New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 3620562NA (NA)6 (0.060) 4/166 NT 100% coding (1371/4236 nt) rhsB Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
?NC_000913 = 3620587 0 (0.000)coding (1396/4236 nt) rhsB Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor

GCACAGACGGATGCCGCAGGCAGGACAACAGAGTACAGCCCGGATGTGGTGACGGGCCTCATCACGCGCATAACCACGCCGGATGGCAGGGCATCGGCGTTTTACTATAACCACCACAACCAGTTAACGTCAGCCACCGGGCCTGACGGGCTGGAATTGCGCCGGGAATATGATGAATTGGGCCGTCTGATTCAGGAAA  >  NC_000913/3620488‑3620686
                                                                                                   |                                                                                                    
gCACAGACGGATGCCGCAGGCAGGACAACAGAGTACAGCCCGGATGTGGTGACGGGCCTCATCACGCGCATAACCACGCCGGATGGCAGGGCATCGGCGT                                                                                                      <  2:2163678‑M2/100‑1 (MQ=255)
gCACAGACGGATGCCGCAGGCAGGACAACAGAGTACAGCCCGGATGTGGTGACGGGCCTCATCACGCGCATAACCACGCCGGATGGCAGGGCATCGGCGT                                                                                                      <  2:1729657‑M2/100‑1 (MQ=255)
catcatattcccggcgcaattccagcccgtcaggcccggtggctgacgttaactggttgtggtggttatagtaaaacgccgatgccctgccatcCGGCGt                                                                                                      <  2:963179‑M2/6‑1 (MQ=255)
                                           aTGTGGTGACGGGCCTCATCACGCGCATAACCACGCCGGATGGCAGGGCATCGGCGTTTTACTATAACCACCACAACCAGTTAACGTCAGCCACCGGGCC                                                          >  1:1479224‑M2/1‑100 (MQ=255)
                                           aTGTGGTGACGGGCCTCATCACGCGCATAACCACGCCGGATGGCAGGGCATCGGCGTTTTACTATAACCACCACAACCAGTTAACGTCAGCCACCGGGCC                                                          >  1:1540685‑M2/1‑100 (MQ=255)
                                           aTGTGGTGACGGGCCTCATCACGCGCATAACCACGCCGGATGGCAGGGCATCGGCGTTTTACTATAACCACCACAACCAGTTAACGTCAGCCACCGGGCC                                                          >  1:325764‑M2/1‑100 (MQ=255)
                                            tgtgGTGACGGGCCTCATCACGCGCATAACCACGCCGGATGGCAGGGCATCGGCGTTTTACTATAACCCCCACAACCAGTTAACGTCAGCCACCGGGCCT                                                         <  1:2683342‑M2/100‑1 (MQ=255)
                                            tgtgGTGACGGGCCTCATCACGCGCATAACCACGCCGGATGGCAGGGCATCGGCGTTTTACTATAACCACCACAACCAGTTAACGTCAGCCACCGGGCCT                                                         >  1:1516068‑M2/1‑100 (MQ=255)
                                            tgtgGTGACGGGCCTCATCACGCGCATAACCACGCCGGATGGCAGGGCATCGGCGTTTTACTATAACCACCACAACCAGTTAACGTCAGCCACCGGGCCT                                                         <  1:189558‑M2/100‑1 (MQ=255)
                                              tggtgACGGGCCTCATCACGCGCATAACCACGCCGGATGGCAGGGCATCGGCGTTTTACTATAACCACCACAACCAGTTAACGTCAGCCACCGGGCCTGA                                                       <  2:1898841‑M2/100‑1 (MQ=255)
                                               ggtgACGGGCCTCATCACGCGCATAACCACGCCGGATGGCAGGGCATCGGCGTTTTACTATAACCACCACAACCAGTTAACGTCAGCCACCGGGCCTGAC                                                      <  1:2756339‑M2/100‑1 (MQ=255)
