New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 409056 =NA (NA)6 (0.070) 5/164 NT NA noncoding (5/37 nt) REP34 (repetitive extragenic palindromic) element; contains 1 REP sequences REP34 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913 409089 = NA (NA)intergenic (+139/+19) ykiA/rdgC pseudogene/nucleoid‑associated ssDNA and dsDNA binding protein; competitive inhibitor of RecA function

TCCATGGAGCAAGTTACAGCGTAAAACGCATAATATTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAGGTTTTGAATTA  >  NC_000913/408958‑409154
                                                                                                  |                                                                                                  
tCCATGGAGCAAGTTACAGCGTAAAACGCATAATATTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGc                                                                                                   >  1:234537/1‑100 (MQ=255)
 ttcatcctgatgactggtgaactggcagcgttaattcaaaacctgattgaaggattaggtggcgaagcacaacgttaattgctgattttcctttaatGc                                                                                                   >  2:1984153‑M1/98‑99 (MQ=255)
 ccATGGAGCAAGTTACAGCGTAAAACGCATAATATTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGcc                                                                                                  >  2:74796/1‑100 (MQ=255)
 ccATGGAGCAAGTTACAGCGTAAAACGCATAATATTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGcc                                                                                                  >  1:1347748/1‑100 (MQ=255)
  tcatcctgatgactggtgaactggcagcgttaattcaaaacctgattgaaggattaggtggcgaagcacaacgttaattgctgattttcctttaatGCCg                                                                                                 >  1:2206555‑M1/97‑100 (MQ=255)
  tcatcctgatgactggtgaactggcagcgttaattcaaaacctgattgaaggattaggtggcgaagcacaacgttaattgctgattttcctttaatGCCg                                                                                                 >  2:637166‑M1/97‑100 (MQ=255)
  tcatcctgatgactggtgaactggcagcgttaattcaaaacctgattgaaggattaggtggcgaagcacaacgttaattgctgattttcctttaatGCCg                                                                                                 <  2:1473435‑M1/4‑1 (MQ=255)
  cATGGAGCAAGTTACAGCGTAAAACGCATAATATTGCTGCGCTAAAAATTATTGCTCGCGGTGGCGAAGAATTATATGCCTGGTGGGGCTTCGTACGCCg                                                                                                 >  1:2205877/1‑100 (MQ=255)
  cATGGAGCAAGTTACAGCGTAAAACGCATAATATTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCg                                                                                                 <  2:550252/100‑1 (MQ=255)
   catcctgatgactggtgaactggcagcgttaattcaaaacctgattgaaggattaggtggcgaagcacaacgttaattgctgattttcctttaatGCCgg                                                                                                >  1:894176‑M1/96‑100 (MQ=255)
   catcctgatgactggtgaactggcagcgttaattcaaaacctgattgaaggattaggtggcgaagcacaacgttaattgctgattttcctttaatGCCgg                                                                                                >  1:2281733‑M1/96‑100 (MQ=255)
   catcctgatgactggtgaactggcagcgttaattcaaaacctgattgaaggattaggtggcgaagcacaacgttaattgctgattttcctttaatGCCgg                                                                                                <  2:541911‑M1/5‑1 (MQ=255)
   catcctgatgactggtgaactggcagcgttaattcaaaacctgattgaaggattaggtggcgaagcacaacgttaattactgattatcctttactGCCg                                                                                                 <  2:2205858‑M1/4‑1 (MQ=255)
   catcctgatgactggtgaactggcagcgttaattcaaaacccgattgaaggattaggtggcgaagcacaacgttaattgctgattttcctttaatGCCgg                                                                                                >  2:632424‑M1/96‑100 (MQ=255)
    tGGAGCAAGTTACAGCGTAAAACGCATAATATTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGa                                                                                               <  1:1047766/100‑1 (MQ=255)
    atcctgatgactggtgaactggcagcgttaattcaaaacctgattgaaggattaggtggcgaagcacaacgttaattgctgattttcctttaatGCCGGa                                                                                               >  2:1280345‑M1/95‑100 (MQ=255)
    atcctgatgactggtgaactggcagcgttaattcaaaacctgattgaaggattaggtggcgaagcacaacgttaattgctgattttcctttaatGCCGGa                                                                                               >  1:258943‑M1/95‑100 (MQ=255)
    atcctgatgactggtgaactggcagcgttaattcaaaacctgattgaaggattaggtggcgaagcacaacgttaattgctgattttcctttaatGCCGGa                                                                                               <  1:1258343‑M1/6‑1 (MQ=255)
    atcctgatgactggtgaactggcagcgttaattcaaaaccggattgaaggattaggtggcgaagcacaacgttaattgctgattttcctttaatGCCGGa                                                                                               <  1:2214628‑M1/6‑1 (MQ=255)
     tcctgatgactggtgaactggcagcgttaattcaaaacctgattgaaggattaggtggcgaagcacaacgttaattgctgattttcctttaatGCCGGAt                                                                                              <  1:747077‑M1/7‑1 (MQ=255)
     ggAGCAAGTTACAGCGTAAAACGCATAATATTGCTGCGTTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGAt                                                                                              <  2:1961086/100‑1 (MQ=255)
     ggAGCAAGTTACAGCGTAAAACGCATAATATTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGAt                                                                                              >  2:1342375/1‑100 (MQ=255)
     ggAGCAAGTTACAGCGTAAAACGCATAATATTGCTGCGCTAAAAATTATAGCTCGCAGAAGCGAATAATAATATGCCTGGTGTGGCTTCGTACGCCg                                                                                                 >  2:576529/1‑97 (MQ=255)
      gAGCACGTTACAGCGAAAAACGCGTAATATTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAGTTATATGCCTGGTGTGGCTTCGTACGCGGGAt                                                                                              >  2:2152981/1‑99 (MQ=255)
       aGCAAGTTACAGCGTAAAACGCATAATATTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATaa                                                                                            >  2:2243324/1‑100 (MQ=255)
        gCAAGTTACAGCGTAAAACGCATAATATTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAg                                                                                           <  1:191477/100‑1 (MQ=255)
          aaGTTACAGCGTAAAACGCATAATATTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGAc                                                                                         <  1:721202/100‑1 (MQ=255)
           aGTTACAGCGTAAAACGCATAATATTGCTGCGCTAAAAATTATTGCTCGCCGTAGAGAATAATTATATGCCTGGTGTTGCTTCGTACGCCGGATACGAc                                                                                         >  2:2024396/1‑99 (MQ=255)
               aCAGCGTAAAACGCATAATATTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGc                                                                                    >  1:1473443/1‑100 (MQ=255)
               aCAGCGTAAAACGCATAATATTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGACTGGTGTGGCTTCGTACGCCGGATAAGACGCGGc                                                                                    <  2:2166987/100‑1 (MQ=255)
                cAGCGTAAAACGCATAATATTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCa                                                                                   >  1:107997/1‑100 (MQ=255)
                cAGCGTAAAACGCATAATATTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCa                                                                                   >  1:1128216/1‑100 (MQ=255)
                 aGCGTAAAACGCATAATATTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAg                                                                                  <  2:481317/100‑1 (MQ=255)
                  gCGTAAAACGCATAATATTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAgg                                                                                 >  2:472670/1‑100 (MQ=255)
                       aaaCGCATAATATTGCTGCGCTAAATATTATTGCTCTCCGTAGCGAATAATTATATTCTTGGTTTGGCTTCGTACGCCGAATGAGACGCGGCAGGCGTCg                                                                            <  2:1080095/100‑1 (MQ=255)
                       aaaCGCATAATATTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCg                                                                            >  2:2016642/1‑100 (MQ=255)
                       aaaCGCATAATATTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCg                                                                            <  1:1375125/100‑1 (MQ=255)
                       aaaCGCATAATATTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCg                                                                            <  1:739666/100‑1 (MQ=255)
                           gCATAATATTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATc                                                                        <  1:225046/100‑1 (MQ=255)
                           gCATAATATTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATc                                                                        >  2:1856099/1‑100 (MQ=255)
                           gCATAATATTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATc                                                                        >  1:2163005/1‑100 (MQ=255)
                           gCATAATATTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATc                                                                        >  1:2024502/1‑100 (MQ=255)
                              taataTTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCgg                                                                     >  1:1726677/1‑100 (MQ=255)
                               ttaattcaaaacctaattgaaggattaggtggcgaagcacaacgttaattgctgattttcctttaatGCCGGATAAGACGCGGCAGGCGTCGCATCCGGc                                                                    >  1:217435‑M1/68‑100 (MQ=255)
                                taattcaatacctgattgaaggtttaggtggcgaagcacaacgttaattgctgattttcctttaatGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCa                                                                   >  2:1171513‑M1/67‑100 (MQ=255)
                                 tatTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGTAt                                                                  <  1:868134/100‑1 (MQ=255)
                                 tatTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCAt                                                                  >  2:2175312/1‑100 (MQ=255)
                                 aattcaaaacctgattgaaggattaggtggcgaagcacaacgttaattgctgattttcctttaatGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCAt                                                                  >  2:1789522‑M1/66‑100 (MQ=255)
                                 aagtcaaaacctgattgaaggattaggtggcgaagcacaacgttaattgctgattttcctttaatGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCAt                                                                  >  1:812406‑M1/66‑100 (MQ=255)
                                  atTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCAtt                                                                 <  2:1269590/100‑1 (MQ=255)
                                    tgctgcGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTaa                                                               >  2:1013760/1‑100 (MQ=255)
                                      ctgcGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAg                                                             <  1:1837854/100‑1 (MQ=255)
                                      ctgcGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAg                                                             <  2:478539/100‑1 (MQ=255)
                                      ctgcGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAg                                                             <  1:109073/100‑1 (MQ=255)
                                      aaaacctgattgaaggattaggtggcgaagcacaacgttaattgctgattttcctttaatGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAg                                                             >  2:353394‑M1/61‑100 (MQ=255)
                                        gcgcTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGa                                                           <  1:264728/100‑1 (MQ=255)
                                          gcTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGaaa                                                         >  1:1472557/1‑100 (MQ=255)
                                           cTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGaaaa                                                        >  2:1851448/1‑100 (MQ=255)
                                            tAAAAATTATTGCTCGCCGTAGCGAATAATTATATGACTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAAt                                                       >  1:1655550/1‑100 (MQ=255)
                                             aaaaaTTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATc                                                      >  2:1200997/1‑100 (MQ=255)
                                             aaaaaTTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATc                                                      >  1:2146089/1‑100 (MQ=255)
                                               aaaTTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAg                                                    <  2:504539/100‑1 (MQ=255)
                                                aaTTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGc                                                   >  1:541914/1‑100 (MQ=255)
                                                 attattGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGc                                                   <  2:1433972/99‑1 (MQ=255)
                                                    attGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAAtt                                               >  2:58075/1‑100 (MQ=255)
                                                       gCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAAc                                            <  2:2331214/100‑1 (MQ=255)
                                                        cTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGTAAAATCAGCAATTAACg                                           >  2:60478/1‑100 (MQ=255)
                                                              gcgaagcacaacgttaattgctgattttcctttaatGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGc                                     >  1:1542962‑M1/37‑100 (MQ=255)
                                                                 gCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTc                                  >  2:1236809/1‑100 (MQ=255)
                                                                  cGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCg                                 >  1:181832/1‑100 (MQ=255)
                                                                  cGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCg                                 >  1:1636233/1‑100 (MQ=255)
                                                                   gAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGc                                >  1:1445238/1‑100 (MQ=255)
                                                                   gAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGc                                >  2:1889013/1‑100 (MQ=255)
                                                                    aataatTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGcc                               <  1:770861/100‑1 (MQ=255)
                                                                        atTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCt                           >  1:548541/1‑100 (MQ=255)
                                                                        atTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCt                           <  1:335187/100‑1 (MQ=255)
                                                                        atTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCt                           >  1:484951/1‑100 (MQ=255)
                                                                            tatGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATc                       <  2:1318429/100‑1 (MQ=255)
                                                                             atGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATcc                      <  2:445870/100‑1 (MQ=255)
                                                                               gCCTGGTGTGGCTTCGTACGCCGGATAAGATGCCGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCtt                    >  2:1543432/1‑100 (MQ=255)
                                                                                ccTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTc                   <  2:2162986/100‑1 (MQ=255)
                                                                                 cTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTc                   <  2:1884378/99‑1 (MQ=255)
                                                                                 cTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCa                  <  2:234536/100‑1 (MQ=255)
                                                                                  tGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTcca                 >  1:1610452/1‑98 (MQ=255)
                                                                                        ggCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAGGt           <  2:1395956/100‑1 (MQ=255)
                                                                                          cTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGTTTCGCCACCTAATCCTTCAATCAGGttt         >  1:252858/1‑100 (MQ=255)
                                                                                          cTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAGGttt         >  1:1406347/1‑100 (MQ=255)
                                                                                           ttCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAGGtttt        <  1:1819035/100‑1 (MQ=255)
                                                                                            tCGTACGCCGGATGAGACGCGGCAGGCGTCGAATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAGGTTTTg       >  1:1581125/1‑100 (MQ=255)
                                                                                            tCGTACGCCGGATAAGACGCGGCAGGTGGCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAGGTTTTg       <  2:1338007/100‑1 (MQ=255)
                                                                                            tCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAGGTTTTg       <  1:2191419/100‑1 (MQ=255)
                                                                                            tCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAGGTTTTg       >  1:2258614/1‑100 (MQ=255)
                                                                                            tCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAGGTTTTg       <  2:1868657/100‑1 (MQ=255)
                                                                                             cGTACGACGGATAAGACGCCGCAGGCGTCCCATCAGGCATTAAAGGAAAACCAGCAATTCACGTAGTACTTCGCCACCTAATACTTCATTCAGGttttaa      >  2:98478/1‑98 (MQ=255)
                                                                                              gTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAGGTTTTGaa     <  1:29395/100‑1 (MQ=255)
                                                                                              gTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAGGTTTTGaa     <  1:831163/100‑1 (MQ=255)
                                                                                                aCGCCGGATAAGACACGGCAGCCGTCGCATCCTGCATTAAAAGAAAATCAGCAATTAAACTTGTGCTTCGCCACCTAATCCTTCCCTCAGGTTTTGa      <  2:560198/97‑1 (MQ=255)
                                                                                                 cGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAGGTTTTGAATTa  >  1:2264169/1‑100 (MQ=255)
                                                                                                 cGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAGGTTTTGAATTa  >  2:2194651/1‑100 (MQ=255)
                                                                                                 cGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAGGTTTTGAATTa  <  2:2207722/100‑1 (MQ=255)
                                                                                                  |                                                                                                  
TCCATGGAGCAAGTTACAGCGTAAAACGCATAATATTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAGGTTTTGAATTA  >  NC_000913/408958‑409154

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.