Predicted mutation
evidence seq id position mutation freq annotation gene description
JC JC NC_000913 1,979,486 IS5 (+) +4 bp 100% intergenic (‑271/‑264) insA ← / → uspC IS1 repressor TnpA/universal stress protein

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 1979486 =0 (0.000)99 (0.880) 64/178 NT 100% intergenic (‑271/‑267) insA/uspC IS1 repressor TnpA/universal stress protein
?NC_000913 2101749 = NA (NA)noncoding (1195/1195 nt) IS5 repeat region
* ? NC_000913 = 19794890 (0.000)96 (0.850) 65/178 NT 100% intergenic (‑274/‑264) insA/uspC IS1 repressor TnpA/universal stress protein
?NC_000913 = 2290113 NA (NA)noncoding (1/1195 nt) IS5 repeat region

Only 100 of 265 total aligned reads displayed.

GTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTT  >  NC_000913/1979387‑1979585
                                                                                                   |                                                                                                   
tgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccc                                                                                                     <  2:1885004‑M1/1‑1 (MQ=255)
gTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAAc                                                                                                     >  2:1983634/1‑100 (MQ=255)
gTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAAc                                                                                                     >  1:1551465/1‑100 (MQ=255)
 tCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACt                                                                                                    <  1:1173899/100‑1 (MQ=255)
 gattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCt                                                                                                    <  2:1140233‑M1/2‑1 (MQ=255)
 gattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCt                                                                                                    >  2:1003254‑M1/99‑100 (MQ=255)
  cAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTa                                                                                                   <  1:2793115/100‑1 (MQ=255)
  attcaaggcatttacgggagaaaaaatcggctcaatcatgaagaactgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccc                                                                                                     >  1:700157‑M1/98‑98 (MQ=255)
  attcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTa                                                                                                   <  2:2085771‑M1/3‑1 (MQ=255)
  attcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTa                                                                                                   <  2:1292252‑M1/3‑1 (MQ=255)
  attcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTa                                                                                                   <  1:383195‑M1/3‑1 (MQ=255)
   ttcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTaa                                                                                                  <  1:1062248‑M1/4‑1 (MQ=255)
   ttcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTaa                                                                                                  <  2:191262‑M1/4‑1 (MQ=255)
   ttcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTaa                                                                                                  <  2:1816103‑M1/4‑1 (MQ=255)
   ttcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTaa                                                                                                  <  2:170453‑M1/4‑1 (MQ=255)
   ttcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTaa                                                                                                  <  1:2288479‑M1/4‑1 (MQ=255)
   aaaaTAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTaa                                                                                                  >  1:2035125/1‑100 (MQ=255)
    aaaTAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTaa                                                                                                  >  1:2158815/1‑99 (MQ=255)
     caaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAtt                                                                                                <  1:1010261‑M1/6‑1 (MQ=255)
      ctggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTa                                                                                               >  2:1753078‑M1/94‑100 (MQ=255)
        ggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATtaag                                                                                             <  1:1753068‑M1/9‑2 (MQ=255)
         gcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAAt                                                                                            >  2:2571403‑M1/91‑100 (MQ=255)
         aCTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaagg                                                                                            >  2:2659045‑M1/1‑94 (MQ=255)
         aCTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTGACCGCACAACAAACTAAggaagg                                                                                            <  1:1445739‑M1/100‑7 (MQ=255)
          catttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATa                                                                                           <  1:2693863‑M1/11‑1 (MQ=255)
          cTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTCCCGCACAACAAACCAAggaaag                                                                                            <  1:2903587‑M1/99‑7 (MQ=255)
          cTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggt                                                                                           >  1:896175‑M1/1‑93 (MQ=255)
           tCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtg                                                                                          <  2:1111578‑M1/100‑9 (MQ=255)
            cACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgc                                                                                         >  1:2259766‑M1/1‑91 (MQ=255)
            cACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgc                                                                                         <  2:359541‑M1/100‑10 (MQ=255)
            cACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgc                                                                                         >  1:1907912‑M1/1‑91 (MQ=255)
              ccGTAAATAATCCTCTGCTATAAATAATCACTTTCATGCAATACCAAATAACCTATTTTTAAACACACACTTCCCGCACAATAACCTAAggaagg                                                                                            <  1:2191729‑M1/95‑7 (MQ=255)
               cGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaa                                                                                      <  1:1512821‑M1/100‑13 (MQ=255)
               acgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcacacattccCTAATTAAATACaaag                                                                                      <  2:680454‑M1/16‑1 (MQ=255)
                 tAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaaca                                                                                    >  1:2386259‑M1/1‑86 (MQ=255)
                    agaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAgg                                                                                 >  1:518140‑M1/80‑100 (MQ=255)
                     gaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGc                                                                                <  1:787075‑M1/22‑1 (MQ=255)
                      aatCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtcc                                                                               <  2:2035137‑M1/100‑20 (MQ=255)
                        tcatcTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccct                                                                             <  1:263855‑M1/100‑22 (MQ=255)
                             cggctcaaacatgaagaaatgaaatgactgattcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCa                                                                        <  1:1979813‑M1/30‑1 (MQ=255)
                             cggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttcccctcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCa                                                                        >  1:1703536‑M1/71‑100 (MQ=255)
                               cTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatga                                                                      <  1:747645‑M1/100‑29 (MQ=255)
                                tataAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgag                                                                     <  2:2634947‑M1/100‑30 (MQ=255)
                                  caaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACtta                                                                   <  2:2642138‑M1/35‑1 (MQ=255)
                                     ataatCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgatatcat                                                                >  1:1331681‑M1/1‑66 (MQ=255)
                                     acatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACttaatg                                                                >  1:1257017‑M1/63‑100 (MQ=255)
                                       aatCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgt                                                              <  2:2804693‑M1/100‑37 (MQ=255)
                                        tgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACttaatgtta                                                             <  2:2466399‑M1/41‑1 (MQ=255)
                                        tgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACttaatgtta                                                             <  2:1236653‑M1/41‑1 (MQ=255)
                                          cACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttg                                                           <  1:1139921‑M1/100‑40 (MQ=255)
                                          cACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttg                                                           <  2:2842245‑M1/100‑40 (MQ=255)
                                          cACTGTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttg                                                           <  2:891803‑M1/100‑40 (MQ=255)
                                            cTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtc                                                         >  2:1375956‑M1/1‑59 (MQ=255)
                                              aatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGaaa                                                       <  2:810783‑M1/47‑1 (MQ=255)
                                               atgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAAt                                                      <  2:2886155‑M1/48‑1 (MQ=255)
                                               atgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAAt                                                      <  1:1492656‑M1/48‑1 (MQ=255)
                                                cATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatct                                                     <  2:1502033‑M1/100‑46 (MQ=255)
                                                 gaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAAt                                                      <  1:613253‑M1/48‑1 (MQ=255)
                                                 gaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGt                                                    >  1:1192721‑M1/51‑100 (MQ=255)
                                                    cAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggag                                                 <  2:1473186‑M1/100‑50 (MQ=255)
                                                     tgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTa                                                >  2:434318‑M1/47‑100 (MQ=255)
                                                      gactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTAc                                               >  2:409897‑M1/46‑100 (MQ=255)
                                                       tACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagcca                                              <  2:2239199‑M1/100‑53 (MQ=255)
                                                       actgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACa                                              >  1:367794‑M1/45‑100 (MQ=255)
                                                        ctgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACat                                             <  1:1996084‑M1/57‑1 (MQ=255)
                                                        ctgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACat                                             <  1:773388‑M1/57‑1 (MQ=255)
                                                         ccAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccata                                            <  1:178239‑M1/100‑55 (MQ=255)
                                                          cAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatag                                           <  2:1551473‑M1/100‑56 (MQ=255)
                                                            gtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACatatat                                         >  2:614328‑M1/40‑100 (MQ=255)
                                                                aGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatataacagg                                     >  2:39380‑M1/1‑39 (MQ=255)
                                                                 gCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacaggg                                    <  2:1908540‑M1/100‑63 (MQ=255)
                                                                 ccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAAcc                                    <  1:3012491‑M1/66‑1 (MQ=255)
                                                                  cgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCa                                   <  1:1081536‑M1/67‑1 (MQ=255)
                                                                  cgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCa                                   <  2:2280829‑M1/67‑1 (MQ=255)
                                                                     gaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACtt                                <  2:2453681‑M1/70‑1 (MQ=255)
                                                                         aatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGttt                            >  2:778724‑M1/27‑100 (MQ=255)
                                                                                ccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCgg                     >  2:2950173‑M1/20‑100 (MQ=255)
                                                                                 cacTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatc                    <  1:2938552‑M1/100‑79 (MQ=255)
                                                                                 cacTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatc                    >  2:161055‑M1/1‑22 (MQ=255)
                                                                                  gcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGgag                   >  2:2336172‑M1/18‑100 (MQ=255)
                                                                                    ttACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaac                 <  1:966424‑M1/100‑82 (MQ=255)
                                                                                     tattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAAt                <  2:661445‑M1/86‑1 (MQ=255)
                                                                                      attcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATc               >  1:2269388‑M1/14‑100 (MQ=255)
                                                                                      attcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATc               <  2:101127‑M1/87‑1 (MQ=255)
                                                                                      attcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATc               >  2:531674‑M1/14‑100 (MQ=255)
                                                                                      aCCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaactt               >  1:85160‑M1/1‑17 (MQ=255)
                                                                                       ttcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCa              <  2:157185‑M1/88‑1 (MQ=255)
                                                                                         cgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGt            <  1:587580‑M1/90‑1 (MQ=255)
                                                                                          gcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTa           <  2:2013‑M1/91‑1 (MQ=255)
                                                                                          gcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTa           <  1:266795‑M1/91‑1 (MQ=255)
                                                                                            caacaaACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaaaagggttcatcatgagtcatcaacttaccttc         >  2:2788632‑M1/1‑11 (MQ=255)
                                                                                             ccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTacac        <  2:1671138‑M1/94‑1 (MQ=255)
                                                                                               ttccCTAATTAAATACAAAGAAAGGCAACAAGCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTa      >  2:235859‑M1/5‑100 (MQ=255)
                                                                                                aaaCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagagcagggttcatcatgagtcatcaacttaccttcgccg     <  2:2158827‑M1/100‑94 (MQ=255)
                                                                                                  cCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTAttt   <  2:1653357‑M1/99‑1 (MQ=255)
                                                                                                  aCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgac   >  2:539549‑M1/1‑5 (MQ=255)
                                                                                                  aCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgac   <  1:571235‑M1/100‑96 (MQ=255)
                                                                                                  aCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgac   <  1:141697‑M1/100‑96 (MQ=255)
                                                                                                   cTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgaca  <  2:705683‑M1/100‑97 (MQ=255)
                                                                                                   cTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgaca  <  1:469005‑M1/100‑97 (MQ=255)
                                                                                                   |                                                                                                   
GTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTT  >  NC_000913/1979387‑1979585

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.