New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 3620116NA (NA)3 (0.040) 3/166 NT 100% coding (925/4236 nt) rhsB Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
?NC_000913 = 3620152 0 (0.000)coding (961/4236 nt) rhsB Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor

ACAACGGCATCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCACGCGGCGAACTGGCGGTGGTGTATGACCGTAGTGGCAAACAGGTGCGCAGCTTTACTTACGATGATAAA  >  NC_000913/3620048‑3620214
                                                                    |                                                                                                  
aCAACGGCATCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCACG                                                                     <  2:584729‑M2/100‑1 (MQ=255)
 cAACGGCATCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCACGC                                                                    <  1:761997‑M2/100‑1 (MQ=255)
 cAACGGCATCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCACGC                                                                    <  1:965026‑M2/100‑1 (MQ=255)
 cAACGGCATCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCACGC                                                                    <  1:1108504‑M2/100‑1 (MQ=255)
 cAACGGCATCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCACGC                                                                    <  2:188629‑M2/100‑1 (MQ=255)
   aCGGCATCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCACGCGG                                                                  <  1:1799549‑M2/100‑1 (MQ=255)
   aCGGCATCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCACGCGG                                                                  <  2:1528558‑M2/100‑1 (MQ=255)
   aCGGCATCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCACGCGG                                                                  <  2:62319‑M2/100‑1 (MQ=255)
   aCGGCATCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCACGC                                                                    <  2:1211084‑M2/98‑1 (MQ=255)
    cGGCATCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGAATACCCGGAGAATTTACCTGTCGCGCCGCTGGTGCGCTATGGCTGGACGCCACGCGGC                                                                 >  2:1256314‑M2/1‑100 (MQ=255)
    cGGCATCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCACGCGGC                                                                 >  1:2001603‑M2/1‑100 (MQ=255)
    cGGCATCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCACGCGGC                                                                 >  2:158057‑M2/1‑100 (MQ=255)
    cGGCATCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCACGCGGC                                                                 >  2:1938250‑M2/1‑100 (MQ=255)
     ggCATCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCACGCGGCG                                                                >  2:411977‑M2/1‑100 (MQ=255)
                                                                 gccgcgccgcTGGTGCGCTATGGCTGGACGCCACGCGGCGcggcaggtaaattctccgggtattccgggtcgtgcgtcagccacacggcagacagacgga    <  2:487735‑M2/100‑61 (MQ=255)
                                                                  ccgcgccgcTGGTGCGCTATGGCTGGACGCCACGCGGCGcggcaggcaaattccccggctattccgggtcgtgcgtcagccccacggcagacagac       <  2:1574089‑M2/96‑58 (MQ=255)
                                                                   cgcgccgcTGGTGCGCTATGGCTGGACGCCACGCGGCGcggcaggtaaattctccgggtattccgggtcgtgcgtcagccacacggcagacagacggatg  <  2:976591‑M2/100‑63 (MQ=255)
                                                                    |                                                                                                  
ACAACGGCATCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCACGCGGCGAACTGGCGGTGGTGTATGACCGTAGTGGCAAACAGGTGCGCAGCTTTACTTACGATGATAAA  >  NC_000913/3620048‑3620214

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.