| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 460,106 | A→T | I407F (ATC→TTC) | lon → | DNA‑binding ATP‑dependent protease La |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 460,106 | 0 | A | T | 98.5% | 238.3 / NA | 69 | I407F (ATC→TTC) | lon | DNA‑binding ATP‑dependent protease La |
| Reads supporting (aligned to +/- strand): ref base A (0/1); major base T (29/38); minor base G (0/1); total (29/40) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CGTAAATATGTCCGTATGGCGCTGGGCGGCGTGCGTGATGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGTAAACTGATCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATGAGATCGACAAAATGTCTTCTGACATGCGTGGCGATCCGGCCTC > NC_000913/460010‑460200 | cGTAAATATGTCCGTATGGCGCTGGGCGGCGTGCGTGATGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGTAAACTGTTcc < 1:2010334/100‑1 (MQ=255)cGTAAATATGTCCGTATGGCGCTGGGCGGCGTGCGTGATGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGTAAACTGTTcc < 2:278732/100‑1 (MQ=255)cGTAAATATGTCCGTATGGCGCTGGGCGGCGTGCGTGATGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGTAAACTGTTcc > 2:1532242/1‑100 (MQ=255)cGTAAATATGTCCGTATGGCGCTGGGCGGCGTGCGTGATGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGTAAACTGTTcc < 1:910849/100‑1 (MQ=255)cGTAAATATGTCCGTATGGCGCTGGGCGGCGTGCGTGATGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGTAAACTGTTcc > 1:910033/1‑100 (MQ=255) aaTATGTCCGTATGGCGCTGGGCGGCGTGCGTGATGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGTAAACTGTTCCAGaa > 1:1481021/1‑100 (MQ=255) tatGTCCGTATGGCGCTGGGCGGCGTGCGTGATGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGTAAACTGTTCCAGaaaa > 1:1630962/1‑100 (MQ=255) gTCCGTATGGCGCTGGGCGGCGTGCGTGATGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGTAAACTGTTCCAGAAAATgg < 2:1723646/100‑1 (MQ=255) tCCGTATGGCGCTGGGCGGCGTGCGTGATGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGTAAACTGTTCCAGAAAATGGc < 1:1094647/100‑1 (MQ=255) ccGTATGGCGCTGGGCGGCGTGCGTGATGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGTAAACTGTTCCAGAAAATGGCg > 2:1967308/1‑100 (MQ=255) cGTATGGCGCTGGGCGGCGTGCGTGATGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGTAAACTGTTCCAGAAAATGGCGa < 2:1441360/100‑1 (MQ=255) gTATGGCGCTGGGCGGCGTGCGTGATGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGTAAACTGTTCCAGAAAATGGCGaa > 2:1304989/1‑100 (MQ=255) tATGGCGCTGGGCGGCGTGCGTGATGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGTAAACTGTTCCAGAAAATGGCGaaa < 2:356015/100‑1 (MQ=255) aTGGCGCTGGGCGGCGTGCGTGATGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGTAAACTGTTCCAGAAAATGGCGAAAg > 1:975721/1‑100 (MQ=255) tGGGCGGCGTGCGTGATGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGCAAACTGTTCCAGAAAATGGCGAAAGTGGGCGt < 2:2229985/100‑1 (MQ=255) gggCGGCGTGCGTGATGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGTAAACTGTTCCAGAAAATGGCGAAAGTGGGCGTg > 2:237242/1‑100 (MQ=255) gggCGGCGTGCGTGATGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGTAAACTGTTCCAGAAAATGGCGAAAGTGGGCGTg > 2:916991/1‑100 (MQ=255) gggCGGCGTGCGTGATGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGTAAACTGTTCCAGAAAATGGCGAAAGTGGGCGTg < 2:596847/100‑1 (MQ=255) ggcggcGTGCGTGATGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGTAAACTGTTCCAGAAAATGGCGAAAGTGGGCGTGa > 2:222128/1‑100 (MQ=255) ggcggcGTGCGTGATGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGTAAACTGTTCCAGAAAATGGCGAAAGTGGGCGTGa < 1:755568/100‑1 (MQ=255) gcatgcgtgATGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGTAAACTGTTCCAGAAAATGGCGAAAGTGGGCGTGaaaaa < 1:1884651/97‑1 (MQ=255) cgtgcgtgATGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGTAAACTGTTCCAGAAAATGGCGAAAGTGGGCGTGAAAAAc < 2:1244224/100‑1 (MQ=255) gtgcgtgATGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGTAAACTGTTCCAGAAAATGGCGAAAGTGGGCGTGAAAAAcc < 1:36058/100‑1 (MQ=255) tgcgtgATGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGTAAACTGTTCCAGAAAATGGCGAAAGT‑GGCGTGAAAAACCCg < 2:685549/100‑1 (MQ=255) gtgATGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGTAAACTGTTCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCt < 2:834088/100‑1 (MQ=255) tgatgaAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGTAAACTGTTCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTg < 1:1557250/100‑1 (MQ=255) tgatgaAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGTAAACTGTTCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTg < 1:499438/100‑1 (MQ=255) gatgaAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGTAAACTGTTCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGt > 2:1729558/1‑100 (MQ=255) atgaAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGTAAACTGTTCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGtt < 1:277882/100‑1 (MQ=255) tgaAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGTAAACTGTTCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTc > 2:937015/1‑100 (MQ=255) gaAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGTAAACTGTTCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTcc > 1:1547304/1‑100 (MQ=255) aaGCGGAAATCCGTGGTCACCGCCGTCCTTACATCGGTTCTATGCCGGGTAAACTGTTCCAGAAAATGGCGAAAGTGGGCGTGAAAAAACCGCTGTTCCt > 1:1055180/1‑100 (MQ=255) cGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGTAAACTGTTCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCt > 2:290641/1‑100 (MQ=255) cGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGTAAACTGTTCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCt < 1:1532235/100‑1 (MQ=255) gAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGTAAACTGTTCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCg < 1:822743/100‑1 (MQ=255) gAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGTAAACTGTTCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCg > 1:1126011/1‑100 (MQ=255) aTCTGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGTAAACTGTTCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATg < 1:365747/100‑1 (MQ=255) aTCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGTAAACTGATCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATg < 1:1285731/100‑1 (MQ=255) tCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGTAAACTGTTCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATga < 1:1967298/100‑1 (MQ=255) tCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGTAAACTGTTCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATga < 1:1257454/100‑1 (MQ=255) tCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGTAAACTGGTCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATga < 2:1885821/100‑1 (MQ=255) cGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGTAAACTGTTCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATgaga > 2:1218850/1‑100 (MQ=255) cGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGTAAACTGTTCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATgaga > 1:2213541/1‑100 (MQ=255) gTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGTAAACTGTTCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATGAGAt > 2:365748/1‑100 (MQ=255) ggTCACCGCCGTACTTACATCGGTTCTATGCCGGGTAAACTGTTCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATGAGATCg < 2:2005718/100‑1 (MQ=255) tCACCGCCGTACTTACATCGGTTCTATGCCGGGTAAACTGTTCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATGAGATCGAc > 1:707035/1‑100 (MQ=255) cACCGCCGTACTTACATCGGTTCTATGCCGGGTAAACTGTTCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATGAGATCGACa < 1:237242/100‑1 (MQ=255) ccgccgTACTTACATCGGTTCTATGCCGGGTAAACTGTTCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATGAGATCGACaaa > 1:1083396/1‑100 (MQ=255) ccgTACTTACATCGGTTCTATGCCGGGTAAACTGTTCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATGAGATCGACAAAATg < 2:1481028/100‑1 (MQ=255) tACTTACATCGGTTCTATGCCGGGTAAACTGTTCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATGAGATCGACAAAATGtct > 1:1593111/1‑100 (MQ=255) ttACATCGGTTCTATGCCGGGTAAACTGTTCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATGAGATCGACAAAATGtcttct < 2:698395/100‑1 (MQ=255) tgaCATCGGTTCTATGCCGGGTAAACTGTTCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATGAGATCGACAAAATGtcttct < 2:1741360/98‑1 (MQ=255) tACATCGGTTCTATGCCGGGTAAACTGTTCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATGAGATCGACAAAATGTCTTCTg > 1:677873/1‑100 (MQ=255) tACATCGGTTCTATGCCGGGTAAACTGTTCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATGAGATCGACAAAATGTCTTCTg > 1:205911/1‑100 (MQ=255) tACATCGGTTCTATGCCGGGTAAACTGTTCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATGAGATCGACAAAATGTCTTCTg > 2:561608/1‑100 (MQ=255) tACATCGGTTCTATGCCGGGTAAACTGTTCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATGAGATCGACAAAATGTCTTCTg > 1:1920852/1‑100 (MQ=255) aCATCGGTTCTATGCCGGGTAAACTGTTCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATGAGATCGACAAAATGTCTTCTGa < 1:1229905/100‑1 (MQ=255) gTTCTATGCCGGGTAAACTGTTCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATGAGATCGACAAAATGTCTTCTGACATGCg > 1:960004/1‑100 (MQ=255) cTATGCCGGGTAAACTGTTCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATGAGATCGACAAAATGTCTTCTGACATGCGTgg < 2:707036/100‑1 (MQ=255) tATGCCGGGTAAACTGTTCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATGAGATCGACAAAATGTCTTCTGACATGCGTGGc < 2:1633350/100‑1 (MQ=255) tATGCCGGGTAAACTGTTCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATGAGATCGACAAAATGTCTTCTGACATGCGTGGc > 2:1807783/1‑100 (MQ=255) gCCGGGTAAACTGTTCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATGAGATCGACAAAATGTCTTCTGACATGCGTGGCGAt < 2:910034/100‑1 (MQ=255) ccGGGTAAACTGTTCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATTAGATCGACAAAATGTCTTCTGACATGCGTGGCGATc < 2:1566546/100‑1 (MQ=255) cGGGTAAACTGTTCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATGAGATCGACAAAATGTCTTCTGACATGCGTGGCGATcc > 2:1629200/1‑100 (MQ=255) ggTAAACTGTTCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATGAGATCGACAAAATGTCTTCTGACATGCGTGGCGATCCgg < 2:84632/100‑1 (MQ=255) tAAACTGTTCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATGAGATCGACAAAATGTCTTCTGACATGCGTGGCGATCCGGcc < 1:561607/100‑1 (MQ=255) tAAACTGTTCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATGAGATCGACAAAATGTCTTCTGACATGCGTGGCGATCCGGcc < 2:1547312/100‑1 (MQ=255) tAAACTGTTCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATGAGATCGACAAAATGTCTTCTGACATGCGTGGCGATCCGGcc < 2:1593120/100‑1 (MQ=255) aaCTGTTCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATGAGATCGACAAAATGTCTTCTGACATGCGTGGCGATCCGGCctc < 1:1230786/100‑1 (MQ=255) | CGTAAATATGTCCGTATGGCGCTGGGCGGCGTGCGTGATGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGTAAACTGATCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATGAGATCGACAAAATGTCTTCTGACATGCGTGGCGATCCGGCCTC > NC_000913/460010‑460200 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |