New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 2729453 =NA (NA)8 (0.100) 6/158 NT 56.3% intergenic (‑9/+163) gltW/rrsG tRNA‑Glu/16S ribosomal RNA of rrnG operon
?NC_000913 2729475 = 7 (0.080)intergenic (‑31/+141) gltW/rrsG tRNA‑Glu/16S ribosomal RNA of rrnG operon

AAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTT  >  NC_000913/2729358‑2729478
                                                                                               |                         
aacccAGCAAGTGGCGTCCGATAGGGGATTCGAAGCCGTGTTAGCGCCGGGAAAGGGCGGTGTCCTGGGCCTATAGACGAAGGGGACACGAAAATTGCtt                       <  2:2355349/97‑1 (MQ=1)
                     tAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCAACGCGTGataagc  <  1:1176527/100‑4 (MQ=1)
                                                                                               |                         
AAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTT  >  NC_000913/2729358‑2729478

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.