New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 474269 =NA (NA)4 (0.050) 3/166 NT NA intergenic (+17/+32) amtB/tesB ammonium transporter/acyl‑CoA thioesterase 2
?NC_000913 474296 = NA (NA)intergenic (+44/+5) amtB/tesB ammonium transporter/acyl‑CoA thioesterase 2

AGGAGCGAGAAGGGCTGGATGTCAACAGCCACGGCGAGAATGCCTATAACGCGTAACAAGCACTGCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTATTTTTTTAATTGTGATTACGCATCACCCCTTCCTGAACGGTCGAGGCAACCAGTACGCCGTCTTGGGTATAAAACTCACCGCGCACAAAGCCACGTGCGC  >  NC_000913/474197‑474395
                                                                                                   |                                                                                                   
aGGAGCGAGAAGGGCTGGATGTCAACAGCCACGGCGAGAATGCCTATAACGCGTAACAAGCACTGCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTAt                                                                                                     <  1:515910/100‑1 (MQ=255)
 tatacccaagacggcgtactggttgcctcgaccgttcaggaaggggtgatgcgtaatcacaattaaaaaaatagccggaggtgaaaaccgtccggctgtt                                                                                                    <  1:1857254‑M2/2‑1 (MQ=255)
 tatacccaagacggcgtactggttgcctcgaccgttcaggaaggggtgatgcgtaatcacaattaaaaaaatagccggaggtgaaaaccgtccggctgt                                                                                                     >  2:753056‑M2/99‑99 (MQ=255)
 tatacccaagacggcgtactggttgcctcgaccgttcaggaaggggtgatgcgtaatcacaattaaaaaaatagccggaggtgaaaacagtccggctgtt                                                                                                    >  2:2246507‑M2/99‑100 (MQ=255)
 ggAGCGAGAAGGGCTGGATGTCAACAGCCACGGCGAGAATGCCTATAACGCGTAACCAGCACTGCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTAtt                                                                                                    >  2:1505713/1‑100 (MQ=255)
 ggAGCGAGAAGGGCTGGATGTCAACAGCCACGGCGAGAATGCCTATAACGCGTAACAAGCACTGCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTAtt                                                                                                    >  2:1119895/1‑100 (MQ=255)
    gCGAGAAGGGCTGGATGTCAACAGCCACGGCGAGAATGCCTATAACGCGTAACAAGCACTGCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTAttttt                                                                                                 <  2:1862267/100‑1 (MQ=255)
     cccaagacggcgtactggttgcctcgaccgttcaggaaggggtgatgcgtaatcacaattaaaaaaatagccggaggtgaaaaccgtccggctgtttttt                                                                                                >  2:206952‑M2/95‑100 (MQ=255)
     cccaagacggcgtactggttgcctcgaccgttcaggaaggggtgatgcgtaatcacaattaaaaaaatagccggaggtgaaaaccgtccggctgtttttt                                                                                                >  1:1074394‑M2/95‑100 (MQ=255)
     cGAGAAGGGCTGGATGTCAACAGCCACGGCGAGAATGCCTATAACGCGTAACAAGCACTGCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTAtttttt                                                                                                <  1:1189287/100‑1 (MQ=255)
     cGAGAAGGGCTGGATGTCAACAGCCACGGCGAGAATGCCTATAACGCGTAACAAGCACTGCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTAtttttt                                                                                                <  2:49750/100‑1 (MQ=255)
     cGAGAAGGGCTGGATGTCAACAGCCACGGCGAGAATGCCTATAACGCGTAACAAGCACTGCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTAtttttt                                                                                                <  1:285129/100‑1 (MQ=255)
     cGAGAAGGGCTGGATGTCAACAGCCACGGCGAGAATGCCTATAACGCGTAACAAGCACTGCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTAtttttt                                                                                                >  2:492614/1‑100 (MQ=255)
      gagaAGGGCTGGATGTCAACAGCCACGGCGAGAATGCCTATAACGCGTAACAAGCACTGCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTAttttttt                                                                                               <  1:2074630/100‑1 (MQ=255)
      gagaAGGGCTGGATGTCAACAGCCACGGCGAGAATGCCTATAACGCGTAACAAGCACTGCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTAttttttt                                                                                               >  1:1798696/1‑100 (MQ=255)
      gagaAGGGCTGGATGTCAACAGCCACGGCGAGAATGCCTATAACGCGTAACAAGCACTGCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTAttttttt                                                                                               >  1:346111/1‑100 (MQ=255)
      ccaagacggcgtactggttgcctcgaccgttcaggaaggggtgatgcgtaatcacaattaaaaaaaCAGCCGGACGGTTTTCACCTCCGGCTAttttttt                                                                                               >  1:63537‑M1/67‑100 (MQ=255)
       caagacggcgtactggttgcctcgaccgttcaggaaggggtgatgcgtaatcacaattaaaaaaaCAGCCGGACGGTTTTCACCTCCGGCTATTTTTTTa                                                                                              >  1:2173852‑M1/66‑100 (MQ=255)
       caagacggcgtactggttgcctcgaccgttcaggaaggggtgatgcgtaatcacaattaaaaaaaCAGCCGGACGGTTTTCACCTCCGGCTATTTTTTTa                                                                                              >  2:1246870‑M1/66‑100 (MQ=255)
        gaAGGGCTGGATGTCAACAGCCACGGCGAGAATGCCTATAACGCGTAACAAGCACTGCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTATTTTTTTaa                                                                                             >  2:2173587/1‑100 (MQ=255)
           gggCTGGATGTCAACAGCCACGGCGAGAATGCCTATAACGCGTAACAAGCACTGCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTATTTTTTTAATtg                                                                                          >  1:1507514/1‑100 (MQ=255)
           acggcgtactggttgcctcgaccgttcaggaaggggtgatgcgtaatcacaattaaaaaaaCAGCCGGACGGTTTTCACCTCCGGCTATTTTTTTAATtg                                                                                          >  1:1622876‑M1/62‑100 (MQ=255)
            ggCTGGATGTCAACAGCCACGGCGAGAATGCCTATAACGCGTAACAAGCACTGCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTATTTTTTTAATtgt                                                                                         <  1:442478/100‑1 (MQ=255)
            ggCTGGATGTCAACAGCCACGGCGAGAATGCCTATAACGCGTAACAAGCACTGCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTATTTTTTTAATtgt                                                                                         >  2:1074389/1‑100 (MQ=255)
             gCTGGATGTCAACAGCCACGGCGAGAATGCCTATAACGCGTAACAAGCACTGCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTATTTTTTTAATtgtg                                                                                        <  1:871740/100‑1 (MQ=255)
             gCTGGATGTCAACAGCCACGGCGAGAATGCCTATAACGCGTAACAAGCACTGCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTATTTTTTTAATtgtg                                                                                        <  2:884519/100‑1 (MQ=255)
              cTGGATGTCAACAGCCACGGCGAGAATGCCTATAACGCGTAACAAGCACTGCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTATTTTTTTAATTGTGa                                                                                       <  1:1724395/100‑1 (MQ=255)
               tGGATGTCAACAGCCACGGCGAGAATGCCTATAACGCGTAACAAGCACTGCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTATTTTTTTAATTGTGAt                                                                                      <  2:661890/100‑1 (MQ=255)
                ggATGTCAACAGCCACGGCGAGAATGCCTATAACGCGTAACAAGCACTGCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTATTTTTTTAATTGTGAtt                                                                                     >  1:91326/1‑100 (MQ=255)
                   tGTCAACAGCCACGGCGAGAATGCCTATAACGCGTAACAAGCACTGCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTATTTTTTTAATTGTGATTACg                                                                                  <  1:2201204/100‑1 (MQ=255)
                     tCAACAGCCACGGCGAGAATGCCTATAACGCGTAACAAGCACTGCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTATTTTTTTAATTGTGATTACGCa                                                                                <  1:1867729/100‑1 (MQ=255)
                     tCAACAGCCACGGCGAGAATGCCTATAACGCGTAACAAGCACTGCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTATTTTTTTAATTGTGATTACGCa                                                                                <  2:195516/100‑1 (MQ=255)
                     tCAACAGCCACGGCGAGAATGCCTATAACGCGTAACAAGCACTGCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTATTTTTTTAATTGTGATTACGCa                                                                                <  1:568631/100‑1 (MQ=255)
                      cAACAGCCACGGCGAGAATGCCTATAACGCGTAACAAGCACTGCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTATTTTTTTAATTGTGATTACGc                                                                                 >  2:488009/1‑98 (MQ=255)
                      cAACAGCCACGGCGAGAATGCCTATAACGCGTAACAAGCACTGCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTATTTTTTTAATTGTGATTACGCAt                                                                               >  2:2301044/1‑100 (MQ=255)
                      cAACAGCCACGGCGAGAATGCCTATAACGCGTAACAAGCACTGCAAAAAACAGCCGGACGGTTTTAACCTCAGGCTATTTTTTTAATTGTGATTAAGCaa                                                                               >  2:1867716/1‑99 (MQ=255)
                        aCAGCCACGGCGAGAATGCATATAACGCGTAACAAGCACTGCCAAAAACAGCCGGACGGTTTTCAACTCCGGCTATTTTTTTAATTGTGATTACGCATCa                                                                             >  1:1372791/1‑100 (MQ=255)
                          aGCCACGGCGAGAATGCCTATAACGCGTAACAAGCACTGCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTATTTTTTTAATTGTGATTACGCATCAcc                                                                           <  2:456168/100‑1 (MQ=255)
                          aGCCACGGCGAGAATGCCTATAACGCGTAACAAGCACTGCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTATTTTTTTAATTGTGATTACGCATCAcc                                                                           <  2:2278435/100‑1 (MQ=255)
                           gCCACGGCGAGAATGCCTATAACGCGTAACAAGCACTGCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTATTTTTTTAATTGTGATTACGCATCAccc                                                                          >  1:2117373/1‑100 (MQ=255)
                             cACGGCGAGAATGCCTATAACGCGTAACAAGCACTGCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTATTTTTTTAATTGTGATTACGCATCACCCCt                                                                        <  2:1798683/100‑1 (MQ=255)
                             cACGGCGAGAATGCCTATAACGCGTAACAAGCACTGCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTATTTTTTTAATTGTGATTACGCATCACCCCt                                                                        >  2:2028716/1‑100 (MQ=255)
                                ggCGAGAATGCCTATAACGCGTAACAAGCACTGCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTATTTTTTTAATTGTGATTACGCATCACCCCTTcc                                                                     <  1:1030653/100‑1 (MQ=255)
                                          ccTATAACGCGTAACAAGCACTGCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTATTTTTTTAATTGTGATTACGCATCACCCCTTCCTGAACGGTCg                                                           <  2:956143/100‑1 (MQ=255)
                                          ccTATAACGCGTAACAAGCACTGCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTATTTTTTTAATTGTGATTACGCATCACCCCTTCCTGAACGGTCg                                                           >  1:1792804/1‑100 (MQ=255)
                                          ccTATAACGCGTAACAAGCACTGCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTATTTTTTTAATTGTGATTACGCATCACCCCTTCCTGAACGGTCg                                                           >  1:682832/1‑100 (MQ=255)
                                           cTATAACGCGTAACAAGCACTGCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTATTTTTTTAATTGTGATTACGCATCACCCCTTCCTGAACGGTCGa                                                          >  1:689923/1‑100 (MQ=255)
                                           cTATAACGCGTAACAAGCACTGCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTATTTTTTTAATTGTGATTACGCATCACCCCTTCCTGAACGGTCGa                                                          >  1:149571/1‑100 (MQ=255)
                                              taACGCGTAACAAGCACTGCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTATTTTTTTAATTGTGCTTACGCATCACCCCTTCCTGAACGGTCGAgg                                                        >  2:73830/1‑99 (MQ=255)
                                              taACGCGTAACAAGCACTGCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTATTTTTTTAATTGTGATTACGCATCACCCCTTCCTGAACGGTCGAGGc                                                       <  1:778535/100‑1 (MQ=255)
                                              taACGCGTAACAAGCACTGCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTATTTTTTTAATTGTGATTACGCATAACCCCTTCCTGAACGGTCGAGGc                                                       >  1:667594/1‑100 (MQ=255)
                                              taACGCGTAACAAGCACTGCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTATTTTTTTAATTGTGATTACACATCACCCCTTCCTGAACGGTCGAGGc                                                       >  2:859572/1‑100 (MQ=255)
                                                aCGCGTAACAAGCACTGCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTATTTTTTTAATTGTGATTACGCATCACCCCTTCCTGAACGGTCGAGGCaa                                                     >  1:882900/1‑100 (MQ=255)
                                                 cgcgTAACAAGCACTGCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTATTTTTTTAATTGTGATTACGCATCACCCCTTCCTGAACGGTCGAGGCAAc                                                    >  1:782756/1‑100 (MQ=255)
                                                 cgcgTAACAAGCACTGCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTATTTTTTTAATTGTGATTACGCATCACCCCTTCCTGAACGGTCGAGGCAAc                                                    >  1:1638106/1‑100 (MQ=255)
                                                  gcgTAACAAGCACTGCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTATTTTTTTAATTGTGATTACGCATCACCCCTTCCTGAACGGTCGAGGCAAcc                                                   <  1:2090554/100‑1 (MQ=255)
                                                  gcgTAACAAGCACTGCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTATTTTTTTAATTGTGATTACGCATCACCCCTTCCTGAACGGTCGAGGCAAcc                                                   <  2:1634111/100‑1 (MQ=255)
                                                         aaGCACTGCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTATTTTTTTAATTGTGATTACGCATCACCCCTTCCTGAACGGTCGAGGCAACCAGTACGc                                            >  1:755930/1‑100 (MQ=255)
                                                          aGCACTGCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTATTTTTTTAATTGTGATTACGCATCACCCCTTCCTGAACGGTCGAGGCAACCAGTACGcc                                           <  2:1097705/100‑1 (MQ=255)
                                                            caattaaaaaaatagccggaggtgaaaaccgtccggctgTTTTTTTAATTGTGATTACGCATCACCCCTTCCTGAACGGTCGAGGCAACCAGTACGCCGt                                         >  1:1622876‑M2/40‑100 (MQ=255)
                                                            cACTGCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTATTTTTTTAATTGTGATTACGCATCACCCCTTCCTGAACGGTCGAGGCAACCAGTACGCCgn                                         <  1:300440/100‑2 (MQ=255)
