| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3094073 | NA (NA) | 10 (0.100) | 5/164 | NT | NA | noncoding (108/125 nt) | REP216 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP216 (repetitive extragenic palindromic) element; contains 3 REP sequences |
| ? | NC_000913 | = 3094083 | NA (NA) | noncoding (118/125 nt) | REP216 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP216 (repetitive extragenic palindromic) element; contains 3 REP sequences | |||||
CGGATGCGGCGTGAACACCTTATCCAGCACACATCTGGCAGCGGCTATAGGTCTGATAAGACGCGTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGGCCCGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3093968‑3094073‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccgatGCGCAAGCTTATCGGGCCTACAAAGGCAATAAATGTCTGATGCGACGCTAACGCGTCTTATCAGACCTATAGCCGCTGCCAGATGTGTGCTGGATAAGG < NC_000913/3094083‑3093985 CGGATGCGGCGTGAACACCTTATCCAGCACACATCTGGCAGCGGCTATAGGTCTGATAAGACGCGTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGG > 2:855225/1‑100CGGATGCGGCGTGAACACCTTATCCAGCACACATCTGGCAGCGGCTATAGGTCTGATAAGACGCGTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGG < 1:1483804/100‑1CGGATGCGGCGTGAACACCTTATCCAGCACACATCTGGCAGCGGCTATAGGTCTGATAAGACGCGTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGG < 1:2934669/100‑1CGGATGCGGCGTGAACACCTTATCCAGCACACATCTGGCAGCGGCGATAGGGGTGATAAGACGCGTTAGCGTGGCATCAGACATTTGGTGCCTTTGTAGG > 2:1665884/1‑100 GATGCGGCGTGAACACCTTATCCAGCACACATCTGGCAGCGGCTATAGGTCTGATAAGACGCGTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGGCC < 1:2046032/100‑1 GATGCGGCGTGAACACCTTATCCAGCACACATCTGGCAGCGGCTATAGGTCTGATAAGACGCGTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGGCC < 1:373691/100‑1 ATGCGGCGTGAACACCTTATCCAGCACACATCTGGCAGCGGCTATAGGTCTGATAAGACGCGTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGGCCn < 1:362500/100‑2 ATGCGGCGTGAACACCTTATCCAGCACACATCTGGCAGCGGCTATAGGTCTGATAAGACGCCTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGGCCC < 1:1886349/100‑1 TGCGGCGTGAACACCTTATCCAGCACACATCTGGCAGCGGCTATAGGTCTGATAAGACGCGTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGGCCCG < 2:2102025/100‑1 GCGGCGTGAACACCTTATCCAGCACACATCTGGCAGCGGCTATAGGTCTGATAAGACGCGTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGGCCCGA > 2:1128335/1‑100 CGGCGTGAACACCTTATCCAGCACACATCTGGCAGCGGCTATAGGTCTGATAAGACGCGTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGGCCCGAT > 2:2673937/1‑100 CCAGCACACATCTGGTAGCGGCTATAGGTCTGATAAGACGCGTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGGCCCGATGCGCAAGCTTATCGGGC < 2:3019532/100‑1 CCAGCACACATCTGGCAGCGGCTATAGGTCTGATAAGACGCGTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGGCCCGATGCGCAAGCTTATCGGGC < 2:382470/100‑1 CCAGCACACAGCTGGCAGCGGCTATAGGTCTGATAAGACGCGTTAGCGGCGCATCAGACATTTATTGCCTTTGTAGGCCCGATGCGCAAGCTTATCGGGC < 1:2882779/100‑1 catCACACATGTGGCAGCGTCTATACGTCTGATAAGACGCGTTAGCGGCGCATCAGACATTTATTGCCTTTGTAGGCCCGATGCGCAAGCTTATCGGGC < 1:2480053/96‑1 CAGCACACATCTGGCAGCGGCTATAGGTCTGATAAGACGCGTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGGCCCGATGCGCAAGCTTATCGGGCC < 2:830902/100‑1 CAGCACACATCTGGCAGCGGCTATAGGTCTGATAAGACGCGTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGGCCCGATGCGCAAGCTTATCGGGCC < 2:1946658/100‑1 CAGCACACATCTGGCAGCGGCTATAGGTCTGATAAGACGCGTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGGCCCGATGCGCAAGCTTATCGGGCC < 2:1219767/100‑1 ATCTGGCAGCGGCTATAGGTCTGATAAGACGCGTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGGCCCGATGCGCAAGCTTATCGGGCCTACAAAGG < 1:1087009/100‑1 CTGGCAGCGGCTATAGGTCTGATAAGACGCGTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGGCCCGATGCGCAAGCTTATCGGGCCTACAAAGGC < 1:2349223/99‑1 CTTTGTAGGCCCGATAAGCTTGCGCATCGGGCCTACAAAGGCAATAAATGTCTGATGCGACGCTAACGCGTCTTATCAGACCTATAGCCGCTGCCAGATG > 1:456479/1‑100 GCCCGATGCGCAAGCTTATCGGGCCTACAAAGGCAATAAATGTCTGATGCGACGCTAACGCGTCTTATCAGACCTATAGCCGCTGCCAGATGTGTGCTGG < 2:1466815/100‑1 GCCCGATGCGCAAGCTTATCGGGCCTACAAAGGCAATAAATGTCTGATGCGACGCTAACGCGTCTTATCAGACCTATAGCCGCTGCCAGATGTGTGCTGG < 2:1466787/100‑1 GCCCGATGCGCAAGCTTATCGGGCCTACAAAGGCAATAAATGTCTGATGCGACGCTAACGCGTCTTATCAGACCTATAGCCGCTGCCAGATGAGTGCTGG > 2:1782313/1‑100 CCCGATGCGCAAGCTTATCGGGCCTACAAAGGCAATAAATGTCTGATGCGACGCTAACGCGTCTTATCAGACCTATAGCCGCTGCCAGATGTGTGCTGG < 1:2350926/99‑1 CCCCATGCGCAAGCTTATCGCCCCTACAAAGACAATAAATGTCTGATGCGACGCTAACGCGTCTTATCAGACCTATAGCCGCTGCCAGATGTGTGCTGGA < 2:2741945/100‑1 CCGATGCGCAAGCTTATCGGGCCTACAAAGGCAATAAATGTCTGATGCGACGCTAACGCGTCTTATCAGACCTATAGCCGCTGCCAGATGTGTGCTGGAT < 2:1692339/100‑1 CCGATGCGCAAGCTTATCGGGCCTACAAAGGCAATAAATGTCTGATGCGACGCTAACGCGTCTTATCAGACCTATAGCCGCTGCCAGATGTGTGCTGGAT < 2:1980577/100‑1 CCGATGCGCAAGCTTATCGGGCCTACAAAGGCAATAAATGTCTGATGCGACGCTAACGCGTCTTATCAGACCTATAGCCGCTGCCAGATGTGTGCTGGAT > 1:2462965/1‑100 CCGATGCGCAAGCTTATCGGGCCTACAAAGGCAATAAATGTCTGATGCGACGCTAACGCGTCTTATCAGACCTATAGCCGCTGCCAGATGTGTGCTGGAT > 2:3053196/1‑100 ATGCGCAAGCTTATCGGGCCTACAAAGGCAATAAATGTCTGATGCGACGCTAACGCGTCTTATCAGACCTATAGCCGCTGCCAGATGTGTGCTGGATAAG < 1:1346478/100‑1 TGCGTATGCTTATCGGGCCTACAAAGGCAATAAATGTCTGATGCGACGCTAACGCGTCTTATCAGACCTATAGCCGCTGCCAGATGTGTGCTGGATAAGG < 1:2401723/100‑1 TGCGCAAGCTTATCGGGCCTACAAAGGCAATAAATGTCTGATGCGACGCTAACGCGTCTTATCAGACCTATAGCCGCTGCCAGATGTGTGCTGGATAAGG < 2:1555789/100‑1 CGGATGCGGCGTGAACACCTTATCCAGCACACATCTGGCAGCGGCTATAGGTCTGATAAGACGCGTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGGCCCGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3093968‑3094073‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccgatGCGCAAGCTTATCGGGCCTACAAAGGCAATAAATGTCTGATGCGACGCTAACGCGTCTTATCAGACCTATAGCCGCTGCCAGATGTGTGCTGGATAAGG < NC_000913/3094083‑3093985 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |