑100 (MQ=255)
                    cTGAAAGGTGTGCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCg                                                                                 <  1:33650/100‑1 (MQ=255)
                     tGAAAGGTGTGCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGt                                                                                >  2:140650/1‑100 (MQ=255)
                     tGAAAGGTGTGCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGt                                                                                >  1:1891930/1‑100 (MQ=255)
                       aaaGGTGTGCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCa                                                                              <  2:2013949/100‑1 (MQ=255)
                           gtgtGCGCGATCTCACCGAACGACAGCGCGGCGAACACTCCTACTACTAAGTTATCCCGGCTTTTGGAGATTGCCCGATGCGACGCTAAAGCGTCATTTc                                                                          <  1:1039920/100‑1 (MQ=255)
                            tgtgCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTTTAGCGTcgcatcn                                                                         <  1:545207/100‑7 (MQ=255)
                             gtgCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCgg                                                                        <  2:678108/100‑1 (MQ=255)
                              tgCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGAAATGACGCTTTAGCGTcgcatcggg                                                                       <  1:698625/100‑9 (MQ=37)
                               gcgcGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGc                                                                      >  1:59632/1‑100 (MQ=255)
                               gcgcGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGc                                                                      >  2:370012/1‑100 (MQ=255)
                               cgcggggaaacgaaccgaggatttgacaaagcaatgctgcgccaacgtctggcacatgttcaacgtagGCCCGATGCGACGCTAAAGCGTCATTTCGGGc                                                                      >  2:1736570‑M1/69‑100 (MQ=255)
                                gcggggaaacgaaccgaggatttgacaaagcaatgctgcgccaacgtctggcacatgttcaacgtagGCCCGATGCGACGCTAAAGCGTCATTTCGGGcc                                                                     >  1:892000‑M1/68‑100 (MQ=255)
                                gcggggaaacgaaccgaggatttgacaaagcaatgctgcgccaacgtctggcacatgttcaacgtagGCCCGATGCGACGCTAAAGCGTCATTTCGGGcc                                                                     >  2:924790‑M1/68‑100 (MQ=255)
                                gcggggaaacgaaccgaggatttgacaaagcaatgctgcgccaacgtctggcacatgttcaacgtagGCCCGATGCGACGCTAAAGCGTCATTTCGGGcc                                                                     >  1:49995‑M1/68‑100 (MQ=255)
                                cgcgATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGcc                                                                     <  1:205120/100‑1 (MQ=255)
                                 gcgATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGAAATGACGCTTTAGCGTcgcatcgggc                                                                      <  2:653214/98‑10 (MQ=25)
                                  cgATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTa                                                                   >  1:1477136/1‑100 (MQ=255)
                                  cgATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTa                                                                   >  1:1682934/1‑100 (MQ=255)
                                     tctcACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGt                                                                >  2:1716532/1‑100 (MQ=255)
                                      ctcACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGtt                                                               <  2:949771/100‑1 (MQ=255)
                                      ctcACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGtt                                                               >  1:2027488/1‑100 (MQ=255)
                                       tcACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTg                                                              <  2:142555/100‑1 (MQ=255)
                                        cACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGa                                                             >  1:1751709/1‑100 (MQ=255)
                                        cACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGa                                                             >  2:281006/1‑100 (MQ=255)
                                          cggAACACCAGCGCGGAGAAAAATCATACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAAc                                                           >  2:575139/3‑100 (MQ=255)
                                          ccGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAAc                                                           <  1:205023/100‑1 (MQ=255)
                                          ccGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAAc                                                           <  2:1276895/100‑1 (MQ=255)
                                           cGAACACCAGCGCGGCGAACACTCCTTCTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACa                                                          <  2:1162789/100‑1 (MQ=255)
                                             aaCACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACAtg                                                        >  1:841818/1‑100 (MQ=255)
                                               cacCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACAtgtg                                                      <  1:813334/100‑1 (MQ=255)
                                                   aGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAg                                                  >  1:1773562/1‑100 (MQ=255)
                                                      gcggcgAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGatg                                               <  1:1588495/100‑3 (MQ=255)
                                                         gcgAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTg                                            >  2:452343/1‑100 (MQ=255)
                                                          cgAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTgg                                           <  1:370015/100‑1 (MQ=255)
                                                           gAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGgc                                          <  2:1645575/100‑1 (MQ=255)
                                                           gAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGgc                                          >  1:423419/1‑100 (MQ=255)
                                                            aaCACGCCTACTACGAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTGCGGGCCTACGTTGAACATGTGCCAGACGTTGgc                                          <  2:1441235/99‑1 (MQ=255)
                                                             acacTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGgcgc                                        >  2:652328/1‑100 (MQ=255)
                                                             acacTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGgcgc                                        <  1:513654/100‑1 (MQ=255)
                                                              cacTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATTCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGgcgc                                        <  2:283434/99‑1 (MQ=255)
                                                              cacTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCgca                                       >  2:2182301/1‑100 (MQ=255)
