Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,077,116 T→C E589E (GAA→GAG putA ← fused DNA‑binding transcriptional regulator/proline dehydrogenase/pyrroline‑5‑carboxylate dehydrogenase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,077,1160TC98.9% 316.8 / ‑4.6 88E589E (GAA→GAGputAfused DNA‑binding transcriptional regulator/proline dehydrogenase/pyrroline‑5‑carboxylate dehydrogenase
Reads supporting (aligned to +/- strand):  ref base T (1/0);  new base C (48/39);  total (49/39)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.91e-01

GCCCTGCCGAGTTGTCGCGCCCGTGACCGTAAAGATCGCGCGGCAGGGGAATTTTCGGATGCGGTAATCCAGTTTGCCCTTCCTGTTGCGCCAGTTTTTCTACAGCAGTGACCGGATCGGCGACCAGTTCATCCAGTGGCAAAGAGGTGTCGGCAATACGGTTAACAAACGAGGTGTTAGCACCGTTTTCCAGC  >  NC_000913/1077019‑1077212
                                                                                                 |                                                                                                
gCCCTGCCGAGTTGTCGCGCCCGTGACCGTAAAGATCGCGCGGCAGGGGAATTTTCGGATGCGGTAATCCAGTTTGCCCTTCCTGTTGCGCCAGTTtctc                                                                                                <  2:498214/100‑1 (MQ=255)
  ccTGCCGAGTTGTCGCGCCCGTGACCGTAAAGATCGCGCGGCAGGGGAATTTTCGGATGCGGTAATCCAGTTTGCCCTTCCTGTTGCGCCAGTTTCTCTa                                                                                              <  2:709564/100‑1 (MQ=255)
  ccTGCCGAGTTGTCGCGCCCGTGACCGTAAAGATCGCGCGGCAGGGGAATTTTCGGATGCGGTAATCCAGTTTGCCCTTCCTGTTGCGCCAGTTTCTCTa                                                                                              <  1:823419/100‑1 (MQ=255)
   cTGCCGAGTTGTCGCGCCCGTGACCGTAAAGATCGCGCGGCAGGGGAATTTTCGGATGCGGTAATCCAGTTTGCCCTTCCTGTTGCGCCAGTTTCTCTAc                                                                                             >  2:1212349/1‑100 (MQ=255)
   cTGCCGAGTTGTCGCGCCCGTGACCGTAAAGATCGCGCGGCAGGGGAATTTTCGGATGCGGTAATCCAGTTTGCCCTTCCTGTTGCGCCAGTTTCTCTAc                                                                                             >  1:1632195/1‑100 (MQ=255)
   cTGCCGAGTTGTCGCGCCCGTGACCGTAAAGATCGCGCGGCAGGGGAATTTTCGGATGCGGTAATCCAGTTTGCCCTTCCTGTTGCGCCAGTTTCTCTAc                                                                                             >  2:360014/1‑100 (MQ=255)
     gCCGAGTTGACGCGCCCGTGACCGTAAAGATCGCGCGGCAGGGGAATTTTCGGATGCGGTAATCCAGTTTGCCCTTCCTGTTGCGCCAGTTTCTCTAca                                                                                            <  2:207246/99‑1 (MQ=255)
      ccGAGTTGTCGCGCCCGTGACCGTAAAGATCGCGCGGCAGGGGAATTTTCGGATGCGGTAATCCAGTTTGCCCTTCCTGTTGCGCCAGTTTCTCTAcagc                                                                                          >  1:1968254/1‑100 (MQ=255)
        gAGTTGTCGCGCCCGTGACCGTAAAGATCGCGCGGCAGGGGAATTTTCGGATGCGGTAATCCAGTTTGCCCTTCCTGTTGCGCCAGTTTCTCTAcagcag                                                                                        <  1:314947/100‑1 (MQ=255)
         aGTTGTCGCGCCCGTGACCGTAAAGATCGCGCGGCAGGGGAATTTTCGGATGCGGTAATCCAGTTTGCCCTTCCTGTTGCGCCAGTTTCTCTACAGCAGt                                                                                       >  2:1093729/1‑100 (MQ=255)
          gTTGTCGCGCCCGTGACCGTAAAGATCGCGCGGCAGGGGAATTTTCGGATGCGGTAATCCAGTTTGCCCTTCCTGTTGCGCCAGTTTCTCTACAGCAGTg                                                                                      >  2:158238/1‑100 (MQ=255)
          gTTGTCGCGCCCGTGACCGTAAAGATCGCGCGGCAGGGGAATTTTCGGATGCGGTAATCCAGTTTGCCCTTCCTGTTGCGCCAGTTTCTCTACAGCAGTg                                                                                      <  1:191857/100‑1 (MQ=255)
            tGTCGCGCCCGTGACCGTAAAGATCGCGCGGCAGGGGAATTTTCGGATGCGGTAATCCAGTTTGCCCTTCCTGTTGCGCCAGTTTCTCTACAGCAGTGAc                                                                                    >  2:2116055/1‑100 (MQ=255)
             gTCGCGCCCGTGACCGTAAAGATCGCGCGGCAGGGGAATTTTCGGATGCGGTAATCCAGTTTGCCCTTCCTGTTGCGCCAGTTTCTCTACAGCAGTGAcc                                                                                   >  2:2216848/1‑100 (MQ=255)
              tCGCGCCCGTGACCGTAAAGATCGCGCGGCAGGGGAATTTTCGGATGCGGTAATCCAGTTTGCCCTTCCTGTTGCGCCAGTTTCTCTACAGCAGTGACCg                                                                                  <  1:124413/100‑1 (MQ=255)
                 cgcCCGTGACCGTAAAGATCGCGCGGCAGGGGAATTTTCGGATGCGGTAATCCAGTTTGCCCTTCCTGTTGCGCCAGTTTCTCTACAGCAGTGACCGGAt                                                                               <  1:376975/100‑1 (MQ=255)
                   cccGTGACCGTAAAGATCGCGCGGCAGGGGAATTTTCGGATGCGGTAATCCAGTTTGCCCTTCCTGTTGCGCCAGTTTCTCTACAGCAGTGACCGGATCg                                                                             >  2:1971037/1‑100 (MQ=255)
                    ccGTGACCGTAAAGATCGCGCGGCAGGGGAATTTTCGGATGCGGTAATCCAGTTTGCCCTTCCTGTTGCGCCAGTTTCTCTACAGCAGTGACCGGATc                                                                              >  2:1734463/1‑98 (MQ=255)
                     cGTGACCGTAAAGATCGCGCGGCAGGGGAATTTTCGGATGCGGTAATCCAGTTTGCCCTTCCTGTTGCGCCAGTTTCTCTACAGCAGTGACCGGATCGGc                                                                           >  2:412219/1‑100 (MQ=255)
                      gTGACCGTAAAGATCGCGCGGCAGGGGAATTTTCGGATGGGGTAATCCAGTTTGCCCTTCCTGTTGCGCCAGTTTCTCTACAGCAGTGACCGGATCg                                                                             <  1:2022499/97‑1 (MQ=255)
                       tGACCGTAAAGATCGCGCGGCAGGGGAATTTTCGGATGCGGTAATCCAGTTTGCCCTTCCTGTTGCGCCAGTTTCTCTACAGCAGTGACCGGATCGGCGa                                                                         >  1:150216/1‑100 (MQ=255)
                         aCCGTAAAGATCGCGCGGCAGGGGAATTTTCGGATGCGGTAATCCAGTTTGCCCTTCCTGTTGCGCCAGTTTCTCTACAGCAGTGACCGGATCGGCGAcc                                                                       <  2:1039033/100‑1 (MQ=255)
                         aCCGTAAAGATCGCGCGGCAGGGGAATTTTCGGATGCGGTAATCCAGTTTGCCCTTCCTGTTGCGCCAGTTTCTCTACAGCAGTGACCGGATCGGCGAcc                                                                       >  2:533021/1‑100 (MQ=255)
                          ccGTAAAGATCGCGCGGCAGGGGAATTTTCGGATGCGGTAATCCAGTTTGCCCTTCCTGTTGCGCCAGTTTCTCTACAGCAGTGACCGGATCGGCGAcc                                                                       >  2:250280/1‑99 (MQ=255)
                          ccGTAAAGATCGCGCGGCAGGGGAATTTTCGGATGCGGTAATCCAGTTTGCCCTTCCTGTTGCGCCAGTTTCTCTACAGCAGTGACCGGATCGGCGACCa                                                                      <  1:1971027/100‑1 (MQ=255)
                          ccGTAAAGATCGCGCGGCAGGGGAATTTTCGGATGCGGTAATCCAGTTTGCCCTTCCTGTTGCGCCAGTTTCTCTACAGCAGTGACCGGATCGGCGACCa                                                                      <  2:1742365/100‑1 (MQ=255)
                          ccGTAAAGATCGCGCGGCAGGGGAATTTTCGGATGCGGTAATCCAGTTTGCCCTTCCTGTTGCGCCAGTTTCTCTACAGCAGTGACCGGATCGGCGACCa                                                                      >  2:1334757/1‑100 (MQ=255)
                          ccGTAAAGATCGCGCGGCAGGGGAATTTTCGGATGCGGTAATCCAGTTTGCCCTTCCTGTTGCGCAAGTTTCTCTACAGCAGTGACCGGATTGGCGAcaa                                                                      >  2:1334683/1‑98 (MQ=255)
                            gTAAAGATCGCGCGGCAGGGGAATTTTCGGATGCGGTAATCCAGTTTGCCCTTCCTGTTGCGCCAGTTTCTCTACAGCAGTGACCGGATCGGCGACCAGt                                                                    <  2:1968264/100‑1 (MQ=255)
                             tAAAGATCGCGCGGCAGGGGAATTTTCGGATGCGGTAATCCAGTTTGCCCTTCCTGTTGCGCCAGTTTCTCTACAGCAGTGACCGGATCGGCGACCAGtt                                                                   >  2:1629531/1‑100 (MQ=255)
                             tAAAGATCGCGCGGCAGGGGAATTTTCGGATGCGGTAATCCAGTTTGCCCTTCCTGTTGCGCCAGTTTCTCTACAGCAGTGACCGGATCGGCGACCAGtt                                                                   <  1:334344/100‑1 (MQ=255)
                             tAAAGATCGCGCGGCAGGGGAATTTTCGGATGCGGTAATCCAGTTTGCCCTTCCTGTTGCGCCAGTTTCTCTACAGCAGTGACCGGATCGGCGACCAGtt                                                                   >  1:1623859/1‑100 (MQ=255)
                               aaGATCGCGCGGCAGGGGAATTTTCGGATGCGGTAATCCAGTTTGCCCTTCCTGTTGCGCCAGTTTCTCTACAGCAGTGACCGGATCGGCGACCAGTTCa                                                                 >  2:1827380/1‑100 (MQ=255)
                                  aTCGCGCGGCAGGGGAATTTTCGGATGCGGTAATCCAGTTTGCCCTTCCTGTTGCGCCAGTTTCTCTACAGCAGTGACCGGATCGGCGACCAGTTCATcc                                                              <  1:378121/100‑1 (MQ=255)
                                    cgcgcgGCAGGGGAATTTTCGGATGCGGTAATCCAGTTTGCCCTTCCTGTTGCGCCAGTTTCTCTACAGCAGTGACCGGATCGGCGACCAGTTCATCCAg                                                            >  1:97870/1‑100 (MQ=255)
                                    cgcgcgGCAGGGGAATTTTCGGATGCGGTAATCCAGTTGGCCCTTCCTATTGCGCCAGTTTCTCTACAGCAGTAACCGCATCGACGACCCGATCATCCa                                                             >  1:1374551/1‑99 (MQ=255)
                                     gcgcgGCAGGGGAATTTTCGGATGCGGTAATCCAGTTTGCCCTTCCTGTTGCGCCAGTTTCTCTACAGCAGTGACCGGATCGGCGACCAGTTCATCCAGt                                                           <  1:425346/100‑1 (MQ=255)
                                     gcgcgGCAGGGGAATTTTCGGATGCGGTAATCCAGTTTGCCCTTCCTGTTGCGCCAGTTTCTCTACAGCAGTGACCGGATCGGCGACCAGTTCATCCAGt                                                           >  1:1480020/1‑100 (MQ=255)
                                      cgcgGCAGGGGAATTTTCGGATGCGGTAATCCAGTTTGCCCTTCCTGTTGCGCCAGTTTCTCTACAGCAGTGACCGGATCGGCGACCAGTTCATCCAGTg                                                          <  2:2073432/100‑1 (MQ=255)
                                      cgcgGCAGGGGAATTTTCGGATGCGGTAATCCAGTTTGCCCTTCCTGTTGCGCCAGTTTCTCTACAGCAGTGACCGGATCGGCGACCAGTTCATCCAGTg                                                          <  2:351746/100‑1 (MQ=255)
                                       gcgGCAGGGGAATTTTCGGATGCGGTAATCCAGTTTGCCCTTCCTGTTGCGCCAGTTTCTCTACAGCAGTGACCGGATCGGCGACCAGTTCATCCAGTgg                                                         <  1:923683/100‑1 (MQ=255)
                                       gcgGCAGGGGAATTTTCGGATGCGGTAATCCAGTTTGCCCTTCCTGTTGCGCCAGTTTCTCTACAGCAGTGACCGGATCGGCGACCAGTTCATCCAGTgg                                                         <  2:83993/100‑1 (MQ=255)
                                        cgGCAGGGGAATTTTCGGATGCGGTAATCCAGTTTGCCCTTCCTGTTGCGCCAGTTTCTCTACAGCAGTGACCGGATCGGCGACCAGTTCATCCAGTGGc                                                        <  2:1095663/100‑1 (MQ=255)
                                         ggCAGGGGAATTTTCGGATGCGGTAATCCAGTTTGCCCTTCCTGTTGCGCCAGTTTCTCTCCAGCAGTGACCGGATCGGCGACCAGTTCATCCCGTGGCa                                                       >  1:42190/1‑100 (MQ=255)
                                            aGGGGAATTTTCGGATGCGGTAATCCAGTTTGCCCTTCCTGTTGCGCCAGTTTCTCTACAGCAGTGACCGGATCGGCGACCAGTTCATCCAGTGGCAAag                                                    >  2:1985854/1‑100 (MQ=255)
                                             ggggAATTTTCGGATGCGGTAATCCAGTTTGCCCTTCCTGTTGCGCCAGTTTCTCTACAGCAGTGACCGGATCGGCGACCAGTTCATCCAGTGGCAAaga                                                   >  2:356934/1‑100 (MQ=255)
                                              gggAATTTTCGGATGCGGTAATCCAGTTTGCCCTTCCTGTTGCGCCAGTTTCTCTACAGCAGTGACCGGATCGGCGACCAGTTCATCCAGTGGCAAagag                                                  >  2:474364/1‑100 (MQ=255)
                                              gggAATTTTCGGATGCGGTAATCCAGTTTGCCCTTCCTGTTGCGCCAGTTTCTCTACAGCAGTGACCGGATCGGCGACCAGTTCATCCAGTGGCAAagag                                                  >  1:1185419/1‑100 (MQ=255)
                                              gggAATTTTCGGATGCGGTAATCCAGTTTGCCCTTCCTGTTGCGCCAGTTTCTCTACAGCAGTGACCGGATCGGCGACCAGTTCATCCAGTGGCAAagag                                                  >  1:949201/1‑100 (MQ=255)
                                              gggAATTTTCGGATGCGGTAATCCAGTTTGCCCTTCCTGTTGCGCCAGTTTCTATACAGCAGTGACCGGATGGGCGACCAGTTCATCAAGTGGCAAagag                                                  >  2:1628697/1‑100 (MQ=255)
                                                gAATTTTCGGATGCGGTAATCCAGTTTGCCCTTCCTGTTGCGCCAGTTTCTCTACAGCAGTGACCGGATCGGCGACCAGTTCATCCAGTGGCAAAGAGgt                                                >  2:1920097/1‑100 (MQ=255)
