| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 734797 = | 48 (0.550) | 9 (0.110) | 3/168 | NT | 28.4% | pseudogene (665/1521 nt) | rhsO | pseudogene, Rhs family |
| ? | NC_000913 | 3622561 = | 0 (0.000) | coding (3370/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor | |||||
GCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTG > NC_000913/734698‑734896 | cgccagcggcaggccgcgatggtcgcagtggtacaggtggatttttcgcgccggcgtgtacaccgggtccatctggttttgcatctgctccacggtcagg > 1:2255233‑M1/100‑100 (MQ=255) gccagcggcaggccgcgatggtcgcagtggtacaggtggatttttctctctttcttgtacaccgggtccatctggttttgcatctgctccacggtcaggc < 2:1844860‑M1/2‑1 (MQ=255) gccagcggcaggccgcgatggtcgcagtggtacaggtggatttttcgcgccggcgtgtacaccgggtccatctggttttgcatctgctccacggtcaggc > 1:697817‑M1/99‑100 (MQ=255) gccagcggcaggccgcgatggtcgcagtggtacaggtggatttttcgcgccggcgtgtacaccgggtccatctggttttgcatctgctccacggtcaggc < 1:304610‑M1/2‑1 (MQ=255) gccagcggcaggccgcgatggtcgcagtggtacaggtggatttttcgcgccggcgtgtacaccgggtccatctggttttgcatctgctccacggtcaggc < 2:1200850‑M1/2‑1 (MQ=255) gccagcggcaggccgcgatggtcgcagtggtacaggtggatttttcgcgccggcgtgtacaccgggtccatctggttttgcatctgctccacggtcaggc < 1:2242054‑M1/2‑1 (MQ=255) ccagcggcaggccgcgatggtcgcagtggtacaggtggatttttcgcgccggcgtgtacaccgggtccatctggttttgcatctgctccacggtcaggcc < 1:665446‑M1/3‑1 (MQ=255) ccagcggcaggccgcgatggtcgcagtggtacaggtggatttttcgcgccggcgtgtacaccgggtccatctggttttgcatctgctccacggtcaggcc < 1:1352384‑M1/3‑1 (MQ=255) cagcggcaggccgcgatggtcgcagtggtacaggtggatttttcgcgccggcgtgtacaccgggtccatctggttttgcatctgctccacggtcaggccg < 2:1063028‑M1/4‑1 (MQ=255) agcggcaggccgcgatggtcgcagtggtacaggtggatttttcgcgccggcgtgtacaccgggtccatctggttttgcatctgctccacggtcaggccgc < 1:783407‑M1/5‑1 (MQ=255) agcggcaggccgcgatggtcgcagtggtacaggtggatttttcgcgccggcgtgtacaccgggtccatctggttttgcatctgctccacggtcaggccg > 2:608665‑M1/96‑99 (MQ=255) tcgcagtggtacaggtggatttttcgcgccggcgtgtacaccgggtccatctggtttttcatctgctccacggtcagGCCGCCGCTGGCTGGCATCGTGc > 2:2287527‑M1/78‑100 (MQ=255) tcgcagtggtacaggtggatttttcgcgccggcgtgtacaccgggtccatctggttttgcatctgctccaccgtcagGCCGC‑‑‑TGGCTGGCATCGTGCGGc > 1:574896‑M1/78‑100 (MQ=255) agtggtaccggtggatttttcgcgccggcgtgtacaccgggtccatctggtttttcatctgctccacggtcagGCCGCCGCTGGCTGGCATCGTGCGGcc > 2:2213757‑M1/74‑100 (MQ=255) agtggtacaggtggatttttcgcgccggcgtgtacaccgggtccatctggtttttcatctgctccacggtcagGCCGCCGCTGGCTGGCATCGTGCGGcc > 2:2213734‑M1/74‑100 (MQ=255) agtggtacaggtggatttttcgcgccggcgtgtacaccgggtccatctggtttttcatctgccccacggtcagGCCGCCGCTGGCTGGCATCGTGCGGcc > 1:2119789‑M1/74‑100 (MQ=255) agtggtacaggtggatttttcgcgccggcgtgtacaccgggtccatctggttttgcatctgctccacggtcagGCCGCCGCTGGCTGGCATCGTGCGGcc > 1:635367‑M1/74‑100 (MQ=255) gtggtacaggtggatttttcgcgccggcgtgtacaccgggtccatctggttttgcatctgctccacggtcagGCCGCCGCTGGCTGGCATCGTGCGGCCt > 2:911671‑M1/73‑100 (MQ=255) gtggtacaggtggatttttcgcgccggcgtgtacaccgggtccatctggttttgcatctgctccacggtcagGCCGC‑‑‑TGGCTGGCATCGTGCGGCCTGAc > 1:1248988‑M1/73‑100 (MQ=255) acaggtggatttttcgcgccggcgtgtacaccggggccatctggttttgcatctgctccaccgtcagGCCGCCGCTGGCTGGCATCGTGCGGCCTGACgg > 2:107457‑M1/68‑100 (MQ=255) cTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGc > 1:1687775/1‑100 (MQ=32) ggTGCAGATGCTCGACCGGCTGGAAAGTGAAATGCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGATGGCATCGTGCGGCCTGACGGTGGAGCAG < 2:1411640‑M2/100‑1 (MQ=255) gTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGA > 2:2170228‑M2/1‑100 (MQ=255) gTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGA > 1:32038‑M2/1‑100 (MQ=255) gTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGA < 1:1325145‑M2/100‑1 (MQ=255) tGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCCTCGTGCGGCCTGACGGTGGAGCAGA < 2:1696970‑M2/99‑1 (MQ=255) cAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGC > 1:1245245‑M2/1‑100 (MQ=255) aGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCa > 2:2003307/1‑100 (MQ=33) aGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCa < 1:97676/100‑1 (MQ=33) tGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCTGGTGAGTGAGGAAAGCCGCCGCTGGCTCGCATCGTGCGGCCTGACGGTGGAGCAGATGC > 2:2067089‑M2/1‑96 (MQ=255) tGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCaaaa < 1:667389/100‑1 (MQ=33) gCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAAc > 2:1279608/1‑100 (MQ=33) cTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAAcc > 2:961242/1‑100 (MQ=33) cTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAAcc > 2:1467327/1‑100 (MQ=33) cGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAg < 2:2213259/100‑1 (MQ=32) gACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGa < 2:1194068/100‑1 (MQ=33) gACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGa > 1:1940594/1‑100 (MQ=33) aCCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGAt < 1:761854/100‑1 (MQ=32) ccGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATg > 2:973787/1‑100 (MQ=32) cGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATgg < 2:1701436/100‑1 (MQ=32) ggCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGa < 1:1082802/100‑1 (MQ=33) ggCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGa > 1:1863435/1‑100 (MQ=33) cTGGAAAGTGAAATCCTGGCTGACCGTATGAGTGAGGAAAGCCGCCGCTGGCTGTCATCCTGCGGCCTGACGGGGGGGCAGAGGCATAAACAGATGGAcc > 2:263119/1‑100 (MQ=11) cTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGAcc < 1:415740/100‑1 (MQ=33) ggAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCg > 1:1581302/1‑100 (MQ=33) ggAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCg > 1:2231866/1‑100 (MQ=33) aaGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGgtg < 1:980942/100‑1 (MQ=33) aaGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGgtg < 1:724951/100‑1 (MQ=32) aaGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGgtg > 1:1141494/1‑100 (MQ=33) aaGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGgtg > 1:1139010/1‑100 (MQ=32) aGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGgtgt < 2:1103776/100‑1 (MQ=33) gTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTa > 2:1830727/1‑100 (MQ=33) gTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGCGTa > 2:627956/1‑100 (MQ=18) tGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTac > 1:306676/1‑100 (MQ=33) gAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTaca < 1:571180/100‑1 (MQ=33) cTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCgg > 1:295478/1‑100 (MQ=33) cTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCgg > 1:1977785/1‑100 (MQ=33) cTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCgg > 1:374791/1‑100 (MQ=33) ggCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGgcg > 1:15496/1‑100 (MQ=33) cTGGCCGGGTGAGTGAGGAAAGCCGTCGCTGGCTGGCATCGTGCGGCCTGACGGTGCAGCAGATGCAAAACCAGATGGGCCCGGTGTACACGCCgg < 2:1902257/96‑1 (MQ=11) cTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGcgcg < 2:254605/100‑1 (MQ=33) tGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGa < 2:1207019/100‑1 (MQ=33) gACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGaa > 2:482244/1‑100 (MQ=33) gACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGaa > 1:2091724/1‑100 (MQ=33) aCCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGaaa > 1:257864/1‑100 (MQ=32) aCCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGaaa < 1:31882/100‑1 (MQ=33) ccGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGaaaa < 1:1323251/100‑1 (MQ=33) ggTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATc < 2:1348540/100‑1 (MQ=32) agtgagGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCAcc > 1:1745849/1‑100 (MQ=33) gtgagGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCt > 1:1987549/1‑100 (MQ=33) gtgagGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCt > 1:1517436/1‑100 (MQ=33) gtgagGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCt > 1:2280725/1‑100 (MQ=33) gagGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGt > 1:686628/1‑100 (MQ=32) gagGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTCTCCACGCCGGCGCGAAAAATCCACCt > 1:686721/1‑98 (MQ=16) agGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTa > 1:1522358/1‑100 (MQ=33) gAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTAcc < 1:973792/100‑1 (MQ=33) gAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTAc > 2:2034244/1‑99 (MQ=32) GCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTg < 2:1133216‑M1/100‑1 (MQ=255) | GCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTG > NC_000913/734698‑734896 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |