| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 226704 = | NA (NA) | 4 (0.050) | 4/170 | NT | NA | noncoding (946/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | NC_000913 | 226730 = | NA (NA) | noncoding (972/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon | |||||
TCATCTCCGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACACACGGCGGGTGCTAACGTCCGTCGTGAAGAGGGAAACAACCCAGACCGCCAGCTAAGGTCCCAAAGTCATGGTTAAGTGGGAAACGATGTGGGAAGGCCC > NC_000913/226605‑226803 | tCATCTCCGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACAC > 2:959741‑M1/1‑100 (MQ=255)tCATCTCCGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACAC > 2:1476532‑M1/1‑100 (MQ=255)tCATCTCCGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACAC < 2:728481‑M1/100‑1 (MQ=255)tCATCTCCGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCCGAGCATGTTATCACGGGAGACAC > 2:320817‑M1/1‑100 (MQ=255) caactccggGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACACA < 1:885322‑M1/97‑1 (MQ=255) cATCTCCGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGCATGTTATCACGGGAGACACA > 1:458723‑M1/1‑100 (MQ=255) cATCTCCGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACACA > 2:778109‑M1/1‑100 (MQ=255) cATCTCCGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACACA > 1:447154‑M1/1‑100 (MQ=255) cATCTCCGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACACA > 2:2158524‑M1/1‑100 (MQ=255) cATCTCCGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACACA > 2:720737‑M1/1‑100 (MQ=255) cATCTCCGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACACA > 1:292746‑M1/1‑100 (MQ=255) cATCTCCGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACACA > 1:292713‑M1/1‑100 (MQ=255) cATCTCCGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACACA > 1:1495227‑M1/1‑100 (MQ=255) cATCTCCGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACACA > 1:514451‑M1/1‑100 (MQ=255) cATCTCCGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACACA > 2:486374‑M1/1‑100 (MQ=255) cATCTCCGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACACA > 1:2107102‑M1/1‑100 (MQ=255) cATCTCCGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACACA > 1:2005250‑M1/1‑100 (MQ=255) cATCTCCGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACACA > 1:1970670‑M1/1‑100 (MQ=255) cATCTCCGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACACA > 1:1917616‑M1/1‑100 (MQ=255) cATCTCCGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACACA > 1:736707‑M1/1‑100 (MQ=255) cATCTCCGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATACCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACACA > 2:1044607‑M1/1‑100 (MQ=255) aTCTCCGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACACAC > 1:907477‑M1/1‑100 (MQ=255) aTCTCCGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACACAC > 1:990065‑M1/1‑100 (MQ=255) aTCTCCGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACACAC < 2:374922‑M1/100‑1 (MQ=255) aTCTCCGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACACAC > 1:2209394‑M1/1‑100 (MQ=255) aTCTCCGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACACAC > 1:1917564‑M1/1‑100 (MQ=255) aTCTCCGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACACAC < 2:704781‑M1/100‑1 (MQ=255) tctcCGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACACACG > 2:1873849‑M1/1‑100 (MQ=255) tctcCGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACACACG > 1:901894‑M1/1‑100 (MQ=255) tctcCGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACACACG > 1:461232‑M1/1‑100 (MQ=255) tctcCGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACACACG < 1:668676‑M1/100‑1 (MQ=255) tctcCGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACACACG > 1:2108295‑M1/1‑100 (MQ=255) aCTGTTTCGGCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACACACGacggacgttagcaccc < 1:333293‑M1/100‑17 (MQ=255) gTTTCGGCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACACACGacggacgtagcacccgccg < 2:2320188‑M1/100‑20 (MQ=255) gTTTCGGCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACAC‑‑cggacgttagcacccgccgtg < 1:1330649‑M1/100‑22 (MQ=255) tCGGCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACACACGacggacgttagcacccgccgtg < 2:1224007‑M1/100‑23 (MQ=255) tCGGCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACACACGacggacgttagcacccgccgtg < 1:2155143‑M1/100‑23 (MQ=255) cGGCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACACACGacggacgttagcacccgccgtgt < 1:846304‑M1/100‑24 (MQ=255) cGGCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACACACGacggacgttagcacccgccgtgt < 1:1805591‑M1/100‑24 (MQ=255) ggCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATAGCGGAGAATGTTATCACGGGAGACACACGacggacgttagcacccgccgtgtg < 2:1244416‑M1/100‑25 (MQ=255) ggCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACACACGacggacgttagcacccgccgtgtg < 1:835927‑M1/100‑25 (MQ=255) ggCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACACACGacggacgttagcacccgccgtgtg < 1:832090‑M1/100‑25 (MQ=255) ggCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACACACGacggacgttagcacccgccgtgtg < 1:1491460‑M1/100‑25 (MQ=255) ggCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACACACGacggacgttagcacccgccgtgtg < 1:2288821‑M1/100‑25 (MQ=255) ggCAAGGGGGTCACCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACACACGacggacgttagcacccgccgtgtg < 1:919995‑M1/100‑25 (MQ=255) gCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACACACGacggacgttagcacccgccgtgtgt < 1:1253926‑M1/100‑26 (MQ=255) gCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACACACGacggacgttagcacccgccgtgtgt < 1:1455883‑M1/100‑26 (MQ=255) gCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACACACGacggacgttagcacccgccgtgtgt < 1:2247864‑M1/100‑26 (MQ=255) cAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACACACGacggacgttagcacccgccgtgtgtc < 1:40334‑M1/100‑27 (MQ=255) cAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACACACGacggacgttagcacccgccgtgtgtc < 2:854802‑M1/100‑27 (MQ=255) aGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACACACGacggacgttagcacccgccgtgtgtctc < 2:746650‑M1/100‑29 (MQ=255) gggggTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACACACGacggacgttagcacccgccgtgtgtctcc < 1:666234‑M1/100‑30 (MQ=255) gggggTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACACACGacggacgttagcacccgccgtgtgtctcc < 1:72567‑M1/100‑30 (MQ=255) gggTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACACACGacggacgttagcacccgccgtgtgtctcccg < 2:1018160‑M1/100‑32 (MQ=255) gTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACACACGacggacgttagcacccgccgtgtgtctcccgtg < 2:390058‑M1/100‑34 (MQ=255) tCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACACACGacggacgttagcacccgccgtgtgtctcccgtgataa < 2:839880‑M1/100‑38 (MQ=255) aTACCGGAGAATGTTATCACGGGAGACACACGacggacgttagcacccgccgtgtgtctcccgtgataacattctccggtattcgcagtttgcatcgggt < 1:433703‑M1/100‑69 (MQ=255) ctgcacgacggacgttagcacccgccgtgtgtctcccgtgataacattctccggtattcgcagtttgtatcgggttggtaagtcgggatgacccccttgc < 1:2235415‑M1/97‑94 (MQ=255) cacGacggacgttagcacccgccgtgtgtctcccgtgataacattctccggtattcgcagtttgcatcgggttggtaagtcgggatgacccccttgccga > 2:2298165‑M1/1‑4 (MQ=255) cacGacggacgttagcacccgccgtgtgtctcccgtgataacattctccggtattcgcagtttgcatcgggttggtaagtcgggatgacccccttgccga > 2:1937261‑M1/1‑4 (MQ=255) cacGacggacgttagcacccgccgtgtgtctcccgtgataacattctccggtattcgcagtttgcatcgggttggtaagtcgggatgacccccttgccga > 1:1850359‑M1/1‑4 (MQ=255) cacGacggacgttagcacccgccgtgtgtctcccgtgataacattctccggtattcgcagtttgcatcgggttggtaagtcgggatgacccccttgccga > 2:132704‑M1/1‑4 (MQ=255) cacGacggacgttagcacccgccgtgtgtctcccgtgataacattctccggtattcgcagtttgcatcgggttggtaagtcgggatgacccccttgccga > 1:898146‑M1/1‑4 (MQ=255) cacGacggacgttagcacccgccgtgtgtctcccgtgataacattctccggtattcgcagtttgcatcgggttggtaagtcgggatgacccccttgcc < 2:305485‑M1/98‑95 (MQ=255) | TCATCTCCGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACACACGGCGGGTGCTAACGTCCGTCGTGAAGAGGGAAACAACCCAGACCGCCAGCTAAGGTCCCAAAGTCATGGTTAAGTGGGAAACGATGTGGGAAGGCCC > NC_000913/226605‑226803 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |