| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2538565 = | NA (NA) | 3 (0.030) | 3/164 | NT | NA | noncoding (31/98 nt) | RIP174 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP174 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | NC_000913 | 4137789 = | NA (NA) | noncoding (1/98 nt) | RIP307 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP307 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
GCATCGGAGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACAAGGTTTCTGCAATATATTGAATTAGCACGATTTTGTAGgccggat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/2538662‑2538565‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCGGATGCGGAGTGAACGCCTTATCCGGCCTACA > NC_000913/4137789‑4137823 GCATCGGAGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACAAGGTTTCTGCAATATATTGAATTAGCACGATTTTGTAGGC > 2:1059471/1‑100GCATCGGAGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACAAGGTTTCTGCAATATATTGAATTAGCACGATTTTGTAGG > 2:1688509/1‑99 CATCGGAGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACAAGGTTTCTGCAATATATTGAATTAGCACGATTTTGTAGGCC > 1:1952981/1‑100 ATCGGAGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACAAGGTTTCTGCAATATATTGAATTAGCACGATTTTGTAGGCCG > 2:56498/1‑100 TCGGAGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACAAGGTTTCTGCAATATATTGAATTAGCACGATTTTGTAGGCCGG < 1:1068480/100‑1 TCGGAGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACAAGGTTTCTGCAATATATTGAATTAGCACGATTTTGTAGGCCGG < 2:1295502/100‑1 TCGGAGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACAAGGTTTCTGCAATATATTGAATTAGCACGATTTTGTAGGCCGG < 2:626829/100‑1 CGGAGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACAAGGTTTCTGCAATATATTGAATTAGCACGATTTTGTAGGCCGGA < 2:1748246/100‑1 GGAGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACAAGGTTTCTGCAATATATTGAATTAGCACGATTTTGTAGGCCGGAT > 2:2813945/1‑100 AACTGCCTGATGCGCTACGCTTATCAGGCCTACAAGGTTTCTGCAATATATTGAATTAGCACGATTTTGTAGGCCGGATGCGGCGTAAACGCCTTATCCG < 2:1224545/100‑1 AACTGCCTGATGCGCTACGCTTATCAGGCCTACAAGGTTTCTGCAATATATTGAATTAGCACGATTTTGTAGGCCGGATGCGGCGTAAACGCCTTATCC < 1:450121/99‑1 TGATGCGCTACGCTTATCAGGCCTACAAGGTTTCTGCAATATATTGAATTAGCACGATTTTGTAGGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACA < 1:3017732/100‑1 GCATCGGAGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACAAGGTTTCTGCAATATATTGAATTAGCACGATTTTGTAGgccggat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/2538662‑2538565‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCGGATGCGGAGTGAACGCCTTATCCGGCCTACA > NC_000913/4137789‑4137823 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |