| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3377767 | 86 (0.940) | 6 (0.070) | 5/176 | 10.8 | 7.7% | intergenic (‑347/+48) | sspA/rpsI | stringent starvation protein A, phage P1 late gene activator, RNAP‑associated acid‑resistance protein, inactive glutathione S‑transferase homolog/30S ribosomal subunit protein S9 |
| ? | NC_000913 | = 3377771 | 68 (0.840) | intergenic (‑351/+44) | sspA/rpsI | stringent starvation protein A, phage P1 late gene activator, RNAP‑associated acid‑resistance protein, inactive glutathione S‑transferase homolog/30S ribosomal subunit protein S9 | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below cutoff threshold. | |||||||||||
TAGTCCCTTATTGGCGATGTGGTTTTTGTTTTACCTGTCTGTCAGGTGGCAGCAAAAAGCAACTTTCCAGTTTTTACGCTGATTCAGATTTTAGCTATAAAAAAACCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3377658‑3377767‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaaacccgcTTCGGCGGGTTTTTTTATAGCTAAAATCTGAATCAGCGTAAAAACTGGAAAGTTGCTTTTTGCTGCCACCTGACAGACAGGTAAAACAAAAACCACATC < NC_000913/3377771‑3377673 TAGTCCCTTATTGGCGATGTGGTTTTTGTTTTACCTGTCTGTCAGGTGGCAGCAAAAAGCAACTTTCCAGTTTTTACGCTGATTCAGATTTTAGCTATAA > 2:1003365/1‑100 TCCCTTATTGGCGATGTGGTTTTTGTTTTACCTGTCTGTCAGGTGGCAGCAAAAAGCAACTTTCCAGTTTTTACGCTGATTCAGATTTTAGCTATAAAAA < 1:1632630/100‑1 CCCTTATTGGCGATGTGGTTTTTGTTTTACCTGTCTGTCAGGTGGCAGCAAAAAGCAACTTTCCAGTTTTTACGCTGATTCAGATTTTAGCTATAAAAAA > 1:432335/1‑100 CCCTTATTGGCGATGTGGTTTTTGTTTTACCTGTCTGTCAGGTGGCAGCAAAAAGCAACTTTCCAGTTTTTACGCTGATTCAGATTTTAGCTATAAAAAA < 2:2113978/100‑1 CTTATTGGCGATGTGGTTTTTGTTTTACCTGTCTGTCAGGTGGCAGCAAAAAGCAACTTTCCAGTTTTTACGCTGATTCAGATTTTAGCTATAAAAAAAC < 2:108407/100‑1 TTGGCGATGTGGTTTTTGTTTTACCTGTCTGTCAGGTGGCAGCAAAAAGCAACTTTCCAGTTTTTACGCTGATTCAGATTTTAGCTATAAAAAAACCCGC < 2:522496/100‑1 TGTTTTACCTGTCTGTCAGGTGGCAGCAAAAAGCAACTTTCCAGTTTTTACGCTGATTCAGATTTTAGCTATAAAAAAACCCGCTTCGGCGGGTTTTTTT < 1:2181840/100‑1 GTTTTACCTGTCTGTCAGGTGGCAGCAAAAAGCAACTTTCCAGTTTTTACGCTGATTCAGATTTTAGCTATAAAAAAACCCGCTTCGGCGGGTTTTTTTA > 1:1176174/1‑100 GTTTTACCTGTCTGTCAGGTGGCAGCAAAAAGCAACTTTCCAGTTTTTACGCTGATTCAGATTTTAGCTATAAAAAAACCCGCTTCGGCGGGTTTTTTT < 2:942821/99‑1 TTACCTGTCTGTCAGGTGGCAGCAAAAAGCAACTTTCCAGTTTTTACGCTGATTCAGATTTTAGCTATAAAAAAACCCGCTTCGGCGGGTTTTTTTATAG < 2:1176176/100‑1 GGTGGCAGCAAAAAGCAACTTTCCAGTTTTTACGCTGATTCAGATTTTAGCTATAAAAAAACCCGCTTCGGCGGGTTTTTTTATAGCTAAAATCTGAATC < 2:90666/100‑1 AGCAAAAATCAACTTTCCAGTGTTGACGCTGAGTCAGATTTTAGCTATAAAAAAACCCGCTTCGGCGGGTTTTTTTATAGCTAAAATCTGAATCAGCGTA < 2:2080687/100‑1 ttccgatctCCCGCTTCGGCGGGTTTTTTTATAGCTAAAATCTGAATCAGCGTAAAAACTGGAAAGTTGCTTTTTGCTGCCACCTGACAGACAGGTAAAA < 1:728333/91‑1 AAAAAACCCGCTTCGGCGGGTTTTTTTATAGCTAAAATCTGAATCAGCGTAAAAACTGGAAAGTTGCTTTTTGCTGCCACCTGACAGACAGGTAAAACAA < 1:573154/100‑1 AAAAAACCCGCTTCGGCGGGTTTTTTTATAGCTAAAATCTGAATCAGCGTAAAAACTGGAAAGTTGCTTTTTGCTGCCACCTGACAGACAGGTAAAACAA > 2:1825799/1‑100 AAAAAACCCGCTTCGGCGGGTTTTTTTATAGCTAAAATCTGAATCAGCGTAAAAACTGGAAAGTTGCTTTTTGCTGCCACCTGACAGACAGGTAAAACAA > 2:1825735/1‑100 AAAAACCCGCTTCGGCGGGTTTTTTTATAGCTAAAATCTGAATCAGCGTAAAAACTGGAAAGTTGCTTTTTGCTGCCACCTGACAGACAGGTAAAACAAA > 2:107383/1‑100 AAAACCCGCTTCGGCGGGTTTTTTTATAGCTAAAATCTGAATCAGCGTAAAAACTGGAAAGTTGCTTTTTGCTGCCACCTGACAGACAGGTAAAACAAAA > 2:719120/1‑100 AAAACCCGCTTCGGCGGGTTTTTTTATAGCTAAAATCTGAATCAGCGTAAAAACTGGAAAGTTGCTTTTTGCTGCCACCTGACAGACAGGTAAAACAAAA < 1:1238744/100‑1 AAACCCGCTTCGGCGGGTTTTTTTATAGCTAAAATCTGAATCAGCGTAAAAACTGGAAAGTTGCTTTTTGCTGCCACCTGACAGACAGGTAAAACAAAAA < 1:958215/100‑1 ACCCGCTTCGGCGGGTTTTTTTATAGCTAAAATCTGAATCAGCGTAAAAACTGGAAAGTTGCTTTTTGCTGCCACCTGACAGACAGGTAAAACAAAAACC < 1:2125178/100‑1 CCCGCTTCGGCGGGTTTTTTTATAGCTAAAATCTGAATCAGCGTAAAAACTGGAAAGTTGCTTTTTGCTGCCACCTGACAGACAGGTAAAAagatcggaa > 2:728334/1‑91 CCCGCTTCGGCGGGTTTTTTTATAGCTAAAATCTGAATCAGCGTAAAAACTGGAAAGTTGCTTTTTGCTGCCACCTGACAGACAGGTAAAACAAAAACCA > 1:1615648/1‑100 CCCGCTTCGGCGGGTTTTATTATAGCTAAAATCTGAATCAGCGTAAAAACTGGAAAGTTGCTTTTTTCTGCCACCTGACAGACAGGTAAAACAAAAACC < 1:2092558/99‑1 GCTTCGGCGGGTTTTTTTATAGCTAAAATCTGAATCAGCGTAAAAACTGGAAAGTTGCTTTTTGCTGCCACCTGACAGACAGGTAAAACAAAAACCACAn < 1:1877296/100‑2 CTTCGGCGGGTTTTTTTATAGCTAAAATCTGAATCAGCGTAAAAACTGGAAAGATGCTTTTTGCTGCCACCTGACAGACAGGTAAAACAAAAACCACATC < 1:1241524/100‑1 CTTCGGCGGGTTTTTTTATAGCTAAAATCTGAATCAGCGTAAAAACTGGAAAGATGCTTTTTGCTGCCACCTGACAGACAGGTAAAACAAAAACCACATC < 1:1240747/100‑1 TAGTCCCTTATTGGCGATGTGGTTTTTGTTTTACCTGTCTGTCAGGTGGCAGCAAAAAGCAACTTTCCAGTTTTTACGCTGATTCAGATTTTAGCTATAAAAAAACCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3377658‑3377767‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaaacccgcTTCGGCGGGTTTTTTTATAGCTAAAATCTGAATCAGCGTAAAAACTGGAAAGTTGCTTTTTGCTGCCACCTGACAGACAGGTAAAACAAAAACCACATC < NC_000913/3377771‑3377673 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |