| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,296,381 | +GC | intergenic (+587/+55) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,380 | 1 | . | C | 86.7% | 86.5 / 8.9 | 30 | intergenic (+586/+56) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Reads supporting (aligned to +/- strand): ref base . (0/4); new base C (12/14); total (12/18) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.30e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| * | NC_000913 | 4,296,380 | 2 | . | G | 86.7% | 82.6 / 10.0 | 30 | intergenic (+586/+56) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Reads supporting (aligned to +/- strand): ref base . (0/4); new base G (12/14); total (12/18) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.30e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTT‑‑A‑‑C‑C‑‑GC‑ATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACC > NC_000913/4296328‑4296470 || gACAGCCCAATAGCCTTATTCGGTGTAATTTTGTATGCCGGATAAGGCCTCT‑‑A‑‑C‑CCAGC‑ATAAGATATCAATGCCTGATGCGACGCTTGCCGCGTCTTa < 1:220123/99‑1 (MQ=0) tGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTT‑‑ACGC‑C‑‑GC‑ATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAAc > 2:243452/1‑100 (MQ=255) tGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTT‑‑ACGC‑C‑‑GC‑ATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAAc < 1:442273/100‑1 (MQ=255) gATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTT‑‑ACGC‑C‑‑GC‑ATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAAc < 1:1067883/99‑1 (MQ=0) aTTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTT‑‑ACGC‑C‑‑GC‑ATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCg < 2:2020485/100‑1 (MQ=255) tttAGCGTGATTTTGTAGGTCGGATAAGGCGTTT‑‑ACGC‑C‑‑GC‑ATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCg > 1:2130349/1‑99 (MQ=255) tttAGCGTGACTTTGTAGGTCGGATAACGCGTTTCCG‑‑C‑C‑‑GC‑GTCCTACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAAcc < 1:632255/98‑1 (MQ=11) ttAGCGTGATTTTGTAGGTCGTTTAAGGCGTTTGCG‑‑C‑C‑‑GC‑ATCCGACATCAATGCCTAATGCGCCGCTTGCCGCGTCTTATCAGGTCTATCTTAACCGtt < 1:1280237/100‑1 (MQ=11) aGCGTGATTTTGTAGGTCGGATAAGGCGTTT‑‑ACGC‑C‑‑GC‑ATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTgg > 2:1535657/1‑100 (MQ=255) gCGTGATTTTGTAGGTCGGATAAGGCGTTT‑‑ACGC‑C‑‑GC‑ATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGt < 1:2198028/100‑1 (MQ=255) gCGTGATTTTGTAGGTCGGATAAGGCGTTT‑‑ACGC‑C‑‑GC‑ATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGt < 1:839314/100‑1 (MQ=255) gCGTGATTTTGTAGGTCGGATAAGGCGTTT‑‑ACGC‑C‑‑GC‑ATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGt > 1:507779/1‑100 (MQ=255) gTGATTTTGTAGGTCGGATAAGGCGTTT‑‑ACGC‑C‑‑GC‑ATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTa > 2:1593281/1‑100 (MQ=255) gTGATTTTGTAGGTCGGATAAGGCGTTT‑‑ACGC‑C‑‑GC‑ATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTa > 1:973872/1‑100 (MQ=255) gATTTTGTAGGTCGGATAAGGCGTTT‑‑ACGC‑C‑‑GC‑ATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAAt < 1:1029149/100‑1 (MQ=255) gATTTTGTAGGTCGGATAAGGCGTTT‑‑ACGC‑C‑‑GC‑ATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAAt < 2:1234071/100‑1 (MQ=255) gATTTTCTGGGTCGGATAAGGCGTTT‑‑A‑‑CGC‑‑CCGATCCGGCATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGt < 1:1752515/96‑1 (MQ=14) ttGTAGGTCGGATAAGGCGTTT‑‑ACGC‑C‑‑GC‑ATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAAttttt > 1:561706/1‑100 (MQ=255) tAGGTCGGATAAGGCGTTT‑‑ACGC‑C‑‑GC‑ATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCaa < 1:1778761/100‑1 (MQ=255) aGGTCGGATAAGGCGTTT‑‑ACGC‑C‑‑GC‑ATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCaaa > 2:433804/1‑100 (MQ=255) ggTCGGATAAGGCGTTT‑‑ACGC‑C‑‑GC‑ATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAAc < 2:773671/100‑1 (MQ=255) ggTCGGATAAGGCGTTT‑‑ACGC‑C‑‑GC‑ATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAAc > 2:933839/1‑100 (MQ=255) ggTCGGATAAGGCGTTT‑‑ACGC‑C‑‑GC‑ATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTAGTTAATTTTTCAAAc > 2:2191994/1‑100 (MQ=17) gTCGGATAAGGCGTTT‑‑ACGC‑C‑‑GC‑ATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAAct < 1:401739/100‑1 (MQ=255) ggATAAGGCGTTT‑‑ACGC‑C‑‑GC‑ATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCtt > 1:2208960/1‑100 (MQ=255) aTAAGGCGTTT‑‑ACGC‑C‑‑GC‑ATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTca < 1:259590/100‑1 (MQ=255) aTAAGGCGTTT‑‑ACGC‑C‑‑GC‑ATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTca < 1:1017876/100‑1 (MQ=255) aaGGCGTTT‑‑ACGC‑C‑‑GC‑ATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTcaca < 1:1114225/100‑1 (MQ=255) ggCGTTT‑‑ACGC‑C‑‑GC‑ATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCCAACTCTTCCCAcc > 2:748954/1‑100 (MQ=18) ggCGTTT‑‑ACGC‑C‑‑GC‑ATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACAcc < 1:344716/100‑1 (MQ=255) || GACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTT‑‑A‑‑C‑C‑‑GC‑ATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACC > NC_000913/4296328‑4296470 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |