| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2729439 | 1 (0.010) | 5 (0.050) | 5/168 | NT | 84.1% | noncoding (6/76 nt) | gltW | tRNA‑Glu |
| ? | NC_000913 | 3943424 = | NA (NA) | intergenic (+75/‑11) | rrsC/gltU | 16S ribosomal RNA of rrnC operon/tRNA‑Glu | |||||
TCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACT > NC_000913/2729340‑2729538 | tCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAG > 2:2409718‑M1/1‑100 (MQ=255)tCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAG < 2:2293766‑M1/100‑1 (MQ=255)tCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAG > 2:2115182‑M1/1‑100 (MQ=255)tCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAG < 2:2014589‑M1/100‑1 (MQ=255) cAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGCTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGcagactgatacgtccccttcgt < 2:2151821‑M1/100‑23 (MQ=255) gCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGcagactgatacgtccccttcgtc < 1:1983314‑M1/99‑24 (MQ=255) cAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGcagactgatacgtccccttcgtcta < 2:2593873‑M1/100‑26 (MQ=255) aaGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGcagactgatacgtccccttcgtctag < 1:1473067‑M1/100‑27 (MQ=255) aGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGcagactgatacgtccccttcgtctaga < 1:2969460‑M1/100‑28 (MQ=255) cTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCAACGCGTGataag < 2:2029818/100‑3 (MQ=1) cGAAGcagactgatacgtccccttcgtctagaggcccaggacaccgccctttcacggcggtaacaggggttcgaatcccctaggggacgccacttgctgg > 1:907366‑M1/1‑5 (MQ=255) cGAAGcagactgatacgtccccttcgtctagaggcccaggacaccgccctttcacggcggtaacaggggttcgaatcccctaggggacgccacttgctgg > 2:1975353‑M1/1‑5 (MQ=255) cGAAGcagactgatacgtccccttcgtctagaggcccaggacaccgccctttcacggcggtaacaggggttcgaatcccctaggggacgccacttgctgg < 1:1113350‑M1/100‑96 (MQ=255) cGAAGcagactgatacgtccccttcgtctagaggcccaggacaccgccctttcacggcggtaacaggggttcgaatcccctaggggacgccacttgctgg < 1:2451738‑M1/100‑96 (MQ=255) cGAAGcagactgatacgtccccttcctctagaggcccaggacaccgccctttcacggcgggaacaggggttcgaatcccctaggggacgccacttg > 2:1977682‑M1/1‑5 (MQ=255) gAAGcagactgatacgtccccttcgtctagaggcccaggacaccgccctttcacggcggtaacaggggttcgaatcccctaggggacgccacttgctggt > 1:968374‑M1/1‑4 (MQ=255) gAAGcagactgatacgtccccttcgtctagaggcccaggacaccgccctttcacggcggtaacaggggttcgaatcccctaggggacgccacttgctggt > 1:1540568‑M1/1‑4 (MQ=255) aaGcagactgatacgtccccttcgtctagaggcccaggacaccgccctttcacggcggtaacaggggttcgaatcccctaggggacgccacttgctggtt < 1:36368‑M1/100‑98 (MQ=255) aaGcagactgatacgtccccttcgtctagaggcccaggacaccgccctttcacggcggtaacaggggttcgaatcccctaggggacgccacttgctggtt < 1:2926483‑M1/100‑98 (MQ=255) aaGcagactgatacgtccccttcgtctagaggcccaggacaccgccctttcacggcggtaacaggggttcgaatcccctaggggacgccacttgctggtt > 2:1673165‑M1/1‑3 (MQ=255) aaGcagactgatacgtccccttcgtctagaggcccaggacaccgccctttcacggcggtaacaggggttcgaatcccctaggggacgccacttgctggtt < 1:1433159‑M1/100‑98 (MQ=255) aaGcagactgatacgtccccttcgtctagaggcccaggacaccgccctttcacggcggtaacaggggttcgaatcccctaggggacgccacttgctggtt < 1:1296422‑M1/100‑98 (MQ=255) gcagactgatacgtccccttcgtctagaggcccaggacaccgccctttcacggcggtaacaggggttcgaatcccctaggggacgccacttgctggtttg < 2:1077701‑M1/100‑100 (MQ=255) gcagactgatacgtccccttcgtctagaggcccaggacaccgccctttcacggcggtaacaggggttcgaatcccctaggggacgccacttgctggtttg < 1:2555249‑M1/100‑100 (MQ=255) gcagactgatacgtccccttcgtctagaggcccaggacaccgccctttcacggcggtaacaggggttcgaatcccctaggggacgccacttgctggtttg > 1:2486518‑M1/1‑1 (MQ=255) gcagactgatacgtccccttcgtctagaggcccaggacaccgccctttcacggcggtaacaggggttcgaatcccctaggggacgccacttgctggtttg < 1:1912696‑M1/100‑100 (MQ=255) gcagactgatacgtccccttcgtctagaggcccaggacaccgccctttcacggcggtaacaggggttcgaatcccctaggggacgccacttgctggtttg < 2:2119016‑M1/100‑100 (MQ=255) gcagactgatacgtccccttcgtctagaggcccaggacaccgccctttcacggcggtaacaggggttcgaatcccctaggggacgccacttgctggtttg < 2:2297743‑M1/100‑100 (MQ=255) gcagactgatacgtccccttcgtctagaggcccaggacaccgccctttcacggcggtaacaggggttcgaatcccctaggggacgccacttgctggtttg > 1:1219913‑M1/1‑1 (MQ=255) | TCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACT > NC_000913/2729340‑2729538 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |