New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 4317917 =NA (NA)4 (0.040) 3/164 NT NA noncoding (1/83 nt) REP323 (repetitive extragenic palindromic) element; contains 2 REP sequences REP323 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 4317949 = NA (NA)noncoding (33/83 nt) REP323 (repetitive extragenic palindromic) element; contains 2 REP sequences REP323 (repetitive extragenic palindromic) element; contains 2 REP sequences

Only 100 of 143 total aligned reads displayed.

GCGATTGAGGACGGGCAGGCGCACGCCGTTTTGCTGGTGCAGGATGAAGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGCA  >  NC_000913/4317818‑4318016
                                                                                                   |                                                                                                   
gcgATTGAGGACGGGCAGGCGCACGCCGTTTTGCTGGTGCAGGATGAAGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGgtg                                                                                                     >  2:552933/1‑100 (MQ=255)
   aTTGAGGACGGGCAGGCGCACGCCGTTTTGCTGGTGCAGGATGAAGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCg                                                                                                  <  2:413442/100‑1 (MQ=255)
   aTTGAGGACGGGCAGGCGCACGCCGTTTTGCTGGTGCAGGATGAAGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCg                                                                                                  >  2:2780508/1‑100 (MQ=255)
    ttGAGGACGGGCAGGCGCACGCCGTTTTGCTGGTGCAGGATGAAGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCgg                                                                                                 >  2:1357048/1‑100 (MQ=255)
    ttGAGGACGGGCAGGCGCACGCCGTTTTGCTGGTGCAGGATGAAGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCgg                                                                                                 >  1:368124/1‑100 (MQ=255)
    atacacagctgctggtgtcatcggttttgcagaattgagccggtgccggatgcggcgtaaacgccttatccggcctacaaatgcgctccccgtagGTCgg                                                                                                 <  2:920203‑M1/5‑1 (MQ=255)
    atacacagctgctggtgtcatcggttttgcagaattgagccggtgccggatgcggcgtaaacgccttatccggcctacaaatgcgctccccgtagGTCgg                                                                                                 <  1:312452‑M1/5‑1 (MQ=255)
     tacacagctgctggtgtcatcggttttgcagaattgagccggtgccggatgcggcgtaaacgccttatccggcctacaaatgcgctccccgtagGTCGGa                                                                                                <  2:2239676‑M1/6‑1 (MQ=255)
     tacacagctgctggtgtcatcggttttgcagaattgagccggtgccggatgcggcgtaaacgccttatccggcctacaaatgcgctccccgtagGTCGGa                                                                                                >  1:759027‑M1/95‑100 (MQ=255)
      gAGGACGGGCAGGCGCACGCCGTTTTGCTGGTGCAGGATGAAGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGAt                                                                                               >  2:1023153/1‑100 (MQ=255)
      gAGGACGGGCAGGCGCACGCCGTTTTGCTGGTGCAGGATGAAGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGAt                                                                                               >  1:1272933/1‑100 (MQ=255)
      aaGGACGGGCAGGCGCACGCCGTTTTGCTGGTGCAGGATGAAGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGAt                                                                                               >  1:1038477/2‑100 (MQ=255)
       aGGACGGGCAGGCGCACGCCGTTTTGCTGGTGCAGGATGAAGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATg                                                                                              <  1:530921/100‑1 (MQ=255)
        ggACGGGCAGGCGCACGCCGTTTTGCTGGTGCAGGATGAAGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGc                                                                                             <  2:532499/100‑1 (MQ=255)
        ggACGGGCAGGCGCACGCCGTTTTGCTGGTGCAGGATGAAGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGc                                                                                             <  2:2615378/100‑1 (MQ=255)
        ggACGGGCAGGCGCACGCCGTTTTGCTGGTGCAGGATGAAGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGc                                                                                             <  2:2614615/100‑1 (MQ=255)
             ggCAGGCGCACGCCGTTTTGCTGGTGCAGGATGAAGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGc                                                                                        >  1:22422/1‑100 (MQ=255)
             ggCAGGCGCACGCCGTTTTGCTGGTGCAGGATGAAGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGc                                                                                        >  2:1756906/1‑100 (MQ=255)
             ggCAGGCGCACGCCGTTTTGCTGGTGCAGGATGAAGGTTTTACTGACGCTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGCAGGATGCGACg                                                                                         >  2:206741/1‑99 (MQ=255)
              gctgctgtcatcggttttgcaggattgagccggtgccggatgcggcgtaaacgccttatccggcctacaaatgcgctccccgtagGTCGGAt                                                                                               >  1:60006‑M1/86‑92 (MQ=255)
               cAGGCGCACGCCGTTTTGCTGGTGCAGGATGAAGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTg                                                                                      <  2:1791765/100‑1 (MQ=255)
                 ggCGCACGCCGTTTTGCTGGTGCAGGATGAAGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGAc                                                                                    >  1:538793/1‑100 (MQ=255)
                 ggCGCACGCCGTTTTGCTGGTGCAGGATGAAGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGAc                                                                                    >  1:325673/1‑100 (MQ=255)
                    gcACGCCGTTTTGCTGGTGCAGGATGAAGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGAcgcg                                                                                 <  2:2576869/100‑1 (MQ=255)
                    gcACGCCGTTTTGCTGGTGCAGGATGAAGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGAcgcg                                                                                 <  2:2018953/100‑1 (MQ=255)
                      aCGCCGTTTTGCTGGTGCAGGATGAAGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTc                                                                               <  2:2065051/100‑1 (MQ=255)
                      aCGCCGTTTTGCTGGTGCAGGATGAAGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTAGGGTGTCGGATGCGACGCTGACGCGt                                                                                >  2:1173977/1‑99 (MQ=255)
                      aCGCCGTTTTGCTGGTGCAGGATGAAGGTTTTACTGACGTTTTGTACGCTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTc                                                                               >  1:1410475/1‑100 (MQ=255)
                       cGCCGTTTTGCTGGTGCAGGATGAAGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCt                                                                              <  1:2176771/100‑1 (MQ=255)
                       cGCCGTTTTGCTGGTGCAGGATGAAGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCt                                                                              <  1:1575815/100‑1 (MQ=255)
                        gCCGTTTTGCTGGTGCAGGATGAAGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTTGGATGCGACGCTGACGCGTCtc                                                                             <  1:1771542/100‑2 (MQ=255)
                          cGTTTTGCTGGTGCAGGATGAAGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTAt                                                                           >  1:2086089/1‑100 (MQ=255)
                          cGTTTTGCTGGTGCAGGATGAAGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTAt                                                                           <  2:2137539/100‑1 (MQ=255)
                            ttttgcagaattgagccggtgccggatgcggcgtaaacgccttatccggcctacaaatgcgctccccgtagGTCGGATGCGACGCTGACGCGTCTTATcc                                                                         >  1:327698‑M1/72‑100 (MQ=255)
                            ttttGCTGGTGCAGGATGAAGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATcc                                                                         <  2:1118316/100‑1 (MQ=255)
                             tttGCTGGTGCAGGATGAAGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCg                                                                        <  1:158745/100‑1 (MQ=255)
                               tGCTGGTGCAGGATGAAGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGAc                                                                      >  2:2579041/1‑100 (MQ=255)
                                gcagaattgagccggtgccggatgcggcgtaaacgccttatccggcctacaaatgcgctccccgtagGTCGGATGCGACGCTGACGCGTCTTATCCGAcc                                                                     >  2:372361‑M1/68‑100 (MQ=255)
                                   ggTGCAGGATGAGGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTAc                                                                  >  1:1040199/1‑100 (MQ=255)
                                     tGCAGGATGAAGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACgg                                                                <  1:2873461/100‑1 (MQ=255)
                                     tGCAGGATGAAGGTTTTACTGACGTTTTGTACGTTAATCATTTGTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACgg                                                                <  1:1959685/100‑1 (MQ=255)
                                      gCAGGATGAAGGTTTTACCGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACggg                                                               <  1:470761/100‑1 (MQ=255)
                                       cAGGATGAAGGTTTTACTGACGTTTTGTACGTTAATCCTTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACgggg                                                              >  1:1631536/1‑100 (MQ=255)
                                       cAGGATGAAGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACgggg                                                              <  2:1325601/100‑1 (MQ=255)
                                        aGGATGAGGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGa                                                             >  2:1611795/1‑100 (MQ=255)
                                        aGGATGAAGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCAGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGa                                                             >  1:2054380/1‑100 (MQ=255)
                                           aTGAAGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAgcg                                                          <  2:2377894/100‑1 (MQ=255)
                                           aTGAAGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAgcg                                                          <  2:1713028/100‑1 (MQ=255)
                                           aTGAAGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAgcg                                                          <  2:465071/100‑1 (MQ=255)
                                               aGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCAtt                                                      >  2:2462266/1‑100 (MQ=255)
                                                ggTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCAttt                                                     <  1:1606902/100‑1 (MQ=255)
                                                 gTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTg                                                    <  2:2498116/100‑1 (MQ=255)
                                                 gTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTg                                                    <  1:1023147/100‑1 (MQ=255)
                                                  ttttACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGt                                                   >  2:69184/1‑100 (MQ=255)
                                                   tttACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTa                                                  >  2:729242/1‑100 (MQ=255)
                                                   tttACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTa                                                  <  1:1367678/100‑1 (MQ=255)
                                                       cTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGTATGCGACGCTGACGCTTCTTATCCGACCTACGGGGAGCGCATTTGTAGGcc                                              >  1:2552297/1‑100 (MQ=255)
                                                       cTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGcc                                              >  1:1297565/1‑100 (MQ=255)
                                                         gACGTTTTGTACGTTACTCATTTTTCGCCTCGTGGCTCGGTTGCCGGATGCGACGCTGACGCCTCTTCTCCGCCCTACCCGCAGAGCATGTGTAGGc                                               >  1:2651463/1‑97 (MQ=21)
                                                         gACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCgg                                            <  2:1548815/100‑1 (MQ=255)
                                                         gACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCgg                                            >  2:2087339/1‑100 (MQ=255)
                                                         gACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCgg                                            <  1:1114479/100‑1 (MQ=255)
                                                           cGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGAt                                          <  1:1229658/100‑1 (MQ=255)
                                                            gTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATa                                         >  1:162033/1‑100 (MQ=255)
                                                               ttGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAgg                                      <  1:1980678/100‑1 (MQ=255)
                                                                  tACGTTAATCTTTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGATCTACTGGGAGCGCATTTGTAGGCCGGATAAGGCGt                                   <  1:1810002/100‑1 (MQ=255)
                                                                   aCGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGCTAAGGCGtt                                  >  1:1392833/1‑100 (MQ=255)
                                                                    cGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGTCCGGATAAGGCGttt                                 >  2:3019985/1‑100 (MQ=255)
                                                                    cGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGttt                                 <  1:962577/100‑1 (MQ=255)
                                                                    cGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGttt                                 >  1:2167453/1‑100 (MQ=255)
                                                                    cGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGttt                                 >  1:2249394/1‑100 (MQ=255)
                                                                    cGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGttt                                 >  2:1952052/1‑100 (MQ=255)
                                                                     gTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCCTTTGTAGGCCGGATAAGGCGttt                                 >  1:1935795/1‑99 (MQ=255)
                                                                     gTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGAtgcggcgtaaa                                <  2:2770292/100‑11 (MQ=255)
                                                                        aaTCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTAcgc                             >  1:2803400/1‑100 (MQ=255)
                                                                        aaTCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTAcgc                             >  1:1083032/1‑100 (MQ=255)
                                                                        aaTCATTTTTCGCCTCGTGGTTCGGGTGTCGCATGCGTCGCTGACGCTTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTAcgc                             <  1:2064963/100‑1 (MQ=25)
                                                                         aTCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTAcgcc                            <  2:270757/100‑1 (MQ=255)
                                                                          tCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTAcgccg                           <  2:304878/100‑1 (MQ=255)
                                                                          tCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTAcgccg                           >  2:2880307/1‑100 (MQ=255)
                                                                           cATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTAcgccgc                          >  1:316513/1‑100 (MQ=255)
                                                                              ttttCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATc                       >  1:1148963/1‑100 (MQ=255)
                                                                                  cGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGc                   <  1:2084302/100‑1 (MQ=255)
                                                                                   gCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGc                   <  1:2671606/99‑1 (MQ=255)
                                                                                   gCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCa                  >  1:848777/1‑100 (MQ=255)
                                                                                   gCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCa                  >  1:611288/1‑100 (MQ=255)
                                                                                     cTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAcc                >  2:1796131/1‑100 (MQ=255)
                                                                                          ggTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGTTAAGGCGTTTACGCCGCATCCGGCACCGGCTc           <  2:2900951/100‑1 (MQ=255)
                                                                                          ggTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTc           >  1:3029481/1‑100 (MQ=255)
                                                                                          ggTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTc           <  1:2383197/100‑1 (MQ=255)
                                                                                             tCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAAt        <  2:2353782/100‑1 (MQ=255)
                                                                                                ggTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCt     <  1:2215713/100‑1 (MQ=255)
                                                                                                ggTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCt     >  2:677904/1‑100 (MQ=255)
                                                                                                 gtgtCGGATGCGACGCTGACGCGTCTTATCCGGCCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTg    <  1:1171022/100‑1 (MQ=255)
                                                                                                 gtgtCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTg    <  2:1410481/100‑1 (MQ=255)
                                                                                                 gtgtCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTg    <  2:1075995/100‑1 (MQ=255)
                                                                                                 gtgtCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCACATCCGGCACCGGCTCAATTCTg    <  1:728589/100‑1 (MQ=255)
                                                                                                  tgtCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGc   <  2:2466722/100‑1 (MQ=255)
                                                                                                   GTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGCa  <  1:2486787‑M1/100‑1 (MQ=255)
                                                                                                   GTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGCa  >  1:1371472‑M1/1‑100 (MQ=255)
                                                                                                   |                                                                                                   
GCGATTGAGGACGGGCAGGCGCACGCCGTTTTGCTGGTGCAGGATGAAGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGCA  >  NC_000913/4317818‑4318016

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.