                                                              cTGCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTATTTTTTTAATTGTGATTACGCATCACCCCTTCCTGAACGGTCGAGGCAACCAGTACGCCGTCt                                       >  1:1419338/1‑100 (MQ=255)
                                                                taaaaaaatagccggaggtgaaaaccgtccggctgTTTTTTTAATTGTGATTACGCATCACCCCTTCCTGAACGGTCGAGGCAACCAGTACGCCGTCTTg                                     >  2:1246870‑M2/36‑100 (MQ=255)
                                                                taaaaaaatagccggaggtgaaaaccgtccggctgTTTTTTTAATTGTGATTACGCATCACCCCTTCCTGAACGGTCGAGGCAACCAGTACGCCGTCTTg                                     >  1:2173852‑M2/36‑100 (MQ=255)
                                                                gCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTATTTTTTTAATTGTGATTACGCATCACCCCTTCCTGAACGGTCGAGGCAACCAGTACGCCGTCtt                                      >  2:2164074/1‑99 (MQ=255)
                                                                gCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTATTTTTTTAATTGTGATTACGCATCACCCCTTCCTGAACGGTCGAGGCAACCAGTACGCCGTCTTg                                     >  1:407507/1‑100 (MQ=255)
                                                                gCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTATTTTTTTAATTGTGATTACGCATCACCCCTTCCTGAACGGTCGAGGCAACCAGTACGCCGTCTTg                                     >  2:2106321/1‑100 (MQ=255)
                                                                 cAAAAAACAGCCGGACGGTTTTCACCTCCGGCTATTTTTTTAATTGTGATTACGCATCACCCCTGCCTGAACGGTCGAGGCAACCAGTACGCCGTCTTgg                                    <  2:700322/100‑1 (MQ=255)
                                                                 aaaaaaatagccggaggtgaaaaccgtccggctgTTTTTTTAATTGTGATTACGCATCACCCCTTCCTGAACGGTCGAGGCAACCAGTACGCCGTCTTgg                                    >  1:63537‑M2/35‑100 (MQ=255)
                                                                  aaaaaaCAGCCGGACGGTTTTCACCTCCGGCTATTTTTTTAATTGTGATTACGCATCACCCCTTCCTGAACGGTCGAGGCAACCAGTACGCCGTCTTggg                                   >  1:1074394‑M1/7‑100 (MQ=255)
                                                                  aaaaaaCAGCCGGACGGTTTTCACCTCCGGCTATTTTTTTAATTGTGATTACGCATCACCCCTTCCTGAACGGTCGAGGCAACCAGTACGCCGTCTTggg                                   >  2:206952‑M1/7‑100 (MQ=255)
                                                                      aaCAGCCGGACTGTTTTCACCTCCGGCTATTTTTTTAATTGTGATTACGCATCACCCCTTCCTGAACGGTCGAGGCAACCAGTACGCCGTCTTGGGtata                               >  2:2246507‑M1/3‑100 (MQ=255)
                                                                      aaCAGCCGGACGGTTTTCACCTCCGGCTATTTTTTTAATTGTGATTACGCATCACCCCTTCCTGAACGGTCGAGGCAACCAGTACGCCGTCTTGGGtata                               <  1:1857254‑M1/98‑1 (MQ=255)
                                                                       aCAGCCGGACGGTTTTCACCTCCGGCTATTTTTTTAATTGTGATTACGCATCACCCCTTCCTGAACGGTCGAGGCAACCAGTACGCCGTCTTGGGtata                               >  2:753056‑M1/2‑99 (MQ=255)
                                                                        cAGCCGGACGGTTTTCACCTCCGGCTATTTTTTTTTTTTTTTTTACGCATCACCCCTTCCTGAACGGTCTTGGCAACCAGTACGCCGTCTTggg                                   >  2:2064025/1‑94 (MQ=255)
                                                                        cAGCCGGACGGTTTTCACCTCCGGCTATTTTTTTAATTGTGATTACGCATCACCCCTTCCTGAACGGTCGAGGCAACCAGTACGCCGTCTTGGGTATaaa                             <  1:2117852/100‑1 (MQ=255)
                                                                             ggACGGTTTTCACCTCCGGCTATTTTTTTAATTGTGATTACGCATCACCCCTTCCTGAACGGTCGAGGCAACCAGTACGCCGTCTTGGGTATAAAACTCa                        >  2:679582/1‑100 (MQ=255)
                                                                               aCGGTTTTCACCTCCGGCTATTTTTTTAATTGTGATTACGCATCACCCCTTCCTGAACGGTCGAGGCAACCAGTACGCCGTCTTGGGTATAAAACTCAcc                      >  2:950452/1‑100 (MQ=255)
                                                                                 ggTTTTCCCCTCCGGCTATTTTTTTAATGGTGATTACGCATCACCCCTTCCTGAACGGTCGCGGCAACCAGTACGCCGTCTTGGGTATAAAGCTCACcgc                    <  2:346109/100‑1 (MQ=255)
                                                                                  gTTTTCACCTCCGGCTATTTTTTTTTTTTTTTTTACGCATCACCCCTTCCTGAACGGTCTTTTCAACCAGTACGCCGTCTTGGGTATAATACTCAcc                      >  2:293905/1‑97 (MQ=255)
                                                                                  gTTTTCACCTCCGGCTATTTTTTTAATTGTGATTACGCATCACCCCTTCCTGAACGGTCGAGGCAACCAGTACGCCGTCTTGGGTATAAAACTCACcgcg                   <  1:1119900/100‑1 (MQ=255)
                                                                                     ttCACCTCCGGCTATTTTTTTAATTGTGATTACGCATCACCCCTTCCTGAACGGTCGAGGCAACCAGTACGCCGTCTTGGGTATAAAACTCACCGCGcac                <  1:2159428/100‑1 (MQ=255)
                                                                                      tCACCTCCGGCTATTTTTTTTTTTTTTTTTACGCATCACCCCTTCCTGAACGGTTGAGGCAACCAGTACGCAGTCTTGGGTATAAAACTCACCGCGcaca               >  2:1776461/1‑100 (MQ=255)
                                                                                        aCCTCCGGCTATTTTTTTTTTTTTTTTTACGCATCACACCTTCCTGAACGTTTTTTTCAACCAGTACGCCGTCTTGGGtatcattctca                        >  2:616376/1‑81 (MQ=255)
                                                                                         ccTCCGGCTATTTTTTTAATTGTGATTACGCATCACCCCTTCCTGAACGGTCGAGGCAACCAGTACGCCGTCTTGGGTATAAAACTCACCGCGCACAAAg            >  2:753408/1‑100 (MQ=255)
                                                                                            ccGGCTATTTTTTTTTTTTTTTTTAAGCATCACCCCTTCCTGAACGTTTTAGGCAACCAGTACGCCGTCTTGGGTATAATACTCACCGCGCACaaat            >  2:1715512/1‑96 (MQ=255)
                                                                                            ccGGCTATTTTTTTAATTGTGATTACGCATCACCCCTTCCTGAACGGTCGAGGCAACCAGTACGCCGTCTTGGGTATAAAACTCACCGCGCACAAAGCCa         >  2:160712/1‑100 (MQ=255)
                                                                                            ccGGCTATTTTTTTAATTGTGATTACGCATCACCCCTTCCTGAACGGTCGAGGCAACCAGTACGCCGTCTTGGGTATAAAACTCACCGCGCACAAAGCCa         >  2:2325675/1‑100 (MQ=255)
                                                                                             cGGCTATTTTTTTAATTGTGATTACGCATCACCCCTTCCTGAACGGTCGAGGCAACCAGTACGCCGTCTTGGGTATAAAACTCACCGCGCACAAAGCCAc        <  2:1206750/100‑1 (MQ=255)
                                                                                              ggCTATTTTTTTAATTGTGATTACGCATCACCCCTTCCTGAACGGTCGAGGCAACCAGTACGCCGTCTTGGGTATAAAACTCACCGCGCACAAAGCCACg       >  1:1410786/1‑100 (MQ=255)
                                                                                                   TTTTTTTAATTGTGATTACGCATCACCCCTTCCTGAACGGTCGAGGCAACCAGTACGCCGTCTTGGGTATAAAACTCACCGCGCACAAAGCCACGTgcgc  <  2:1234954‑M2/100‑1 (MQ=255)
                                                                                                   TTTTTTTAATGGTGATTACGCATCACCCCTTCCTGAACGGTCGAGGCAACCAGTACGCCGTCTTGGGTATAAAACTCACCGCGCACAAAGCCACGTgcgc  <  1:58684‑M2/100‑1 (MQ=255)
                                                                                                   |                                                                                                   
AGGAGCGAGAAGGGCTGGATGTCAACAGCCACGGCGAGAATGCCTATAACGCGTAACAAGCACTGCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTATTTTTTTAATTGTGATTACGCATCACCCCTTCCTGAACGGTCGAGGCAACCAGTACGCCGTCTTGGGTATAAAACTCACCGCGCACAAAGCCACGTGCGC  >  NC_000913/474197‑474395

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.