New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 277706	NA (NA)	4 (0.040)	4/164	NT	NA	noncoding (32/67 nt)	REP22 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP22 (repetitive extragenic palindromic) element; contains 2 REP sequences
	?	NC_000913	= 277737	NA (NA)					noncoding (63/67 nt)	REP22 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP22 (repetitive extragenic palindromic) element; contains 2 REP sequences

GCCTGCGGATATCGCCGCGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTgccggat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/277611‑277706 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCGGATAAGGCGCTTGTGCCGCCATCCGGCAATGCCTGATGCGCTGCGCTTATCAGGCCTACAATGAACGATGTAGACCCGATAAACCCTCAGCTTCGCGCTTTT  <  NC_000913/277737‑277632                                                                                                                                                                                                            GCCTGCGGATATCGCCGCGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCG                                                                                                        <  2:2231581/100‑1  CCTGCGGATATCGCCGCGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGG                                                                                                       <  2:1122743/100‑1  CCTGCGGATATCGCCGCGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGG                                                                                                       <  1:2603065/100‑1   CTGCGGATATCGCCGCGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGA                                                                                                      <  1:34949/100‑1   CTGCGGATATCGCCGCGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGA                                                                                                      >  1:713255/1‑100                            GCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATAAGGCGCTTGTGCCGCCATCCGGC                                                                             <  2:1572948/100‑1                              GAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATAAGGCGCTTGTGCCGCCATCCGGCAA                                                                           <  1:2376634/100‑1                                AGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATAAGGCGCTTGTGCCGCCATCCGGCAATG                                                                         <  1:1171632/100‑1                                  CTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATAAGGCGCTTGTGCCGCCATCCGGCAATGCC                                                                       <  1:1083605/100‑1                                                                                          tttggattCCGGATAAGGCGCGTGTGCCGCCAGCCGGCAATGCCTGATGCGCTGCTCTTATCAGGCCTACAATGAACGATGTAGACCCTATAAACCCTCA               <  1:1424373/92‑1                                                                                                 GCCGGATAAGGCGCTTGTGCCGCCATCCGGCAATGCCTGATGCGCTGCGCTTATCAGGCCTACAATGAACGATGTAGACCCGATAAACCCTCAGCTTCGC        >  2:941/1‑100                                                                                                  CCGGATAAGGCGCTTGTGCCGCCATCCGGCAATGCCTGATGCGCTGCGCTTATCAGGCCTACAATGAACGATGTAGACCCGATAAACCCTCAGCTTCGCG       >  2:2743794/1‑100                                                                                                  CCGGATAAGGCGCTTGTGCCGCCATCCGGCAATGCCTGATGCGCTGCGCTTATCAGGCCTACAATGAACGATGTAGACCCGATAAACCCTCAGCTTCG         <  1:1797645/98‑1                                                                                                   CGGATAAGGCGCTTGTGCCGCCATCCGGCAATGCCTGATGCGCTGCGCTTATCAGGCCTACAATGAACGATGTAGACCCGATAAACCCTCAGCTTCGCGC      <  1:476933/100‑1                                                                                                   CGGATAAGGCGCTTGTGCCGCCATCCGGCAATGCCTGATGCGCTGCGCTTATCAGGCCTACAATGAACGATGTAGACCCGATAAACCCTCAGCTTCGCGC      <  2:1962813/100‑1                                                                                                     GATAAGGCGCTTGTGCCGCCATCCGGCAATGCCTGATGCGCTGCGCTTATCAGGCCTACAATGAACGATGTAGACCCGATAAACCCTCAGCTTCGCGCTT    >  2:2331326/1‑100                                                                                                       TAAGGCGCTTGTGCCGCCATCCGGCAATGCCTGATGCGCTGCGCTTATCAGGCCTACAATGAACGATGTAGACCCGATAAACCCTCAGCTTCGCGCTTTT  >  2:2751025/1‑100                                                                                                                                                                                                            GCCTGCGGATATCGCCGCGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTgccggat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/277611‑277706 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCGGATAAGGCGCTTGTGCCGCCATCCGGCAATGCCTGATGCGCTGCGCTTATCAGGCCTACAATGAACGATGTAGACCCGATAAACCCTCAGCTTCGCGCTTTT  <  NC_000913/277737‑277632

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.