| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3546221 | NA (NA) | 11 (0.100) | 7/166 | NT | NA | intergenic (+22/‑338) | nfuA/gntT | Fe/S biogenesis protein, putative scaffold/chaperone protein/gluconate transporter, high‑affinity GNT I system |
| ? | NC_000913 | = 3546253 | NA (NA) | noncoding (32/36 nt) | REP253 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP253 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
TGCTGAACGAATTCCCGGAGCTGAAAGGTGTGCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTgcccga‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3546123‑3546221‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCCGAAATGACGCTTTAGCGTCGCATCGGGCAATCTACAAAAGAGGGGATAACTTAGTAGTAGGAGTGTTCGCCGCGCTGGTGTTCGGTGAGATCGCGCAC < NC_000913/3546253‑3546152 TGCTGAACGAATTCCCGGAGCTGAAAGGTGTGCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTG > 1:8860/1‑100 GCTGAACGAATTCCCGGAGCTGAAAGGTGTGCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGC < 1:1471748/100‑1 CTGAACGAATTCCCGGAGCTGAAAGGTGTGCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCC < 2:448049/100‑1 TGAACGAATTCCCGGAGCTGAAAGGTGTGCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCC > 1:2758693/1‑100 TGAACGAATTCCCGGAGCTGAAAGGTGTGCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCC < 2:2180822/100‑1 AACGAATTCCCGGAGCTGAAAGGTGTGCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGA > 2:2179461/1‑100 TGCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGAAATGACGCTTTAGCGTCGCATCGGG < 2:2126620/100‑1 TGCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGAAATGACGCTTTAGCGTCGCATCGGG < 1:570318/100‑1 GCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGAAATGACGCTTTAGCGTCGCATCGGGC < 2:1810378/100‑1 GCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGAAATGACGCTTTAGCGTCGCATCGGGC < 2:255518/100‑1 CGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGAAATGACGCTTTAGCGTCGCATCGGGCA < 2:39036/100‑1 GCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGAAATGACGCTTTAGCGTCGCATCGGGCAA < 2:1583485/100‑1 CGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGAAATGACGCTTTAGCGTCGCATCGGGCAAT < 2:1050228/100‑1 CGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGAAATGACGCTTTAGCGTCGCATCGGGCAAT < 2:1338011/100‑1 GATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGAAATGACGCTTTAGCGTCGCATCGGGCAATC < 2:331940/100‑1 ATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGAAATGACGCTTTAGCGTCGCATCGGGCAATCT < 2:875077/100‑1 TAAGTTATCCCCTCTTTTGTAGATTGCCCGAAATGACGCTTTAGCGTCGCATCGGGCTATCTACAAAATAGGGGATAACTTAGTAGTAGGAGTGTTCGac < 2:2067084/100‑3 GCCCGAAATGACGCTTTAGCGTCGCATCGGGCAATCTACAAAAGAGGGGATAACTTAGTAGTAGGAGTGTTCGCCGCGCTGGTGTTCGGTGAGCTCGCG > 1:791499/1‑99 GCCCGAAATGACGCTTTAGCGTCGCATCGGGCAATCTACAAAAGAGGGGATAACTTAGTAGTAGGAGTGTTCGCCGCGCTGGTGTTCGGTGAGATCGCGC > 2:343848/1‑100 GCCCGAAATGACGCTTTAGCGTCGCATCGGGCAATCTACAAAAGAGGGGATAACTTAGTAGTAGGAGTGTTCGCCGCGCTGGTGTTCGGTGAGATCGCGC > 1:1463621/1‑100 GCCCGAAATGACGCTTTAGCGTCGCATCGGGCAATCTACAAAAGAGGGGATAACTTAGTAGTAGGAGTGTTCGCCGCGCTGGTGTTCGGTGAGATCGCGC < 1:2337737/100‑1 CCCGAAATGACGCTTTAGCGTCGCATCGGGCAATCTACAAAAGAGGGGATAACTTAGTAGTAGGAGTGTTCGCCGCGCTGGTGTTCGGTGAGATCGCGCA < 1:919748/100‑1 CCCGAAATGACGCTTTAGCGTCGCATCGGGCAATCTACAAAAGAGGGGATAACTTAGTAGTAGGAGTGTTCGCCGCGCTGGTGTTCGGTGAGATCGCGCA > 1:742067/1‑100 CCCGAAATGACGCTTTAGCGTCGCATCGGGCAATCTACAAAAGAGGGGATAACTTAGTAGTAGGAGTGTTCGCCGCGCTGGTGTTCGGTGAGATCGCGCA > 1:2681170/1‑100 CCCGAAATGACGCTTTAGCGTCGCATCGGGCAATCTACAAAAGAGGGGATAACTTAGTAGTAGGAGTGTTCGCCGCGCTGGTGTTCGGTGAGATCGCGCA > 2:703200/1‑100 CCCGAAATGACGCTTTAGCGTCGCATCGGGCAATCTACAAAAGAGGGGATAACTTAGTAGTAGGAGTGTTCGCCGCGCTGGTGTTCGGTGAGATCGCGCA > 1:1422993/1‑100 CCCGAAATGACGCTTTAGCGTCGCATCGGGCAATCTACAAAAGAGGGGATAACTTAGTAGTAGGAGTGTTCGCCGCGCTGGTGTTCGGTGAGATCGCGCA > 2:946729/1‑100 CCCGAAATGACGCTTTAGCGTCGCATCGGGCAATCTACAAAAGAGGGGATAACTTAGTAGTAGGAGTGTTCGCCGCGCTGGTGTCTGGTGAGATCGCGCA > 1:218863/1‑100 CCGAAATGACGCTTTAGCGTCGCATCGGGCAATCTACAAAAGAGTGGATAACTTAGTAGTAGGAGTGTTCGCCGCGCTGGTGTTCGGTGAGATCGCGCAC < 1:2802549/100‑1 CGAAATGACGCTTTAGCGTCGCATCGGGCAATCTACAAAAGAGGGGATAACTTAGTAGTAGGAGTGTTCGCCGCGCTGGTGTTCGGTGAGATCGCGCA < 1:927844/98‑1 TGCTGAACGAATTCCCGGAGCTGAAAGGTGTGCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTgcccga‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3546123‑3546221‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCCGAAATGACGCTTTAGCGTCGCATCGGGCAATCTACAAAAGAGGGGATAACTTAGTAGTAGGAGTGTTCGCCGCGCTGGTGTTCGGTGAGATCGCGCAC < NC_000913/3546253‑3546152 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |