New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 437119	NA (NA)	10 (0.100)	8/162	NT	NA	intergenic (+12/+42)	pgpA/yajO	phosphatidylglycerophosphatase A/2‑carboxybenzaldehyde reductase
	?	NC_000913	= 437152	NA (NA)					noncoding (33/37 nt)	REP38 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP38 (repetitive extragenic palindromic) element; contains 1 REP sequences

ATGATCGACGATATTGTCGCCGGGGTGATTTCCGCAGGCATCCTGTATTTTATCGGTCATCACTGGCCGCTGGGTATTCTGTCGTAGTTGTGCACCGATgcctgatg‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/437021‑437119 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCTGATGAGACGTGACAAGCGTCACATCAGGCATCGGTGCACAACTACGACAGAATACCCAGCGGCCAGTGATGACCGATAAAATACAGGATGCCTGCGGAAAT  <  NC_000913/437152‑437048                                                                                                                                                                                                              ATGATCGACGATATTGTCGCCGGGGTGATTTCCGCAGGCATCCTGTATTTTATCGGTCATCACTGGCCGCTGGGTATTCTGTCGTAGTTGTGCACCGATG                                                                                                          >  2:924229/1‑100   GATCGACGATATTGTCGCCGGGGTGATTTCCGCAGGCATCCTGTATTTTATCGGTCATCACTGGCCGCTGGGTATTCTGTCGTAGTTGTGCACCGATGCC                                                                                                        <  2:1887510/100‑1   GATCGACGATATTGTCGCCGGGGTGATTTCCGCAGGCATCCTGTATTTTATCGGTCATCACTGGCCGCTGGGTATTCTGTCGTAGTTGTGCACCGATGCC                                                                                                        <  1:1617461/100‑1     TCGACGATATTGTCGCCGGGGTGATTTCCGCAGGCATCCTGTATTTTATCGGTCATCACTGGCCGCTGGGTATTCTGTCGTAGTTGTGCACCGATGCCTG                                                                                                      <  1:2985328/100‑1        ACGATATTGTCGCCGGGGTGATTTCCGCAGGCATCCTGTATTTTATCGGTCATCACTGGCCGCTGGGTATTCTGTCGTAGTTGTGCACCGATGCCTGATG                                                                                                   >  2:995434/1‑100                              TTCCGCAGGCATCCTGTATTTTATCGGTCATCACTGGCCGCTGGGTGTTCTGTCGTAGTTGTGCACCGATGCCTGATGAGACGTGACAAGCGTCACATCA                                                                             <  1:1214541/100‑1                               TCCGCAGGCATCCTGTATTTTATCGGTCATCACTGGCCGCTGGGTATTCTGTCGTAGTTGTGCACCGATGCCTGATGAGACGTGACAAGCGTCACATCAG                                                                            <  2:1718154/100‑1                                CCGCAGGCATCCTGTATTTTATCGGTCATCACTGGCCGCTGGGTATTCTGTCGTAGTTGTGCACCGATGCCTGATGAGACGTGACAAGCGTCACATCAGG                                                                           <  2:2048210/100‑1                                CCGCAGGCATCCTGTATTTTATCGGTCATCACTGGCCGCTGGGTATTCTGTCGTAGTTGTGCACCGATGCCTGATGAGACGTGACAAGCGTCACATCAGG                                                                           <  2:2907840/100‑1                                 CGCAGGCATCCTGTATTTTATCGGTCATCACTGGCCGCTGGGTATTCTGTCGTAGTTGTGCACCGATGCCTGATGAGACGTGACAAGCGTCACATCAGGC                                                                          <  2:1890450/100‑1                                 CGCAGGCATCCTGTATTTTATCGGTCATCACTGGCCGCTGGGTATTCTGTCGTAGTTGTGCACCGATGCCTGATGAGACGTGACAAGCGTCACATCAGGC                                                                          <  2:631912/100‑1                                   CAGGCATCCTGTATTTTATCGGTCATCACTGGCCGCTGGGTATTCTGTCGTAGTTGTGCACCGATGCCTGATGAGACGTGACAAGCGTCACATCAGGCAT                                                                        <  2:1683587/100‑1                                    AGGCATCCTGTATTTTATCGGTCATCACTGGCCGCTGGGTATTCTGTCGTAGTTGTGCACCGATGCCTGATGAGACGTGACAAGCGTCACATCAGGCATC                                                                       <  2:2131324/100‑1                                      GCATCCTGTATTTTATCGGTCATCACTGGCCGCTGGGTATTCTGTCGTAGTTGTGCACCGATGCCTGATGAGACGTGACAAGCGTCACATCAGGCATCGG                                                                     <  1:489935/100‑1                                       CATCCTGTATTTTATCGGTCATCACTGGCCGCTGGGTATTCTGTCGTAGTTGTGCACCGATGCCTGATGAGACGTGACAAGCGTCACATCAGGCATCGGT                                                                    <  2:736404/100‑1                                                                                                    GCCTGATGAGACGTGACAAGCGTCACATCAGGCATCGGTGCACAACTACGACAGAATACCCAGCGGCCAGTGATGACCGATAAAATACAGGATGCCTGCG       <  1:1541768/100‑1                                                                                                      CTGATGAGACGTGACAAGCGTCACATCAGGCATCGGTGCACAACTACGACAGAATACCCAGCGGCCAGTGATGACCGATAAAATACAGGATGCCTGCGGA     >  1:773181/1‑100                                                                                                      CTGATGAGACGTGACAAGCGTCACATCAGGCATCGGTGCACAACTACGACAGAATACCCAGCGGCCAGTGATGACCGATAAAATACAGGATGCCTGCGGA     >  2:689224/1‑100                                                                                                       TGATGAGACGTGACAAGCGTCACATCAGGCATCGGTGCACAACTACGACAGAATACCCAGCGGCCAGTGATGACCGATAAAATACAGGATGCCTGCGGAA    >  1:1112496/1‑100                                                                                                        GATGAGACGTGACAAGCGTCACATCAGGCATCGGTGCACAACTACGACAGAATACCCAGCGGCCAGTGATGACCGATAAAATACAGGATGCCTGCGGAA    >  2:894420/1‑99                                                                                                         ATGAGACTTGACAAGCGTCACATCAGGCATCGGTGCACAACTACGACAGAATACCCAGCGGCCAGTGATGACCGATAAAATACAGGATGCCTGCGGAAAT  <  1:2582461/100‑1                                                                                                                                                                                                              ATGATCGACGATATTGTCGCCGGGGTGATTTCCGCAGGCATCCTGTATTTTATCGGTCATCACTGGCCGCTGGGTATTCTGTCGTAGTTGTGCACCGATgcctgatg‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/437021‑437119 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCTGATGAGACGTGACAAGCGTCACATCAGGCATCGGTGCACAACTACGACAGAATACCCAGCGGCCAGTGATGACCGATAAAATACAGGATGCCTGCGGAAAT  <  NC_000913/437152‑437048

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.