                                                 aaTTTTCGGATGCGGTAATCCAGTTTGCCCTTCCTGTTGCGCCAGTTTCTCTACAGCAGTGACCGGATCGGCGACCAGTTCATCCAGTGGCCACGAGgt                                                >  2:739931/1‑99 (MQ=255)
                                                 aaTTTTCGGATGCGGTAATCCAGTTTGCCCTTCCTGTTGCGCCAGTTTCTCTACAGCAGTGACCGGATCGGCGACCAGTTCATCCAGTGGCAAAGAGgtg                                               >  1:960388/1‑100 (MQ=255)
                                                 aaTTTTCGGATGCGGTAATCCAGTTTGCCCTTCCTGTTGCGCCAGTTTCTCTACAGCAGTGACCGGATCGGCGACCAGTTCATCCAGTGGCAAAGAGgtg                                               >  1:462181/1‑100 (MQ=255)
                                                     ttCGGATGCGGTAATCCAGTTTGCCCTTCCTGTTGCGCCAGTTTCTCTACAGCAGTGACCGGATCGGCGACCAGTTCATCCAGTGGCAAagggatggtga                                           >  1:73268/1‑91 (MQ=255)
                                                     ttCGGATGCGGTAATCCAGTTTGCCCTTCCTGTTGCGCCAGTTTCTCTACAGCAGTGACCGGATCGGCGACCAGTTCATCCAGTGGCAAAGAGGTGTCgg                                           >  1:845254/1‑100 (MQ=255)
                                                      tCGGATGCGGTAATCCAGTTTGCCCTTCCTGTTGCGCCAGTTTCTCTACAGCAGTGACCGGATCGGCGACCAGTTCATCCAGTGGCAAAGAGGTGTCGGc                                          >  1:1442075/1‑100 (MQ=255)
                                                      tCGGATGCGGTAATCCAGTTTGCCCTTCCTGTTGCGCCAGTTTCTCTACAGCAGTGACCGGATCGGCGACCAGTTCATCCAGTGGCAAAGAGGTGTCGGc                                          <  1:1200644/100‑1 (MQ=255)
                                                         gATGCGGTAATCCAGTTTGCCCTTCCTGTTGCGCCAGTTTCTCTACAGCAGTGCCCGGATCGGCGACCCGTTCATCCAGTGGCAAAGACGTGTCGCCa                                         >  1:2059793/1‑98 (MQ=255)
                                                          attcGGTAATCCAGTTTGCCCTTCCTTTTGCGCCAGTTTCTCTACAGCAGTTACCGGATCGGCCACCAGTTCATCCAGTGGCAAAGAGGTGTCGGCAATa                                      <  2:1800454/97‑1 (MQ=255)
                                                          aTGCGGTAATCCAGTTTGCCCTTCCTGTTGCGCCAGTTTCTCTACAGCAGTGACCGGATCGGCGACCAGTTCATCCAGTGGCAAAGAGGTGTCGGCAATa                                      <  2:2229027/100‑1 (MQ=255)
                                                           tGCGGTAATCCAGTTTGCCCTTCCTGTTGCGCCAGTTTCTCTACAGCAGTGACCGGATCGGCGACCAGTTCATCCAGTGGCAAAGAGGTGTCGGCAATAc                                     <  2:1235049/100‑1 (MQ=255)
                                                             cGGTAATCCAGTTTGCCCTTCCTGTTGCGCCAGTTTCTCTACAGCAGTGACCGGATCGGCGACCAGTTCATCCAGTGGCAAAGAGGTGTCGGCAATACgg                                   >  2:255519/1‑100 (MQ=255)
                                                                tAATCCAGTTTGCCCTTCCTGTTGCGCCAGTTTCTCTACAGCAGTGACCGGATCGGCGACCAGTTCATCCAGTGGCAAAGAGGTGTCGGCAATACGGTTa                                <  1:879529/100‑1 (MQ=255)
                                                                  aTCCGGTTTGCCCTTCCTGTTGCGCCGGGTGCTCGACAGCAGTGACCGGACCGGCGACCAGTTCATCCGGTGGCAAAGAGGTGTCGGCAATACGGTTa                                <  1:1886747/98‑1 (MQ=255)
                                                                  aTCCAGTTTGCCCTTCCTGTTGCGCCAGTTTCTCTACAGCAGTGACCGGATCGGCGACCAGTTCATCCAGTGGCAAAGAGGTGTCGGCAATACGGTTAAc                              <  2:1575266/100‑1 (MQ=255)
                                                                  aTCCAGTTTGCCCTTCCTGTTGCGCCAGTTTCTCTACAGCAGTGACCGGATCGGCGACCAGTTCATCCAGTGGCAAAGAGGTGTCGGCAATACGGTTAAc                              >  2:1516408/1‑100 (MQ=255)
                                                                  aTCCAGTTTGCCCTTCCTGTTGCGCCAGTTTCTCTACAGCAGTGACCGGATCGGCGACCAGTTCATCCAGTGGCAAAGAGGTGTCGGCAATACGGTTAAc                              <  2:1059242/100‑1 (MQ=255)
                                                                   tCCAGTTTGCCCTTCCTGTTGCGCCAGTTTCTCTACAGCAGTGACCGGATCGGCGACCAGTTCATCCAGTGGCAAAGAGGTGTCGGCAATACGGTTaa                               >  1:941067/1‑98 (MQ=255)
                                                                   tCCAGTTTGCCCTTCCTGTTGCGCCAGTTTCTCTACAGCAGTGACCGGATCGGCGACCAGTTCATCCAGTGGCAAAGAGGTGTCGGCAATACGGTTAACa                             >  1:1060328/1‑100 (MQ=255)
                                                                   tCCAGTTTGCCCTTCCTGTTGCGCCAGTTTCTCTACAGCAGTGACCGGATCGGCGACCAGTTCATCCAGTGGCAAAGAGGTGTCGGCAATACGGTTAACa                             <  2:1909636/100‑1 (MQ=255)
                                                                    ccAGTTTGCCCTTCCTGTTGCGCCAGTTTCTCTACAGCAGTGACCGGATCGGCGACCAGTTGATCCAGTGGCAAAGAGGTGTCGGCAATACGGTTAACaa                            >  1:1214794/1‑100 (MQ=255)
                                                                    ccAGTTTGCCCTTCCTGTTGCGCCAGTTTCTCTACAGCAGTGACCGGATCGGCGACCAGTTCATCCAGTGGCAAAGAGGTGTCGGCAATACGGTTAACaa                            <  1:961585/100‑1 (MQ=255)
                                                                     cAGTTTGCCCTTCCTGTTGCGCCAGTTTCTCTACAGCAGTGACCGGATCGGCGACCAGTTCATCCAGTGGCAAAGAGGTGTCGGCAATACGGTTAACaaa                           >  1:2152313/1‑100 (MQ=255)
                                                                         ttGCCCTTCCTGTTGCGCCAGTTTCTCTACAGCAGTGACCGGATCGGCGACCAGTTCATCCAGTGGCAAAGAGGTGTCGGCAATACGGTTAACAAACGAg                       <  1:1985844/100‑1 (MQ=255)
                                                                          tGCCCTTCCTGTTGCGCCAGTTTCTCTACAGCAGTGACCGGATCGGCGACCAGTTCATCCAGTGGCAAAGAGGTGTCGGCAATACGGTTAACAAACGAgg                      >  1:1648826/1‑100 (MQ=255)
                                                                           gCCCTTCCTGTTGCGCCAGTTTCTCTACAGCAGTGACCGGATCGGCGACCAGTTCATCCAGTGGCAAAGAGGTGTCGGCAATACGGTTAACAAACGAGgt                     <  1:2116043/100‑1 (MQ=255)
                                                                            cccTTCCTGTTGCGCCAGTTTCTCTACAGCAGTGACCGGATCGGCGACCAGTTCATCCAGTGGCAAAGAGGTGTCGGCAATACGGTTAACAAACGAGgtg                    <  1:1805110/100‑1 (MQ=255)
                                                                                 ccTGTTGCGCCAGTTTCTCTACAGCAGTGACCGGATCGGCGACCAGTTCATCCAGTGGCAAAGAGGTGTCGGCAATACGGTTAACAAACGAGGTGTTAGc               <  2:2187951/100‑1 (MQ=255)
                                                                                   tGTTGCGCCAGTTTCTCTACAGCAGTGACCGGATCGGCGACCAGTTCATCCAGTGGCAAAGAGGTGTCGGCAATACGGTTAACAAACGAGGTGTTAGCAc             >  1:453591/1‑100 (MQ=255)
                                                                                      tGCGCCAGTTTCTCTACAGCAGTGACCGGATCGGCGACCAGTTCATCCAGTGGCAAAGAGGTGTCGGCAATACGGTTAACAAACGAGGTGTTAGCACCGt          <  1:1759583/100‑1 (MQ=255)
                                                                                       gcgcCAGTTTTTCTACAGCAGTGACCGGATCGGCGACCAGTTCATCCAGTGGCAAAGAGGTGTCGGCAATACGGTTAACAAACGAGGTGTTAGCACCGtt         >  1:1558624/1‑100 (MQ=255)
                                                                                        cgcCAGTTTCTCTACAGCAGTGACCGGATAGGCGACCAGTTCATCCAGTGGCAAAGAAGTGTCGGCAATACGGTTAACAAACGAGGTGTTAGCACCGttt        >  1:1567759/1‑100 (MQ=255)
                                                                                         gcCAGTTTCTCTACAGCAGTGACCGGATCGGCGACCAGTTCATCCAGTGGCAAAGAGGTGTCGGCAATACGGTTAACAAACGAGGTGTTAGCACCGtttt       >  2:1999422/1‑100 (MQ=255)
                                                                                         gcCAGTTTCTCTACAGCAGTGACCGGATCGGCGACCAGTTCATCCAGTGGCAAAGAGGTGTCGGCAATACGGTTAACAAACGAGGTGTTAGCACCGtttt       >  2:355531/1‑100 (MQ=255)
                                                                                           cAGTTTCTCTACAGCAGTGACCGGATCGGCGACCAGTTCATCCAGTGGCAAAGAGGTGTCGGCAATACGGTTAACAAACGAGGTGTTAGCACCGTTTTcc     <  1:2137180/100‑1 (MQ=255)
                                                                                             gTTTCTCTACAGCAGTGACCGGATCGGCGACCAGTTCATCCAGTGGCAAAGAGGTGTCGGCAATACGGTTAACAAACGAGGTGTTAGCACCGTTTTcctg   <  2:1508100/100‑3 (MQ=255)
                                                                                             gTTTCTCTACAGCAGTGACCGGATCGGCGACCAGTTCATCCAGTGGCAAAGAGGTGTCGGCAATACGGTTAACAAACGAGGTGTTAGCACCGTTTTCcag   <  1:360013/100‑1 (MQ=255)
                                                                                             gTTTCTCTACAGCAGTGACCGGATCGGCGACCAGTTCATCCAGTGGCAAAGAGGTGTCGGCAATACGGTTAACAAACGAGGTGTTAGCACCGTTTTCcag   <  2:2187424/100‑1 (MQ=255)
                                                                                              tttctCTACAGCAGTGACCGGATCGGCGACCAGTTCATCCAGTGGCAAAGAGGTGTCGGCAATACGGTTAACAAACGAGGTGTTAGCACCGTTTTCcagc  <  1:356933/100‑1 (MQ=255)
                                                                                              tttctCTACAGCAGTGACCGGATCGGCGACCAGTTCATCCAGTGGCAAAGAGGTGTCGGCAATACGGTTAACAAACGAGGTGTTAGCACCGTTTTCcagc  >  1:2166821/1‑100 (MQ=255)
                                                                                                 |                                                                                                
GCCCTGCCGAGTTGTCGCGCCCGTGACCGTAAAGATCGCGCGGCAGGGGAATTTTCGGATGCGGTAATCCAGTTTGCCCTTCCTGTTGCGCCAGTTTTTCTACAGCAGTGACCGGATCGGCGACCAGTTCATCCAGTGGCAAAGAGGTGTCGGCAATACGGTTAACAAACGAGGTGTTAGCACCGTTTTCCAGC  >  NC_000913/1077019‑1077212

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: