| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1180354 = | NA (NA) | 7 (0.070) | 7/164 | NT | NA | noncoding (1/96 nt) | RIP104 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP104 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | NC_000913 | 1180379 = | NA (NA) | noncoding (26/96 nt) | RIP104 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP104 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
GTATTATTCCGGATGGGGCGCGAACGCCTTATCCGGCCCACAAAACCCGCAAATTCAATTAATTGCGTCCCCTTGCAGGCCTGATAAGCGTAGTGCATCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/1180456‑1180354‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcaggcCTGCAAGGGGACGCAATTAATTGAATTTGCGGGTTTTGTGGGCCGGATAAGGCGTTCGCGCCCCATCCGGAATAATACACGCGCACTTTTCCGGCCTC > NC_000913/1180379‑1180476 GTATTATTCCGGATGGGGCGCGAACGCCTTATCCGGCCCACAAAACCCGCAAATTCAATTAATTGCGTCCCCTTGCAGGCCTGATAAGCGTAGTGCATCA < 2:2164439/100‑1 TATTATTCCGGATGGGGCGCGAACGCCTTATCCGGCCCACAAAACCCGCAAATTCAATTAATTGCGTCCCCTTGCAGGCCTGATAAGCGTAGTGCATCAG < 2:296710/100‑1 CTTGCAGGCCTGATAAGCGTAGTGCATCAGGCCTGCACGGGGACGCAATTAATTGAATTTGCGGGTTTTGTGGGCCGGATAAGGCGTTCGCGCCCCATCC > 1:1315479/1‑100 TGCAGGCCTGATAAGCGTAGTGCATCAGGCCTGCAAGGGGACGCAATTAATTGAATTTGCGGGTTTTGTGGGCCGGATAAGGCGTTCGCGCCCCATCCGG > 2:755560/1‑100 GCAGGCCTGATAAGCGTAGTGCATCAGGCCTGCAAGGGGACGCAATTAATTGAATTTGCGGGTTTTGTGGGCCGGATAAGGCGTTCGCGCCCCATCCGGA > 2:2506389/1‑100 AGGCCTGATAAGCGTAGTGCATCAGGCCTGCAAGGGGACGCAATTAATTGAATTTGCGGGTTTTGTGGGCCGGATAAGGCGTTCGCGCCCCATCCGGAAT > 2:988910/1‑100 GGCCTGATAAGCGTAGTGCATCAGGCCTGCAAGGGGACGCAATTAATTGAATTTGCGGGTTTTGTGGGCCGGATAAGGCGTTCGCGCCCCATCCGGAATA > 1:82273/1‑100 CCTGATAAGCGTAGTGCATCAGGCCTGCAAGGGGACGCAATTAATTGAATTTGCGGGTTTTGTGGGCCGGATAAGGCGTTCGCGCCCCATCCGGAATAAT > 1:92515/1‑100 TGATAAGCGTAGTGCATCAGGCCTGCAAGGGGACGCAATTAATTGACTTTGCGGGTGTTGAGGGCCGGATTAGGCGTTCGCGGCCCCTGCGGAA > 1:3016875/1‑94 ATCAGGCCTGCAAGGGGACGCAATTAATTGAATTTGCGGGTTTTGTGGGCCGGATAAGGCGTTCGCGCCCCATCCGGAATAATACACGCGCACTTTTCCG < 2:1417312/100‑1 ATCAGGCCTGCAAGGGGACGCAATTAATTGAATTTGCGGGTTTTGTGGGCCGGATAAGGCGTTCGCGCCCCATCCGGAATAATACACGCGCACTTTTCCG < 2:324543/100‑1 tctGGCCTGCAAGGGGACGCAATTAATTGAATTTGCGGGTTTTGTGGGCCGGATAAGGCGTTCGCGCCCCATCCGGAATAATACACGCGCACTTTTCCGG < 2:1302614/97‑1 TCAGGCCTGCAAGGGGACGCAATTAATTGAATTTGCGGGTTTTGTGGGCCGGATAAGGCGTTCGCGCCCCATCCGGAATAATACACGCGCACTTTTCCGG < 1:1951540/100‑1 CAGGCCTGCAAGGGGACGCAATTAATTGAATTTGCGGGTTTTGTGGGCCGGATAAGGCGTTCGCGCCCCATCCGGAATAATACACGCGCACTTTTCCGGC < 2:806317/100‑1 CAGGCCTGCAAGGGGACGCAATTAATTGAATTTGCGGGTGTTGTGGGCCGGATAAGGCGTTCGCGCCCCATCCGGAATAATACACGCGCACTTTTCCGGC > 1:2618878/1‑100 AGGCCTGCAAGGGGACGCAATTAATTGAATTTGCGGGTTTTGTGGGCCGGATAAGGCGTTCGCGCCCCATCCGGAATAATACACGCGCACTTTTCCGGCC > 2:1991967/1‑100 AGGCCTGCAAGGGGACGCAATTAATTGAATTTGCGGGTTTTGTGGGCCGGATAAGGCGTTCGCGCCCCATCCGGAATAATACACGCGCACTTTTCCGGCC < 1:105447/100‑1 GGCCTGCAAGGGGACGCAATTAATTGAATTTGCGGGTTTTGTGGGCCGGATAAGGCGTTCGCGCCCCATCCGGAATAATACACGCGCACTTTTCCGGaga > 1:1302608/1‑97 GCCTGCAAGGGGACGCAATTAATTGAATTTGCGGGTTTTGTGGGCCGGATAAGGCGTTCGCGCCCCATCCGGAATAATACACGCGCACTTTTCCGGCCTC < 2:777559/100‑1 GTATTATTCCGGATGGGGCGCGAACGCCTTATCCGGCCCACAAAACCCGCAAATTCAATTAATTGCGTCCCCTTGCAGGCCTGATAAGCGTAGTGCATCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/1180456‑1180354‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcaggcCTGCAAGGGGACGCAATTAATTGAATTTGCGGGTTTTGTGGGCCGGATAAGGCGTTCGCGCCCCATCCGGAATAATACACGCGCACTTTTCCGGCCTC > NC_000913/1180379‑1180476 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |