New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 1665136 =NA (NA)5 (0.070) 3/156 NT NA noncoding (1/31 nt) REP125 (repetitive extragenic palindromic) element; contains 1 REP sequences REP125 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913 1665167 = NA (NA)intergenic (+47/‑148) dmsD/clcB twin‑argninine leader‑binding protein for DmsA and TorA/H(+)/Cl(‑) exchange transporter

AATGGCAATCACAACTGTTAATTCCTGTCGCGGTTAAACCGCTGTTTCGATAGGATCACCGTAATATTGCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACGTTTTTTTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCCTCTTTTGCCGCAAAATAGTCGCCCGTGTTTCATTGC  >  NC_000913/1665068‑1665266
                                                                                                   |                                                                                                   
aagaggccagccgcaaaagcagtgcgtgctttaagagataaaaaaacgtgacactgtaacctattattGCCGGATGGTGACGATTACGCGCAATCCGGCa                                                                                                     >  1:342548‑M1/69‑100 (MQ=255)
aaTGGCAATCACAACTGTTAATTCCTGTCGCGGTTAAACCGCTGTTTCGATAGGATCACCGTAATATTGCCGGATGGTGACGATTACGCGCAATCCGGCa                                                                                                     <  1:819170/100‑1 (MQ=255)
 agaggccagccgcaaaagcagtgcgtgctttaagagataaaaaaacgtgacactgtaacctattattgccggattgcgcgtaatcgtcaccatccggcaa                                                                                                    <  1:622738‑M2/2‑1 (MQ=255)
 agaggccagccgcaaaagcagtgcgtgctttaagagataaaaaaacgtgacactgtaacctattattGCCGGATGGTGACGATTACGCGCAATCCGGCaa                                                                                                    >  1:1632447‑M1/68‑100 (MQ=255)
 agaggccagccgcaaaagcagtgcgtgctttaagagataaaaaaacgtgacactgtaacctattattGCCGGATGGTGACGATTACGCGCAATCCGGCaa                                                                                                    >  2:2342087‑M1/68‑100 (MQ=255)
 aTGGCAATCACAACTGTTAATTCCTGTCGCGGTTAAACCGCTGTTTCGATAGGATCACCGTAATATTGCCGGATGGTGACGATTACGCGCAATCCGGCaa                                                                                                    <  1:942526/100‑1 (MQ=255)
   aggccagccgcaaaagcagtgcgtgctttaagagataaaaaaacgtgacactgtaacctattattgccggattgcgcgtaatcgtcaccatccggcaat                                                                                                   <  2:2131290‑M2/3‑1 (MQ=255)
        tCACAACTGTTAATTCCTGTCGCGGTTAAACCGCTGTTTCGATAGGATCACCGTAATATTGCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAgg                                                                                             >  2:1017532/1‑100 (MQ=255)
        agccgcaaaagcagtgcgtgctttaagagataaaaaaacgtgacactgtaacctatgattGCCGGATGGTGACGATTACGCGCAATCCGGCAATAATagn                                                                                             >  1:1131562‑M1/61‑99 (MQ=255)
              cTGTTAATTCCTGTCGCGGTTAAACCGCTGTTTCGATAGGATCACCGTAATATTGCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAg                                                                                       <  2:1188369/100‑1 (MQ=255)
               tGTTAATTCCTTTCGCGGTTAAACCGCTGTTTCGATAGGATCACCGTAATATTTGCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTAc                                                                                         <  2:1867269/97‑1 (MQ=255)
                 ttAATTCCTGTCGCGGTTAAACCGCTGTTTCGATAGGATCACCGTAATATTGCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAgtgt                                                                                    >  2:220228/1‑100 (MQ=255)
                  tAATTCCTGTCGCGGTTAAACCGCTGTTTCTATAGGATCACCGTAATATTGCCGGATGGTGACGTTTACGCGCAATCCGGCAATAATAGGTTACAGTGTc                                                                                   <  2:426183/100‑1 (MQ=255)
                   aaTTCCTGTCGCGGTTAAACCGCTGTTTCGATAGGATCACCGTAATATTGCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCa                                                                                  >  2:1373943/1‑100 (MQ=255)
                    aTTCCTGTCGCGGTTAAACCGCTGTTTCGATAGGATCACCGTAATATTGCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCAc                                                                                 >  1:28205/1‑100 (MQ=255)
                     ttCCTGTCGCGGTTAAACCGCTGTTTCGATAGGATCACCGTAATATTGCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACg                                                                                <  1:776219/100‑1 (MQ=255)
                      tCCTGTCGCGGTTAAACCGCTGTTTCGATAGGATCACCGTAATATTGCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACGt                                                                               <  1:1826740/100‑1 (MQ=255)
                            cgcgGTTAAACCGCTGTTTCGATAGGATCACCGTAATATTGCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACGttttttt                                                                         <  1:153974/100‑1 (MQ=255)
                             gcgGTTAAACCGCTGTTTCGATAGGATCACCGTAATATTGCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACGTTTTTTTa                                                                        <  1:636509/100‑1 (MQ=255)