                                                gtgACGGGCCTCATCACGCGCATAACCACGCCGGATGGCAGGGCATCGGCGTTTTACTATAACCACCACAACCAGTTAACGTCAGCCACCGGGCCTGACG                                                     <  2:2118625‑M2/100‑1 (MQ=255)
                                                gtgACGGGCCTCATCACGCGCATAACCACGCCGGATGGCAGGGCATCGGCGTTTTACTATAACCACCACAACCAGTTAACGTCAGCCACCGGGCCTGACG                                                     <  2:1172985‑M2/100‑1 (MQ=255)
                                                gtgACGGGCCTCATCACGCGCATAACCACGCCGGATGGCAGGGCATCGGCGTTTTACTATAACCACCACAACCAGTTAACGTCAGCCACCGGGCCTGACG                                                     <  1:975283‑M2/100‑1 (MQ=255)
                                                     gggCCTCATCACGCGCATAACCACGCCGGATGGCAGGGCATCGGCGTTTTACTATAACCACCACAACCAGTTAACGTCAGGCCCGGTGGCTGACGttaac                                                >  2:1022831‑M2/1‑95 (MQ=255)
                                                     gggCCTCATCACGCGCATAACCACGCCGGATGGCAGGGCATCGGCGTTTTACTATAACCACCACAACCAGTTAACGTCAGGCCCGGTGGCTGACGttaac                                                >  1:2951216‑M2/1‑95 (MQ=255)
                                                      ggCCTCATCACGCGCATAACCACGCCGGATGGCAGGGCATCGGCGTTTTACTATAACCACCACAACCAGTTAACGTCAGGCCCGGTGGCTGACGttaact                                               >  2:885461‑M2/1‑94 (MQ=255)
                                                       gCCTCATCACGCGCATAACCACGCCGGATGGCAGGGCATCGGCGTTTTACTATAACCACCACAACCAGTTAACGTCAGGCCCGGTGGCTGACGttaactg                                              >  2:641821‑M2/1‑93 (MQ=255)
                                                             gtggttatagtaaaacgccgatgccctgccatcCGGCGTTTTACTATAACCACCACAACCAGTTAACGTCAGCCACCGGGCCTGACGGGCTGGAATTgcg                                        >  2:2036447‑M2/34‑100 (MQ=255)
                                                              caCGCGCATAACCACGCCGGATGGCAGGGCATCGGCGTTTTACTATAACCACCACAACCAGTTAACGTCAGGCCCGGTGGCTGACGttaactggttgtgg                                       >  2:1949385‑M2/1‑86 (MQ=255)
                                                                  cgcATAACCACGCCGGATGGCAGGGCATCGGCGTggttatgcgcgtgatgaggcccgtcaccacatccgggctgtactctgttgtcctgcctgcggcatc                                    <  1:567845‑M2/100‑67 (MQ=255)
                                                                   atagtaaaacgccgatgccctgccatcCGGCGTTTTACTATAACCACCACAACCAGTTAACGTCAGCCACCGGGCCTGACGGGCTGGAATTGCGCCGGGa                                  >  2:907423‑M2/28‑100 (MQ=255)
                                                                   atagtaaaacgccgatgccctgccatcCGGCGTTTTACTATAACCACCACAACCAGTTAACGTCAGCCACCGGGCCTGACGGGCTGGAATTGCGCCGGGa                                  >  1:1576079‑M2/28‑100 (MQ=255)
                                                                    tagtaaaacgccgatgccctgccatcCGGCGTTTTACTATAACCACCACAGCCAGTTAACGTCAGCCACCGGGCCTGACGGGCTGGAAATACGCCGGGaa                                 >  1:2230448‑M2/27‑100 (MQ=255)
                                                                     agtaaaacgccgatgccctgccatcCGGCGTTTTACTATAACCACCACAACCAGTTAACGTCAGCCACCGGGCCTGACGGGCTGGAATTGCGCCGGGAat                                >  2:2013933‑M2/26‑100 (MQ=255)
                                                                      gtaaaacgccgatgccctgccatcCGGCGTTTTACTATAACCACCACAACCAGTTAACGTCAGCCACCGGGCCTGACGGGCTGGAATTGCGCCGGGAata                               >  2:259675‑M2/25‑100 (MQ=255)
                                                                      gtaaaacgccgatgccctgccatcCGGCGTTTTACTATAACCACCACAACCAGTTAACGTCAGCCACCGGGCCTGACGGGCTGGAATTGCGCCGGGAata                               >  2:531230‑M2/25‑100 (MQ=255)
                                                                      gtaaaacgccgatgccctgccatcCGGCGTTTTACTATAACCACCACAACCAGTTAACGTCAGCCACCGGGCCTGACGGGCTGGAATTGCACCGGGAata                               >  2:1734623‑M2/25‑100 (MQ=255)
                                                                      gtaaaacgccgatgacctgccatcCGGCGTTTTACTATCACCACCACAACCGGTTAACGTCAGCCACCGGGCCTGACGGGCTGGAATTGCGCCGGGAata                               >  2:1215872‑M2/25‑100 (MQ=255)
                                                                       taaaacgccgatgccctgccatcCGGCGTTTTACTATAACCACCACAACCAGTTAACGTCAGCCACCGGGCCTGACGGGCTGGAATTGCGCCGGGAatat                              >  2:779236‑M2/24‑100 (MQ=255)
                                                                        aaaacgccgatgccctgccatcCGGCGTTTTACTATAACCACCACAGCCAGTTAACGTCAGCCACCGGGCCTGACGGGCTGGAAATACGCCGGGAATatg                             >  2:1919207‑M2/23‑100 (MQ=255)
                                                                         ccACGCCGGATGGCAGGGCATCGGCGTggttatgcgcgtgatgaggcccgtcaccacatccgggctgtactctgttgtcctgcctgcggcatccgtctgt                             <  1:248089‑M2/100‑74 (MQ=255)
                                                                         ccACGCCAGATGGCAGGGCATCGGCGTggttatgcgcgtgatgaggcccgtcaccacatccgggctgtactctgttgtcctgcctgcggcatccgtctgt                             <  2:2722089‑M2/100‑74 (MQ=255)
                                                                         aaacgccgatgccctgccatcCGGCGTTTTACTATAACCACCACAACCAGTTAACGTCAGCCACCGGGCCTGACGGGCTGGAATTGCGCCGGGAATatga                            >  1:492285‑M2/22‑100 (MQ=255)
                                                                          cACGCCGGATGGCAGGGCATCGGCGTggttatgcgcgtgatgaggcccgtcaccacatccgggctgtactctgttgtcctgcctgcggcatccgtctgtg                            <  1:2034309‑M2/100‑75 (MQ=255)
                                                                          cACGCCGGATGGCAGGGCATCGGAGTggttatgcgcgtgatgaggcccgtcaccacatccgggctgtactctgttgtcctgcctgcggcatccgtctgtg                            <  1:114012‑M2/100‑75 (MQ=255)
                                                                          aacgccgatgccctgccatcCGGCGTTTTACTATAACCACCACAGCCAGTTAACGTCAGCCACCGGGCCTGACGGGCTGGAAATACGCCGGGAATatgat                           >  2:2383176‑M2/21‑100 (MQ=255)
                                                                          aacgccgatgccctgccatcCGGCGTTTTACTATAACCACCACACCCACTTAACGTCAGCCACCGGGCCTGCCGGGCTGGAAATACGCCGGGAATatgat                           >  1:1297384‑M2/21‑100 (MQ=255)
                                                                           acgccgatgccctgccatcCGGCGTTTTACTATAACCACCACAACCAGTTAACGTCAGCCACCGGGCCTGACGGGCTGGAATTGCGCCGGGAATatgatg                          >  1:846084‑M2/20‑100 (MQ=255)
                                                                                     gCAGGGCATCGGCGTggttatgcgcgtgatgaggcccgtgaccaaatacgggctgtactctgttgtcctgcctgcggcatccgtctgtgccctgagcctg                 <  2:2888980‑M2/100‑86 (MQ=255)
                                                                                            tcCGGCGTTTTACTATAACCACCACAACCAGTTAACGTCAGCCACCGGGCCTGACGGGCTGGAATTGCGCCGGGAATATGATGAATTGGGCCGTCTGAtt         <  2:492289‑M2/98‑1 (MQ=255)
                                                                                              cGGCGTggttatgcgcgtgatgaggcccgtcaccacatccgggctgtactctgttgtcctgcctgcggcatccgtctgtgccctgagcctgcccacggcg        >  1:1041970‑M2/1‑6 (MQ=255)
                                                                                              cGGCGTggttatgcgcgtgatgaggcccgtcaccacatccgggctgtactctgttgtcctgcctgcggcatccgtctgtgccctgagcctgcccacggcg        <  1:2895475‑M2/100‑95 (MQ=255)
                                                                                               ggCGTggttatgcgcgtgatgaggcccgtcaccacatccgggctgtactctgttgtcctgcctgcggcatccgtctgtgccctgagcctgcccacggcgt       >  2:1704970‑M2/1‑5 (MQ=255)
                                                                                               ggCGTggttatgcgcgtgatgaggcccgtcaccacatccgggctgtactctgttgtcctgcctgcggcatccgtctgtgccctgagcctgcccacggcgt       <  2:1085500‑M2/100‑96 (MQ=255)
                                                                                               GGCGTTTTACTATAACCACCACAACCAGTTAACGTCAGCCACCGGGCCTGACGGGCTGGAATTGCGCCGGGAATATGATGAATTGGGCCGTCTGATTCAg      <  1:1401284‑M2/100‑1 (MQ=255)
                                                                                               GGCGTTTTACTATAACCACCACAACCAGTTAACGTCAGCCACCGGGCCTGACGGGCTGGAATTGCGCCGGGAATATGATGAATTGGGCCGTCTGATTCAg      <  2:1314587‑M2/100‑1 (MQ=255)
                                                                                               GGCGTTTTACTATAACCACCACAACCAGTTAACGTCAGCCACCGGGCCTGACGGGCTGGAATTGCGCCGGGAATATGATGAATTGGGCCGTCTGATTCAg      >  2:526310‑M2/1‑100 (MQ=255)
                                                                                                gCGTggttatgcgcgtgatgaggcccgtcaccacatccgggctgtactctgttgtcctgcctgcggcatccgtctgtgccctgagcctgcccacggcgtc      <  2:925800‑M2/100‑97 (MQ=255)
                                                                                                gCGTggttatgcgcgtgatgaggcccgtcaccacatccgggctgtactctgttgtcctgcctgcggcatccgtctgtgccctgagcctgcccacggcgtc      >  1:1719825‑M2/1‑4 (MQ=255)
                                                                                                atcTTTTACTATAACCACCACAACCAGTTAACGTCAGCCACCGGGCCTGACGGGCTGGAATTGCGCCGGGAATATGATGAATTGGGCCGTCTGATTCAgg     <  2:2952676‑M2/97‑1 (MQ=255)
                                                                                                GCGTTTTACTATAACCACCACAACCAGTTAACGTCAGCCACCGGGCCTGACGGGCTGGAATTGCGCCGGGAATATGATGAATTGGGCCGTCTGATTCAgg     <  1:1088910‑M2/100‑1 (MQ=255)
                                                                                                GCGTTTTACTATAACCACCACAACCAGTTAACGTCAGCCACCGGGCCTGACGGGCTGGAATTGCGCCGGGAATATGATGAATTGGGCCGTCTGATTCAgg     <  2:2098988‑M2/100‑1 (MQ=255)
                                                                                                GCGTTTTACTATAACCACCACAACCAGTTAACGTCAGCCACCGGGCCTGACGGGCTGGAATTGCGCCGGGAATATGATGAATTGGGCCGTCTGATTCAgg     <  1:2655863‑M2/100‑1 (MQ=255)
                                                                                                GCGTTTTACTATAACCACCACAACCAGTTAACGTCAGCCACCGGGCCTGACGGGCTGGAATTGCGCCGGGAATATGATGAATTGGGCCGTCTGATTCAgg     <  1:2420077‑M2/100‑1 (MQ=255)
                                                                                                GCGTTTTACTATAACCACCACAACCAGTTAACGTCAGCCACCGGGCCTGACGGGCTGGAATTGCGCCGGGAATATGATGAATTGGGCCGTCTGATTCAgg     <  1:230347‑M2/100‑1 (MQ=255)
                                                                                                 cGTggttatgcgcgtgatgaggcccgtcaccacatccgggctgtactctgttgtcctgcctgcggcatccgtctgtgccctgagcctgcccacggcgtca     >  2:501477‑M2/1‑3 (MQ=255)
                                                                                                 CGTTTTACTATAACCACCACAACCAGTTAACGTCAGCCACCGGGCCTGACGGGCTGGAATTGCGCCGGGAATATGATGAATTGGGCCGTCTGATTCAGGa    <  1:2720430‑M2/100‑1 (MQ=255)
                                                                                                  gTggttatgcgcgtgatgaggcccgtcaccacatccgggctgtactctgttgtcctgcctgcggcatccgtctgtgccctgagcctgcccacggcgtcaa    >  2:1179507‑M2/1‑2 (MQ=255)
                                                                                                  GTTTTACTATAACCACCACAACCAGTTAGCGTCAGCCACCGGGCCTGACGGGCTGGAATTGCGCCGGGAATATGATGAATTGGGCCGTCTGATTCAGGaa   <  2:2138829‑M2/100‑1 (MQ=255)
                                                                                                  GTTTTACTATAACCACCACAACCAGTTAACGTCAGCCACCGGGCCTGACGGGCTGGAATTGCGCCGGGAATATGATGAATTGGGCCGTCTGATTCAGGaa   <  2:2635644‑M2/100‑1 (MQ=255)
                                                                                                  GTTTTACTATAACCACCACAACCAGTTAACGTCAGCCACCGGGCCTGACGGGCTGGAATTGCGCCGGGAATATGATGAATTGGGCCGTCTGATTCAGGaa   >  2:1470985‑M2/1‑100 (MQ=255)
                                                                                                   tggttatgcgcgtgatgaggcccgtcaccacatccgggctgtactctgttgtcctgcctgcggcatccgtctgtgccctgagcctgcccacggcgtcaaa   <  1:2950497‑M2/100‑100 (MQ=255)
                                                                                                   TTTTACTATAACCACCACAACCAGTTAACGTCAGCCACCGGGCCTGACGGGCTGGAATTGCGCCGGGAATATGATGAATTGGGCCGTCTGATTCAGGaaa  <  2:196492‑M2/100‑1 (MQ=255)
                                                                                                   TTTTACTATAACCACCACAACCAGTTAACGTCAGCCACCGGGCCTGACGGGCTGGAATTGCGCCGGGAATATGATGAATTGGGCCGTCTGATTCAGGaaa  <  1:844864‑M2/100‑1 (MQ=255)
                                                                                                   TTTTACTATAACCACCACAACCAGTTAACGTCAGCCACCGGGCCTGACGGGCTGGAATTGCGCCGGGAATATGATGAATTGGGCCGTCTGATTCAGGaaa  >  1:300544‑M2/1‑100 (MQ=255)
                                                                                                   |                                                                                                    
GCACAGACGGATGCCGCAGGCAGGACAACAGAGTACAGCCCGGATGTGGTGACGGGCCTCATCACGCGCATAACCACGCCGGATGGCAGGGCATCGGCGTTTTACTATAACCACCACAACCAGTTAACGTCAGCCACCGGGCCTGACGGGCTGGAATTGCGCCGGGAATATGATGAATTGGGCCGTCTGATTCAGGAAA  >  NC_000913/3620488‑3620686

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.