New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	271440 =	NA (NA)	4 (0.050)	4/164	NT	NA	noncoding (900/1221 nt)	IS30	repeat region
	?	NC_000913	271463 =	NA (NA)					noncoding (923/1221 nt)	IS30	repeat region

ATAGCCACACTTGTAGACCGAAAATCACGTTATACGATCATCGTTAGACTCAGGGGCAAAGATTCTGTCTCAGTAAATCAGGCTCTTACCGACAAATTCCTGAGTTTACCGTCAGAACTCAGAAAATCACTGACATGGGACA  >  NC_000913/271341‑271482                                                                                                    |                                           ataGCCACACTTGTAGACCGAAAATCACGTTATACGATCATCGTTAGACTCAGGGGCAAAGATTCTGTCTCAGTAAATCAGGCTCTTACCGACAAATTcc                                            >  1:941047/1‑100 (MQ=33) ataGCCACACTTGTAGACCGAAAATCACGTTATACGATCATCGTTAGACTCAGGGGCAAAGATTCTGTCTCAGTAAATCAGGCTCTTACCGACAAATTcc                                            <  1:2284302/100‑1 (MQ=33)  taGCCACACTTGTAGACCGAAAATCACGTTATACGATCATCGTTAGACTCAGGGGCAAAGATTCTGTCTCAGTAAATCAGGCTCTTACCGACAAATTCCt                                           >  1:10577/1‑100 (MQ=33)   aGCCACACTTGTAGACCGAAAATCACGTTATACGATCATCGTTAGACTCAGGGGCAAAGATTGTGTCTAAGTAGATCAGGCTCTTGCCGACAAATTCCTg                                          >  2:123686/1‑100 (MQ=11)   aGCCACACTTGTAGACCGAAAATCACGTTATACGATCATCGTTAGACTCAGGGGCAAAGATTCTGTCTCAGTAAATCAGGCTCTTACCGACAAATTCCTg                                          <  2:1701098/100‑1 (MQ=33)     ccACACTTGTAGACCGAAAATCACGTTATACGATCATCGTTAGACTCAGGGGCAAAGATTCTGTCTCAGTAAATCAGGCTCTTACCGACAAATTCCTGAg                                        >  1:2273243/1‑100 (MQ=33)     ccACACTTGTAGACCGAAAATCACGTTATACGATCATCGTTAGACTCAGGGGCAAAGATTCTGTCTCAGTAAATCAGGCTCTTACCGACAAATTCCTGAg                                        <  2:2234810/100‑1 (MQ=33)      cacaCTTGTAGACCGAAAATCACGTTATACGATCATCGTTAGACTCAGGGGCAAAGATTCTGTCTCAGTAAATCAGGCTCTTACCGACAAATTCCTGAGt                                       <  1:655607/100‑1 (MQ=33)      cacaCTTGTAGACCGAAAATCACGTTATACGATCATCGTTAGACTCAGGGGCAAAGATTCTGTCTCAGTAAATCAGGCTCTTACCGACAAATTCCTGAGt                                       >  1:499139/1‑100 (MQ=33)      cacaCTTGTAGACCGAAAATCACGTTATACGATCATCGTTAGACTCAGGGGCAAAGATTCTGTCTCAGTAAATCAGGCTCTTACCGACAAATTCCTGAGt                                       >  1:2103722/1‑100 (MQ=32)      cacaCTTGTAGACCGAAAATCACGTTATACGATCATCGTTAGACTCAGGGGCAAAGATTCTGTCTCAGTAAATCAGGCTCTTACCGACAAATTCCTGAGt                                       >  2:349795/1‑100 (MQ=33)       acacTTGTAGACCGAAAATCACGTTATACGATCATCGTTAGACTCAGGGGCAAAGATTCTGTCTCAGTAAATCAGGCTCTTACCGACAAATTCCTGAGtt                                      >  1:1359523/1‑100 (MQ=33)       aaacTTGTAGACCGAAAATCACGTTATACGATCATCGTTAGAGTCAGGGGCAAAGTTTCTGTCTCAGTAAATCAGGCTCTTTCCGACAGATTCGTGAGtt                                      <  2:189000/98‑1 (MQ=11)        cacTTGTAGACCGAAAATCACGTTATACGATCATCGTTAGACTCAGGGGCAAAGATTCTGTCTCAGTAAATCAGGCTCTTACCGACAAATTCCTGAGttt                                     >  2:1570817/1‑100 (MQ=33)        cacTTGTAGACCGAAAATCACGTTATACGATCATCGTTAGACTCAGGGGCAAAGATTCTGTCTCAGTAAATCAGGCTCTTACCGACAAATTCCTGAGttt                                     >  2:151593/1‑100 (MQ=33)        cacTTGTAGACCGAAAATCACGTTATACGATCATCGTTAGACTCAGGGGCAAAGATTCTGTCTCAGTAAATCAGGCTCTTACCGACAAATTCCTGAGttt                                     >  1:1493518/1‑100 (MQ=33)        cacTTGTACAGCAAAAATCACGTTATACCATCATCGTTAGACTCAGGTTCAAAGATTCTGTCTCAGTAAATCATGCTCTTTCCGACAAATTTCTGAg                                        <  2:1403307/97‑1 (MQ=11)          cTTGTAGACCGAAAATCACGTTATACGATCATCGTTAGACTCAGGGGCAAAGATTCTGTCTCAGTAAATCAGGCTCTTACCGACAAATTCCTGAGTTTAc                                   <  2:2183872/100‑1 (MQ=33)               aGACCGAAAATCACGTTATACGATCATCGTTAGACTCAGGGGCAAAGATTCTGTCTCAGTAAATCAGGCTCTTACCGACAAATTCCTGAGTTTACCGTCa                              <  1:216690/100‑1 (MQ=33)                gACCGAAAATCACGTTATACGATCATCGTTAGACTCAGGGGCAAAGATTCTGTCTCAGTAAATCAGGCTCTTACCGACAAATTCCTGAGTTTACCGTCAg                             <  1:1629148/100‑1 (MQ=33)                 aCCGAAAATCACGTTATACGATCATCGTTAGACTCAGGGGCAAAGATTCTGTCTCAGTAAATCAGGCTCTTACCGACAAATTCCTGAGTTTACCGTCAGa                            <  1:1454460/100‑1 (MQ=33)                 aCCGAAAATCACGTTATACGATCATCGTTAGACTCAGGGGCAAAGATTCTGTCTCAGTAAATCAGGCCCTTACCGACAAATTCCTGAGTTTACCGTCAGa                            >  2:544911/1‑100 (MQ=17)                   cGAAAATCACGTTATACGATCATCGTTAGACTCAGGGGCAAAGATTCTGTCTCAGTAAATCAGGCTCTTACCGACAAATTCCTGAGTTTACCGTCAGAAc                          <  2:570962/100‑1 (MQ=32)                   cGAAAATCACGTTATACGATCATCGTTAGACTCAGGGGCAAAGATTCTGTCTCAGTAAATCAGGCTCTTACCGACAAATTCCTGAGTTTACCGTCAGAAc                          >  1:1080020/1‑100 (MQ=33)                    gAAAATCACGTTATACGATCATCGTTAGACTCAGGGGCAAAGATTCTGTCTCAGTAAATCAGGCTCTTACCGACAAATTCCTGAGTTTACCGTCAGAACt                         >  1:1064894/1‑100 (MQ=33)                     aaaaTCACGTTATACGATCATCGTTAGACTCAGGGGCAAAGATTCTGTCTCAGTAAATCAGGCTCTTACCGACAAATTCCTGAGTTTACCGTCAGAACTc                        <  2:1215908/100‑1 (MQ=33)                     aaaaTCACGTTATACGATCATCGTTAGACTCAGGGGCAAAGATTCTGTCTCAGTAAATCAGGCTCTTACCGACAAATTCCTGAGTTTACCGTCAGAACTc                        >  2:2077612/1‑100 (MQ=32)                          cACGTTATACGATCATCGTTAGACTCAGGGGCAAAGATTCTGTCTCAGTAAATCAGGCTCTTACCGACAAATTCCTGAGTTTACCGTCAGAACTCAGata                   <  1:1591357/100‑3 (MQ=18)                            cGTTATACGATCATCGTTAGACTCAGGGGCAAAGATTCTGTCTCAGTAAATCAGGCTCTTACCGACAAATTCCTGAGTTTACCGTCAGAACTCAGAAAAt                 <  1:699593/100‑1 (MQ=33)                              ttATACGATCATCGTTAGACTCAGGGGCAAAGATTCTGTCTCAGTAAATCAGGCTCTTACCGACAAATTCCTGAGTTTACCGTCAGAACTCAGAAAATCa               >  1:231682/1‑100 (MQ=33)                               tataCGATCATCGTTAGACTCAGGGGCAAAGATTCTGTCTCAGTAAATCAGGCTCTTACCGACAAATTCCTGAGTTTACCGTCAGAACTCAGAAAATCAc              <  1:2117652/100‑1 (MQ=33)                               tataCGATCATCGTTAGACTCAGGGGCAAAGATTCTGTCTCAGTAAATCAGGCTCTTACCGACAAATTCCTGAGTTTACCGTCAGAACTCAGAAAATCAc              <  1:1764233/100‑1 (MQ=33)                                 taCGATCATCGTTAGACTCAGGGGCAAAGATTCTGTCTCAGTAAATCAGGCTCTTACCGACAAATTCCTGAGTTTACCGTCAGAACTCAGAAAATCACTg            <  1:1841823/100‑1 (MQ=33)                                   cGATCATCGTTAGACTCAGGGGCAAAGATTCTGTCTCAGTAAATCAGGCTCTTACCGACAAATTCCTGAGTTTACCGTCAGAACTCAGAAAATCACTGa           >  1:759645/1‑99 (MQ=33)                                   cGATCATCGTTAGACTCAGGGGCAAAGATTCTGTCTCAGTAAATCAGGCTCTTACCGACAAATTCCTGAGTTTACCGTCAGAACTCAGAAAATCACTGAc          >  1:716306/1‑100 (MQ=33)                                   cGATCATCGTTAGACTCAGGGGCAAAGATTCTGTCTCAGTAAATCAGGCTCTTACCGACAAATTCCTGAGTTTACCGTCAGAACTCAGAAAATCACTGAc          >  1:121341/1‑100 (MQ=33)                                   cGATCATCGTTAGACTCAGGGGCAAAGATTCTGTCTCAGTAAATCAGGCTCTTACCGACAAATTCCTGAGTTTACCGTCAGAACTCAGAAAATCACTGAc          <  1:1925274/100‑1 (MQ=33)                                    gATCATCGTTAGACTCAGGGGCAAAGATTCTGTCTCAGTAAATCAGGCTCTTACCGACAAATTCCTGAGTTTACCGTCAGAACTCAGAAAATCACTGACa         >  1:2045757/1‑100 (MQ=33)                                     atcatcGTTAGACTCAGGGGCAAAGATTCTGTCTCAGTAAATCAGGCTCTTACCGACAAATTCCTGAGTTTACCGTCAGAACTCAGAAAATCACTGACAt        <  1:186937/100‑1 (MQ=33)                                        atcGTTAGACTCAGGGGCAAAGATTCTGTCTCAGTAAATCAGGCTCTTACCGACAAATTCCTGAGTTTACCGTCAGAACTCAGAAAATCACTGACATggg     <  1:239346/100‑1 (MQ=33)                                           gTTAGACTCAGGGGCAAAGATTCTGTCTCAGTAAATCAGGCTCTTACCGACAAATTCCTGAGTTTACCGTCAGAACTCAGAAAATCACTGACATGGGACa  >  1:2001525/1‑100 (MQ=11)                                           gTTAGACTCAGGGGCAAAGATTCTGTCTCAGTAAATCAGGCTCTTACCGACAAATTCCTGAGTTTACCGTCAGAACTCAGAAAATCACTGACATGGGACa  >  1:225841/1‑100 (MQ=11)                                                                                                    |                                           ATAGCCACACTTGTAGACCGAAAATCACGTTATACGATCATCGTTAGACTCAGGGGCAAAGATTCTGTCTCAGTAAATCAGGCTCTTACCGACAAATTCCTGAGTTTACCGTCAGAACTCAGAAAATCACTGACATGGGACA  >  NC_000913/271341‑271482

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.