                             gcgGTTAAACCGCTGTTTCGATAGGATCACCGTAATATTGCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACGTTTTTTTa                                                                        <  1:2258970/100‑1 (MQ=255)
                              cgGTTAAACCGCTGTTTCGATAGGATCACCGTAATATTGCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACGTTTTTTTAt                                                                       >  1:1739949/1‑100 (MQ=255)
                              cgGTTAAACCGCTGTTTCGATAGGATCACCGTAATATTGCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACGTTTTTTTAt                                                                       >  1:2103925/1‑100 (MQ=255)
                               cgatctaCCGCTGTTTCGATAGGATCACCGTAATATTGCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACGTTTTTTTAtc                                                                      <  1:555621/94‑1 (MQ=255)
                                   aaaCCGCTGTTTCGATAGGATCACCGTAATATTGCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACGTTTTTTTATCTCtt                                                                  >  1:1456457/1‑100 (MQ=255)
                                    aaCCGCTGTTTAGATAGGATCACCGTAATATTGCCGGATGGTGACGATTACGCGCAATCCGGCAAGAATAGGTTACAGTGTCACGTTTTTTTATCTCtt                                                                  >  2:1235813/1‑99 (MQ=255)
                                     aCCGCTGTTTCGATAGGATCACCGTAATATTGCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACGTTTTTTTAtcagatcg                                                                >  2:555618/1‑94 (MQ=255)
                                     aCCGCTGTTTCGATAGGATCACCGTAATATTGCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACGTTTTTTTATCTCTTaa                                                                >  2:1831680/1‑100 (MQ=255)
                                      ccGCTGTTTCGATAGGATCACCGTAATATTGCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACGTTTTTTTATCTCTTaaa                                                               >  1:1157229/1‑100 (MQ=255)
                                       cGCTGTTTCGATAGGATCACCGTAATATTGCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACGTTTTTTTATCTCTTAAAg                                                              >  1:2214933/1‑100 (MQ=255)
                                        gCTGTTTCGATAGGATCACCGTAATATTGCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACGTTTTTTTATCTCTTAAAgc                                                             <  2:1844300/100‑1 (MQ=255)
                                          tGTTTCGATAGGATCACCGTAATATTGCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACGTTTTTTTATCTCTTAAAgcac                                                           <  2:1890573/100‑1 (MQ=255)
                                                gATAGGATCACCGTAATATTGCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACGTTTTTTTATCTCTTAAAGCACGCACTg                                                     >  2:231119/1‑100 (MQ=255)
                                                    ggATCACCGTAATATTGCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACGTTTTTTTATCTCTTAAAGCACGCACTGCTTT                                                 >  1:1345290‑M1/1‑100 (MQ=255)
                                                    ggATCACCGTAATATTGCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACGTTTTTTTATCTCTTAAAGCACGCACTGCTTT                                                 >  2:1039571‑M1/1‑100 (MQ=255)
                                                    ggATCACCGTAATATTGCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACGTTTTTTTATCTCTTAAAGCACGCACTGCTTT                                                 <  2:1929910‑M1/100‑1 (MQ=255)
                                                      aTCACCGTAATATTGCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACGTTTTTTTATCTCTTAAAGCACGCACTGCTTTTG                                               <  1:1998048‑M1/100‑1 (MQ=255)
                                                       tCACCGTAATATTGCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACGTTTTTTTATCTCTTAAAGCACGCACTGCTTTTGC                                              <  1:1569664‑M1/100‑1 (MQ=255)
                                                        cACCGTAATATTGCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACGTTTTTTTATCTCTTAAAGCACGCACTGCTTTTGCG                                             <  2:614028‑M1/100‑1 (MQ=255)
                                                          ccGTAATATTGCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACGTTTTTTTATCTCTTAAAGCACGCACTGCTTTTGCGGC                                           >  2:836585‑M1/1‑100 (MQ=255)
                                                           nctattattgccggattgcgcgtaatcgtcaccatccggcAATCATAGGTTACAGTGTCACGTTTTTTTATCTCTTAAAGCACGCACTGCTTTTGCGGCt                                          >  1:1131562‑M2/41‑100 (MQ=255)
                                                            gTAATATTGCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACGTTTTTTTATCTCTTAAAGCACGCACTGCTTTTGCGGCTg                                         >  2:1570119/1‑100 (MQ=255)
                                                               atatTGCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACGTTTTTTTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGcc                                      <  1:584021/100‑1 (MQ=255)
                                                                 attGCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACGTTTTTTTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCct                                     <  2:2131290‑M1/96‑1 (MQ=255)
                                                                  ttgccggattgcgcgtaatcgtcaccatccggcAATAATAGGTTACAGTGTCACGTTTTTTTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCctct                                   >  2:2342087‑M2/34‑100 (MQ=255)
                                                                  ttgccggattgcgcgtaatcgtcaccatccggcAATAATAGGTTACAGTGTCACGTTTTTTTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCctct                                   >  1:1632447‑M2/34‑100 (MQ=255)
                                                                  ttGCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACGTTTTTTTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCctct                                   <  1:622738‑M1/98‑1 (MQ=255)
                                                                   tgccggattgcgcgtaatcgtcaccatccggcAATAATAGGTTACAGTGTCACGTTTTTTTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCCTCtt                                  >  1:342548‑M2/33‑100 (MQ=255)
                                                                    gccggattgcgcgtaatcgtcaccatccggcAATAATAGGTTACAGTGTCACGTTTTTTTTTTTCTTTTAGCACGCACTGCTTTTGCGGCTGGCCTCttt                                 >  2:1006423‑M2/32‑100 (MQ=255)
                                                                    GCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACGTTTTTTTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCCTCttt                                 >  1:194701‑M1/1‑100 (MQ=255)
                                                                    GCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACGTTTTTTTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCCTCttt                                 <  2:669455‑M1/100‑1 (MQ=255)
                                                                    GCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACGTTTTTTTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCCTCttt                                 <  1:520670‑M1/100‑1 (MQ=255)
                                                                    GCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTAACGTTTTTTTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCCTCttt                                 <  2:2131913‑M1/100‑1 (MQ=255)
                                                                     CCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACGTTTTTTTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCCTCtttt                                <  1:1144340‑M1/100‑1 (MQ=255)
                                                                     CCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACGTTTTTTTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCCTCtttt                                >  2:1166250‑M1/1‑100 (MQ=255)
                                                                     CCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACGTTTTTTTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCCTCtttt                                <  1:1494072‑M1/100‑1 (MQ=255)
                                                                     CCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACGTTTTTTTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCCTCtttt                                >  2:877968‑M1/1‑100 (MQ=255)
                                                                      cGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACGTTTTTTTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCCTCTTTTg                               >  1:688721‑M2/1‑99 (MQ=255)
                                                                          tGGTGACGATTACGCTCAATCCGGCAATAATAGGTTACAGTGTCACGTTTTTTTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCCTCTTTTgccgc                           >  1:2318408‑M2/1‑95 (MQ=255)
                                                                           ggTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACGTTTTTTTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCCTCTTTTgccgca                          <  1:498932‑M2/100‑7 (MQ=255)
                                                                            gTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACGTTTTTTTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCCTCTTTTgccgc                           >  2:2223391‑M2/1‑93 (MQ=255)
                                                                              gACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACGTTTTTTTATCTCTTAAAGCACGCACTGCTTTTGCGGCaaaagaggccagccgcaaaa                       <  2:918976‑M1/100‑21 (MQ=255)
                                                                               aCGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACGTTTTTTTATCTCTTAAAGCACGCACTGCTTTTGCGGCaaaagaggccagccgcaaaag                      <  1:416767‑M1/100‑22 (MQ=255)
                                                                                cGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACGTTTTTTTATCTCTTAAAGCACGCACTGCTTTTGCGGCaaaagaggccagccgcaaaagc                     <  1:1983030‑M1/100‑23 (MQ=255)
                                                                                 gATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACGTTTTTTTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCCTCTTTTGCCGCAAAATAg                    <  2:893651/100‑1 (MQ=255)
                                                                                      cgcgCAATCCGGCAATAATAGGTTACAGTGTCACGTTTTTTTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCCTCTTTTGCCGCAAAATAGTCGcc               >  1:902091/1‑100 (MQ=255)
                                                                                      cgcgCAATCCGGCAATAATAGGTTACAGTGTCACGTTTTTTTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCCTCTTTTGCCGCAAAATAGTCGcc               >  2:77291/1‑100 (MQ=255)
                                                                                      cgcgCAATCCGGCAATAATAGGTTACAGTGTCACGTTTTTTTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCCTCTTTTGCCGCAAAATAGTCGc                >  2:934804/1‑99 (MQ=255)
                                                                                       ccgatctccggcaATAATAGGTTACAGTGTCACGTTTTTTTATCTCTTAAAGCACGCACTGCTTTTGCGGCaaaagaggccagccgcaaaagcagtgcgt              <  1:1619668‑M1/94‑30 (MQ=255)
                                                                                        cgcAATCCGGCAATAATAGGTTACAGTGTCACGTTTTTTTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCCTCTTTTGCCGCAAAATAGTCGCCCg             >  1:719512/1‑100 (MQ=255)
                                                                                           aaTCCGGCAATAATAGGTTACAGTGTCACGTTTTTTTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCCTCTTTTGCCGCAAAATAGTCGCCCgtgn          <  1:1039576/100‑2 (MQ=255)
                                                                                              ccggcAATAATAGGTTACACTGTCACGTTTTTTTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCCTCTTTTGCCGCACAATAGTCGCCCGTGTTTc       >  1:1932097‑M2/6‑100 (MQ=255)
                                                                                              ccGGCAATAATAGGTTACAGTGTCACGTTTTTTTATCTCTTAAAGCACGCACTGCTTTTGCGGCaaaagaggccagccgcaaaagcagtgcgtagatcgg       >  2:1619657‑M1/1‑64 (MQ=255)
                                                                                               cggcAATAATAGGTTACAGTGTCACGTTTTTTTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCCTCTTTTGCCGCAAAATAGTCGCCCGTGTTTCa      <  1:1774736‑M2/96‑1 (MQ=255)
                                                                                               cggcAATAATAGGTTACAGTGTCACGTTTTTTTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCCTCTTTTGCCGCAAAATAGTCGCCCGTGTTTCa      >  1:130414‑M2/5‑100 (MQ=255)
                                                                                                ggcAATAATAGGTTACAGTGTCACGTTTTTTTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCCTCTTTTGCCGCAAAATAGTCGCCCGTGTTTCAt     <  2:1494063‑M2/97‑1 (MQ=255)
                                                                                                ggcAATAATAGGTTACAGTGTCACGTTTTTTTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCCTCTTTTGCCGCAAAATAGTCGCCCGTGTTTCAt     <  2:1144335‑M2/97‑1 (MQ=255)
                                                                                                ggcAATAATAGGTTACAGTGTCACGTTTTTTTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCCTCTTTTGCCGCAAAATAGTCGCCCGTGTTTCAt     <  1:1706400‑M2/97‑1 (MQ=255)
                                                                                                 gCAATAATAGGTTACAGTGTCACGTTTTTTTATCTCTTAAAGCACGCACTGCTTTTGCGGCaaaagaggccagccgcaaaagcagtgcgtgctttaagag    <  1:1479688‑M1/100‑40 (MQ=255)
                                                                                                  cAATAATAGGTTACAGTGTCACGTTTTTTTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCCTCTTTTGCCACAAAATAGTCGCCCGTGTTTCATTg   <  1:641475‑M2/99‑1 (MQ=255)
                                                                                                   AATAATAGGTTACAGTGTCACGTTTTTTTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCCTCTTTTGCCGCAAAATAGTCGCCCGTGTTTCATTGc  <  2:325779‑M2/100‑1 (MQ=255)
                                                                                                   |                                                                                                   
AATGGCAATCACAACTGTTAATTCCTGTCGCGGTTAAACCGCTGTTTCGATAGGATCACCGTAATATTGCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACGTTTTTTTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCCTCTTTTGCCGCAAAATAGTCGCCCGTGTTTCATTGC  >  NC_000913/1665068‑1665266

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.