                                                               acTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCgcag                                      >  1:1063057/1‑100 (MQ=255)
                                                                cTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCgcagc                                     <  2:598309/100‑1 (MQ=255)
                                                                  ccTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCAt                                   >  1:827122/1‑100 (MQ=255)
                                                                   ctactactaAGTTATCCCCTCTTTTGTAGAGTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCAtt                                  >  2:1544439/1‑100 (MQ=255)
                                                                     actactaAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGc                                <  1:171227/100‑1 (MQ=255)
                                                                     actactaAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGc                                <  1:1881238/100‑1 (MQ=255)
                                                                     actactaAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGc                                <  1:467899/100‑1 (MQ=255)
                                                                      ctactaAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAACGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCt                               >  2:2256024/1‑100 (MQ=255)
                                                                      ctactaAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCt                               >  1:1489737/1‑100 (MQ=255)
                                                                       tactaAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCtt                              >  1:772446/1‑100 (MQ=255)
                                                                        actaAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGCACATGTGCCCGACGTTGGCGCCGCATTGc                                >  2:1621349/1‑97 (MQ=255)
                                                                        actaAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCttt                             <  2:59632/100‑1 (MQ=255)
                                                                        actaAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCttt                             >  2:1622928/1‑100 (MQ=255)
                                                                         ctaAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTg                            <  1:507351/100‑1 (MQ=255)
                                                                         ctaAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTg                            >  1:2228655/1‑100 (MQ=255)
                                                                         ctaAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTg                            >  2:2316120/1‑100 (MQ=255)
                                                                            aGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCa                         >  1:865638/1‑100 (MQ=255)
                                                                                 tCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATcc                    >  2:1803996/1‑100 (MQ=255)
                                                                                   cccTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTc                  <  1:1143250/100‑1 (MQ=255)
                                                                                   cccTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTc                  <  1:1781112/100‑1 (MQ=255)
                                                                                   cccTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTc                  >  2:903398/1‑100 (MQ=255)
                                                                                     ctctTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCgg                <  1:872890/100‑1 (MQ=255)
                                                                                      tctTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGt               >  1:478825/1‑100 (MQ=255)
                                                                                      tctTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTCTCAAATCCTCgct               <  1:1597813/100‑3 (MQ=255)
                                                                                       ctTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGtt              >  2:1871463/1‑100 (MQ=255)
                                                                                         tttGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCg            >  2:2008442/1‑100 (MQ=255)
                                                                                          ttGTAGATTGCCCAATGCGACGCTAAAGCGTCATTTCGCGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGt           >  2:1454847/1‑100 (MQ=255)
                                                                                           tGTAGATTGCCCGATGCGACGCTAAAGCGTCCTTTCGGGCCTACGTTGAACAGGTGCCAGACGTTGGCGCAGCCTTGCTTTGTCAAATCCTCGGTTCg            >  2:679246/1‑98 (MQ=255)
                                                                                           tGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGTGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGtt          >  1:490699/1‑100 (MQ=255)
                                                                                           tGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGtt          <  1:1362150/100‑1 (MQ=255)
                                                                                             tAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGTTTc        <  1:281008/100‑1 (MQ=255)
                                                                                               gATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGTTTccc      <  2:2291421/100‑1 (MQ=255)
                                                                                               gATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGTTTccc      <  2:1223063/100‑1 (MQ=255)
                                                                                                aTTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGTTTcccc     <  2:2027473/100‑1 (MQ=255)
                                                                                                aTTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGTTTcccc     >  1:1294495/1‑100 (MQ=255)
                                                                                                 ttGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGTTTCCCcg    <  2:819150/100‑1 (MQ=255)
                                                                                                 ttGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGTTTCCCcg    <  2:1442003/100‑1 (MQ=255)
                                                                                                   GCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGTTTCCCcgcg  <  1:1737927‑M1/100‑1 (MQ=255)
                                                                                                   GCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGTTTCCCcgcg  <  1:1168042‑M1/100‑1 (MQ=255)
                                                                                                   |                                                                                                   
TGCTGAACGAATTCCCGGAGCTGAAAGGTGTGCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGTTTCCCCGCG  >  NC_000913/3546123‑3546321

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.