| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 4,296,381:1 | +GC | 100% | intergenic (+587/+55) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,380 | 1 | . | C | 96.7% | 192.0 / ‑0.2 | 60 | intergenic (+586/+56) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Reads supporting (aligned to +/- strand): ref base . (0/2); new base C (27/31); total (27/33) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.97e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| * | NC_000913 | 4,296,380 | 2 | . | G | 96.7% | 195.4 / ‑0.1 | 60 | intergenic (+586/+56) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Reads supporting (aligned to +/- strand): ref base . (0/2); new base G (27/31); total (27/33) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.97e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTT‑‑A‑‑C‑CGC‑ATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACC > NC_000913/4296344‑4296470 || gATTTAGCGTGATTTTTTAGGTCGTATAAGGCGTTT‑‑ACGC‑CGC‑ATCCTACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAAcc < 1:1400207/100‑1 (MQ=11)gATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTT‑‑ACGC‑CGC‑ATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAAcc < 2:1803720/100‑1 (MQ=255) tttAGCGTGATTTTGTAGGTCGGATAAGGCGTTT‑‑ACGC‑CGC‑ATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGt > 2:916456/1‑100 (MQ=255) tttAGCGTGATTTTGTAGGTCGGATAAGGCGTTT‑‑ACGC‑CGC‑ATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGt > 2:2002105/1‑100 (MQ=255) tttAGCGTGATTTTGTAGGTCGGATAAGGCGTTT‑‑ACGC‑CGC‑ATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGt > 2:1664206/1‑100 (MQ=255) tAGGGTGATTTTGTAGGTCGGATAAGGCGTTT‑‑ACGC‑CGC‑ATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTg < 1:1208439/100‑1 (MQ=11) tAGCGTGATTTTGTAGGTCGGATAAGGCGTTT‑‑ACGC‑CGC‑ATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTg > 2:1192825/1‑100 (MQ=255) tAGCGTGATTTTGTAGGTCGGATAAGGCGTTT‑‑ACGC‑CGC‑ATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTg > 1:2614840/1‑100 (MQ=255) tAGCGTGATTTTGTAGGTCGGATAAGGCGTTT‑‑ACGC‑CGC‑ATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTg < 1:2351221/100‑1 (MQ=255) aGCGTGATTTTGTAGGTCGGATAAGGCGTTT‑‑ACGC‑CGC‑ATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTgg < 2:71942/100‑1 (MQ=255) aGCGTGATTTTGTAGGTCGGATAAGGCGTTT‑‑ACGC‑CGC‑ATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTg < 1:1209215/99‑1 (MQ=255) gCGTGATTTTGTAGGTCGGATAAGGCGTTT‑‑ACGC‑CGT‑ATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGt > 2:2158665/1‑100 (MQ=14) cGTGATTTTGTCGGTCGGATACGACGTGTCGG‑‑C‑CGC‑ATGCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGt < 1:1936626/99‑1 (MQ=14) cGTGATTTTGTAGGTCGGATAAGGCGTTT‑‑ACGC‑CGC‑ATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTCACCGTTGGtt > 1:2051560/1‑100 (MQ=11) cGTGATTTTGTAGGTCGGATAAGGCGTTT‑‑ACGC‑CGC‑ATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTg < 1:72874/97‑1 (MQ=255) cGTGATTTTGTAGGTCGGATAAGGCGTTT‑‑ACGC‑CGC‑ATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGtt < 1:1509001/100‑1 (MQ=255) gTGATTTTGTAGGTCGGATAAGGCGTTT‑‑ACGC‑CGC‑ATCCGACATCAATGCCTGATGCGTCGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTa < 1:1674047/100‑1 (MQ=14) gTGATTTTGTAGGTCGGATAAGGCGTTT‑‑ACGC‑CGC‑ATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTa > 1:1550533/1‑100 (MQ=255) gTGATTTTGTAGGTCGGATAAGGCGTTT‑‑ACGC‑CGC‑ATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTa > 1:626895/1‑100 (MQ=255) tGATTTTGTAGGTCGGATAAGGCGTTT‑‑ACGC‑CGC‑ATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTaa > 2:246992/1‑100 (MQ=255) tGATTTTGTAGGTCGGATAAGGCGTTT‑‑ACGC‑CGC‑ATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTaa > 2:1771538/1‑100 (MQ=255) tGATTTTGTAGGTCGGATAAGGCGTTT‑‑ACGC‑CGC‑ATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTaa > 1:2843807/1‑100 (MQ=255) gATTTTGTAGGTCGGATAAGGCGTTT‑‑ACGC‑CGC‑ATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAAt < 1:356788/100‑1 (MQ=255) aTTTTGTAGGTCGGATAAGGCGTTT‑‑ACGC‑CGC‑ATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAAtt > 2:1053484/1‑100 (MQ=255) aTTTTGTAGGTCGGATAAGGCGTTT‑‑ACGC‑CGC‑ATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAAtt < 1:1721920/100‑1 (MQ=255) aTTTTGTAGGTCGGATAAGGCGTTT‑‑ACGC‑CGC‑ATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAAtt < 1:453940/100‑1 (MQ=255) ttttGTAGGTCGGATGAGGCGTTT‑‑A‑‑CGCCCAACCCGACATCAGTGCCTGATGCGACGCTGGCCGCGTCTTATCAGGCCTATCTTAACCAACGGTTaagan < 1:3035210/100‑4 (MQ=2) tttGTAGGTCGGATAAGGCGTTT‑‑ACGC‑CGC‑ATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAAtttt < 2:2843824/100‑1 (MQ=255) ttGTAGGTCGGATAAGGCGTTT‑‑ACGC‑CGC‑ATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAAttttt < 1:1084609/100‑1 (MQ=255) ttGTAGGTCGGATAAGGCGTTT‑‑ACGC‑CGC‑ATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAAttttt > 2:1398880/1‑100 (MQ=255) tGTAGGTCGGATAAGGCGTTT‑‑ACGC‑CGC‑ATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTc < 2:2921319/100‑1 (MQ=255) tGTAGGTCGGATAAGGCGTTT‑‑ACGC‑CGC‑ATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTc < 2:2421041/100‑1 (MQ=255) gTAGGTCGGATAAGGCGTTT‑‑ACGC‑CGC‑ATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCa < 1:2637671/100‑1 (MQ=255) tAGGTCGGATAAGGCGTTT‑‑ACGC‑CGC‑ATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCaa < 1:730833/100‑1 (MQ=255) tAGGTCGGATAAGGCGTTT‑‑ACGC‑CGC‑ATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCaa < 1:1252473/100‑1 (MQ=255) tAGGTCGGATAAGGCGTTT‑‑ACGC‑CGC‑ATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCaa < 2:2719475/100‑1 (MQ=255) tAGGTCGGATAAGGCGTTT‑‑ACGC‑CGC‑ATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCaa > 2:620863/1‑100 (MQ=255) aGGTCGGATAAGGCGTTT‑‑ACGC‑CGC‑ATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCaaa < 2:1990922/100‑1 (MQ=255) ggTCGGATAAGGCGTTT‑‑ACGC‑CGC‑ATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAAc > 2:1215427/1‑100 (MQ=255) ggTCGGATAAGGCGTTT‑‑ACGC‑CGC‑ATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAAc > 2:286103/1‑100 (MQ=255) ggTCGGATAAGGCGTTT‑‑ACGC‑CGC‑ATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAAc > 2:1763282/1‑100 (MQ=255) ggTCGGATAAGGCGTTT‑‑ACGC‑CGC‑ATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAAc < 1:1771528/100‑1 (MQ=255) ggTCGGATAAGGCGTTT‑‑ACGC‑CGC‑ATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAAc < 1:2934546/100‑1 (MQ=255) ggTCGGATAAGGCGTTT‑‑ACGC‑CGC‑ATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAAc < 1:246990/100‑1 (MQ=255) ggTCGGATAAGGCGTTT‑‑ACGC‑CGC‑ATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTAGTTAATTTTTCAAAc > 2:3012395/1‑100 (MQ=17) gTCGGATAAGGCGTTT‑‑ACGC‑CGC‑ATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAAct > 1:968340/1‑100 (MQ=255) gTCGGATAAGGCGTTT‑‑ACGC‑CGC‑ATCAGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAAct > 2:1865825/1‑100 (MQ=17) cGGATAAGGCGTTT‑‑ACGC‑CGC‑ATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAActct < 2:1587751/100‑1 (MQ=255) ggATAAGGCGTTT‑‑ACGC‑CGC‑ATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCtt > 2:2336854/1‑100 (MQ=255) ggATAAGGCGTTT‑‑ACGC‑CGC‑ATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCtt < 2:1413785/100‑1 (MQ=255) ggATAAGGCGTTT‑‑ACGC‑CGC‑ATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCtt < 1:2422111/100‑1 (MQ=255) ggATAAGGCGTTT‑‑ACGC‑CGC‑ATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCtt > 1:1058038/1‑100 (MQ=255) gagaaGGCGTTT‑‑ACGC‑CGC‑ATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTc < 1:1967934/97‑1 (MQ=18) gATAAGGCGTTT‑‑ACGC‑CGC‑ATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTc > 2:754726/1‑100 (MQ=255) aTAAGGCGTTT‑‑ACGC‑CGC‑ATTCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTc < 1:1039049/99‑1 (MQ=18) aTAAGGCGTTT‑‑ACGC‑CGC‑ATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTca < 2:714000/100‑1 (MQ=255) tAAGGCGTTT‑‑ACGC‑CGC‑ATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTcac > 1:2108347/1‑100 (MQ=255) aGGCGTTT‑‑ACGC‑CGC‑ATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCacac > 2:1847384/1‑100 (MQ=255) ggCGTTT‑‑ACGC‑CGC‑ATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACAcc > 2:62852/1‑100 (MQ=255) ggCGTTT‑‑ACGC‑CGC‑ATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACAcc < 1:1193448/100‑1 (MQ=255) || GATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTT‑‑A‑‑C‑CGC‑ATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACC > NC_000913/4296344‑4296470 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |