New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 377335 =NA (NA)9 (0.110) 4/164 NT NA noncoding (1/187 nt) REP32 (repetitive extragenic palindromic) element; contains 4 REP sequences REP32 (repetitive extragenic palindromic) element; contains 4 REP sequences
?NC_000913 377368 = NA (NA)noncoding (34/187 nt) REP32 (repetitive extragenic palindromic) element; contains 4 REP sequences REP32 (repetitive extragenic palindromic) element; contains 4 REP sequences

Only 100 of 138 total aligned reads displayed.

CCCGTATGCCGACTTCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCCATGCCTGATGCGACGCTTTGCGCGTCTTATCAGGC  >  NC_000913/377269‑377467
                                                                                                   |                                                                                                   
cccGTATGTCGACTTCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGcc                                                                                                     >  1:422530/1‑100 (MQ=255)
   gTATGCCGACTTCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTAc                                                                                                  >  2:126698/1‑100 (MQ=255)
     atctcGACTTCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACgg                                                                                                <  2:438720/96‑1 (MQ=255)
       gCCGACTTCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGtt                                                                                              >  2:1957342/1‑100 (MQ=255)
       gCCGACTTCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGtt                                                                                              >  2:1489734/1‑100 (MQ=255)
        ccGACTTCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGttt                                                                                             >  1:1998213/1‑100 (MQ=255)
        ccGACTTCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGttt                                                                                             >  2:755993/1‑100 (MQ=255)
        ccGACTTCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGttt                                                                                             >  2:690900/1‑100 (MQ=255)
         cGACTTCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTa                                                                                            >  2:127385/1‑100 (MQ=255)
         cGACTTCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTa                                                                                            <  1:1932165/100‑1 (MQ=255)
          gACTTCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTAt                                                                                           <  1:956490/100‑1 (MQ=255)
           tgccggatgcggcgtgaacgccttatccggtctacacttcgcccataaaccgtagGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATg                                                                                          >  2:165843‑M1/56‑100 (MQ=255)
           aCTTCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATg                                                                                          <  2:1221819/100‑1 (MQ=255)
             ttCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATggg                                                                                        <  1:1648780/100‑1 (MQ=255)
              tCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGGGCAGATGCCTGGTGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATggg                                                                                        >  2:1998563/1‑99 (MQ=255)
               cAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCg                                                                                      >  2:287062/1‑100 (MQ=255)
               cAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCg                                                                                      <  1:646598/100‑1 (MQ=255)
                aaaGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGa                                                                                     >  1:1899794/1‑100 (MQ=255)
                 aaGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGaa                                                                                    >  1:1725526/1‑100 (MQ=255)
                 aaGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGaa                                                                                    >  2:1394815/1‑100 (MQ=255)
                  aGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAg                                                                                   >  1:1071828/1‑100 (MQ=255)
                   gTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAgt                                                                                  <  1:1689756/100‑1 (MQ=255)
                       cTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTa                                                                               <  1:1524998/99‑1 (MQ=255)
                       cTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAg                                                                              >  1:2208267/1‑100 (MQ=255)
                        tgatgaTTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGa                                                                             >  2:1931182/1‑100 (MQ=255)
                         gatgatTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGAc                                                                            >  2:502666/1‑100 (MQ=255)
                                 gATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAg                                                                    >  1:1840793/1‑100 (MQ=255)
                                 gATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAg                                                                    >  1:2180350/1‑100 (MQ=255)
                                    gtgGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAgg                                                                   <  2:1430627/98‑1 (MQ=255)
                                    gtgGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCg                                                                 >  1:1064212/1‑100 (MQ=255)
                                    gtgGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCg                                                                 >  1:2164117/1‑100 (MQ=255)
                                    gtgGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCg                                                                 <  2:628085/100‑1 (MQ=255)
                                    gtgGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCg                                                                 >  2:532630/1‑100 (MQ=255)
                                    gtgGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCGATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAgg                                                                   <  2:166873/98‑1 (MQ=255)
                                      ggTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGtt                                                               >  1:236182/1‑100 (MQ=255)
                                      ggTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGtt                                                               >  2:12903/1‑100 (MQ=255)
                                      ggTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGtt                                                               >  2:51224/1‑100 (MQ=255)
                                      ggTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGtt                                                               >  2:252414/1‑100 (MQ=255)
                                      ggTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGtt                                                               >  2:252680/1‑100 (MQ=255)
                                        tAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCa                                                             <  1:406001/100‑1 (MQ=255)
                                        tAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCa                                                             >  1:1520708/1‑100 (MQ=255)
                                         aaaCATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCAc                                                            >  2:1925324/1‑100 (MQ=255)
                                             aTAGATAAGTCGTGCGCAGATGCCTGATGCGCCGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCAcgccg                                                        <  2:1589788/100‑1 (MQ=255)
                                              tAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCAcgccgc                                                       >  1:760228/1‑100 (MQ=255)
                                                gATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCAt                                                     >  2:1493315/1‑100 (MQ=255)
                                                gATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCAt                                                     >  1:413855/1‑100 (MQ=255)
                                                gATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCAt                                                     >  2:1744979/1‑100 (MQ=255)
                                                   aaGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCg                                                  <  1:1299129/100‑1 (MQ=255)
                                                     gTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGc                                                <  1:1577204/100‑1 (MQ=255)
                                                      cataaaccgtaggcctgataagacgcgcatagcgtcgcatcaggcCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCa                                               >  2:165843‑M2/46‑100 (MQ=255)
                                                       cGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATGCGGCGTGAACGCCTTATCCggtct                                              <  1:1758278/100‑4 (MQ=18)
                                                       cGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAg                                              <  1:633339/100‑1 (MQ=255)
                                                       cGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAg                                              <  1:940592/100‑1 (MQ=255)
                                                         tGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTc                                            >  2:151331/1‑100 (MQ=255)
                                                         tGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTc                                            >  1:963651/1‑100 (MQ=255)
                                                          gcgcAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCg                                           <  2:910927/100‑1 (MQ=255)
                                                           cgcAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGt                                          >  2:1811245/1‑100 (MQ=255)
                                                             cAGATGTCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTgc                                        >  1:581123/1‑100 (MQ=255)
                                                             cAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTgc                                        <  1:966595/100‑1 (MQ=255)
                                                             cAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTgc                                        >  1:1053901/1‑100 (MQ=255)
                                                                aTGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGcc                                     <  2:784239/100‑1 (MQ=255)
                                                                 tGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCCa                                    <  2:260638/100‑1 (MQ=255)
                                                                 tGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCCa                                    >  1:926683/1‑100 (MQ=255)
                                                                 tGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCCa                                    >  1:1354951/1‑100 (MQ=255)
                                                                  gcctgataagacgcgcatagcgtcgcatcaggcCTACGGTTTATGGGCGAAGTGTAGACCGGATCAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCCAt                                   >  1:2137885‑M2/34‑100 (MQ=255)
                                                                  gcctgataagacgcgcatagcgtcgcatcaggcCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGTGCCAt                                   >  1:1409097‑M2/34‑100 (MQ=255)
                                                                  gcctgataagacgcgcatagcgtcgcatcaggcCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCCAt                                   >  1:170410‑M2/34‑100 (MQ=255)
                                                                  gcctgataagacgcgcatagcgtcgcatcagacCTACGGTTTGTGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCCAt                                   >  1:1589691‑M2/34‑100 (MQ=255)
                                                                   cctgataagacgcgcatagtgtcgcatcaggcCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCCa                                    >  2:1987767‑M2/33‑98 (MQ=255)
                                                                   cctgataagacgcgcaaagcgtcgcatcaggcCTACGGCTTACGGGCGAAGTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCagtcgtgctattat                                  >  1:854940‑M2/33‑94 (MQ=255)
                                                                   CCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTGGTGCGCCATg                                  <  2:773079‑M1/100‑1 (MQ=255)
                                                                    CTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCcatcc                                 >  1:1589229‑M1/1‑98 (MQ=255)
                                                                    CTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCCATGc                                 <  1:550249‑M1/100‑1 (MQ=255)
                                                                     TGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCCATGcc                                >  1:252681‑M1/1‑100 (MQ=255)
                                                                      GATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCCATGCCt                               >  1:1945462‑M1/1‑100 (MQ=255)
                                                                        TGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCCATGCCTGa                             >  2:401118‑M1/1‑100 (MQ=255)
                                                                         gCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCCATGCCTGAt                            <  1:1744991/100‑1 (MQ=255)
                                                                          cGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCCATGCCTGATg                           >  1:871633/1‑100 (MQ=255)
                                                                           gACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCCATGCCTGATGc                          <  2:340196/100‑1 (MQ=255)
                                                                           gACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCCATGCCTGATGc                          <  1:1257854/100‑1 (MQ=255)
                                                                           gACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCCATGCCTGATGc                          <  2:2248913/100‑1 (MQ=255)
                                                                            aCGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCCATGCCTGATGc                          <  2:1522286/99‑1 (MQ=255)
                                                                            aCGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCCATGCCTGATGCg                         <  2:86381/100‑1 (MQ=255)
                                                                             cGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCCATGCCTGCTGCGa                        >  1:1610420/1‑100 (MQ=255)
                                                                               cgcatagcgtcgcatcaggcCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCCATGCCTGATGCGACg                      >  1:328936‑M2/21‑100 (MQ=255)
                                                                               cTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCCATGCCTGATGCGACg                      <  1:1265441/100‑1 (MQ=255)
                                                                                  tGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCCATGCCTGATGCGACGCtt                   <  1:918341/100‑1 (MQ=255)
                                                                                    cgcgTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCCATGCCTGATGCGACGCTTTg                 >  1:1255169/1‑100 (MQ=255)
                                                                                         cTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCCATGCCTGATGCGACGCTTTGCGCGt            >  1:1796704/1‑100 (MQ=255)
                                                                                         cTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCCATGCCTGATGCGACGCTTTGCGCGt            >  1:2116259/1‑100 (MQ=255)
                                                                                          ttATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCCATGCCTGATGCGACGCTTTGCGCGTc           >  1:2299954/1‑100 (MQ=255)
                                                                                            atcaggcCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCCATGCCTGATGCGACGCTTTGCGCGTCtt         >  2:1634304‑M2/8‑100 (MQ=255)
                                                                                               aggcCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCCATGCCTGATGCGACGCTTTGCGCGTCTTATc      <  2:2169067‑M2/96‑1 (MQ=255)
                                                                                                ggcCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCCATGCCTGATGCGACGCTTTGCGCGTCTTATCa     >  2:442859‑M2/4‑100 (MQ=255)
                                                                                                ggcCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCCATGCCTGATGCGACGCTTTGCGCGTCTTATCa     >  1:836648‑M2/4‑100 (MQ=255)
                                                                                                 gcCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCTGCATCCGGCAGTCGTGCGCCATGCCTGATGCGACGCTTTGCGCGTCTTATCAg    <  2:2238585‑M2/98‑1 (MQ=255)
                                                                                                 gcCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCCATGCCTGATGCGACGCTTTGCGCGTCTTATTAg    >  2:1170346‑M2/3‑100 (MQ=255)
                                                                                                   cTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCCATGCCTGATGCGACGCTTTGCGCGTCTTATCAGGc  >  1:2272490/1‑100 (MQ=255)
                                                                                                   cTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCCATGCCTGATGCGACGCTTTGCGCGTCTTATCAGGc  >  1:683452/1‑100 (MQ=255)
                                                                                                   cTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCCATGCCTGATGCGACGCTTTGCGCGTCTTATCAGGc  <  1:755996/100‑1 (MQ=255)
                                                                                                   |                                                                                                   
CCCGTATGCCGACTTCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCCATGCCTGATGCGACGCTTTGCGCGTCTTATCAGGC  >  NC_000913/377269‑377467

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.