| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3765531 = | NA (NA) | 14 (0.130) | 3/168 | NT | 100% | coding (3349/4134 nt) | rhsA | Rhs protein with putative toxin 55 domain; putative polysaccharide synthesis/export protein; putative neighboring cell growth inhibitor |
| ? | NC_000913 | 3765547 = | 0 (0.000) | coding (3365/4134 nt) | rhsA | Rhs protein with putative toxin 55 domain; putative polysaccharide synthesis/export protein; putative neighboring cell growth inhibitor | |||||
TGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCT > NC_000913/3765448‑3765646 | gtcgcagtggtacaggtgggtttttcgcgccggcgtgtacaccgggtccatctggttttgcatctgctccacggtcaggccgcacgatgccagccagcgg > 2:1623436‑M2/100‑100 (MQ=255) tcgcagtggtacaggtggatttttcgcgccggcgtgtacaccgggtccatctggttttgcatctgctccacggtcaggccgcacgatgccagccagcggc < 2:150327‑M2/2‑1 (MQ=255) cgcagtggtacaggtggatttttcgcgccggcgtgtacaccgggtccatctggttttgcatctgctccacggtcaggccgcacgatgccagccagcggcg < 2:2202016‑M2/3‑1 (MQ=255) cgcagtggtacaggtggatttttcgcgccggcgtgtacaccgggtccatctggttttgcatctgctccacggtcaggccgcacgatgccagccagcggcg > 1:1397878‑M2/98‑100 (MQ=255) cgcagtggtacaggtggatttttcgcgccggcgtgtacaccgggtccatctggttttgcatctgctccacggtcaggccgcacgatgccagccagcggcg > 1:2283793‑M2/98‑100 (MQ=255) gcagtggtacaggtggatttttcgcgccggcgtgtacaccgggtccatctggttttgcatctgctccacggtcaggccgcacgatgccagccagcggcgg < 1:1253297‑M2/4‑1 (MQ=255) gcagtggtacaggtggatttttcgcgccggcgtgtacaccgggtccatctggttttgcatctgctccacggtcaggccgcacgatgccagccagcggcgg > 2:1230119‑M2/97‑100 (MQ=255) cagtggtacaggtggatttttcgcgccggcgtgtacaccgggtccatctggttttgcatctgctccacggtcaggccgcacgatgccagccagcggcggc < 1:669312‑M2/5‑1 (MQ=255) cagtggtacaggtggatttttcgcgccggcgtgtacaccgggtccatctggttttgcatctgctccacggtcaggccgcacgatgccagccagcggcggc < 2:117575‑M2/5‑1 (MQ=255) cagtggtacaggtggatttttcgcgccggcgtgtacaccgggtccatctggttttgcatctgctccacggtcaggccgcacgatgccagccagcggcggc > 2:670409‑M2/96‑100 (MQ=255) cagtggtacaggtggatttttcgcgccggcgtgtacaccgggtccatctggttttgcatctgctccacggtcaggccgcacgatgccagccagcggcggc < 1:1230113‑M2/5‑1 (MQ=255) cagtggtacaggtggatttttcgcgccggcgtgtacaccgggtccatctggttttgcatctgctccacggtcaggccacacgatgccagccagcggcggc < 2:485344‑M2/5‑1 (MQ=255) ccgtcaggccgcacgatgccagccagcgGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAACATCCACCTGt > 1:1109239‑M2/29‑100 (MQ=255) gtcaggccgcacgatgccagccagcgGCGGCCTGACCGTGGAGCAGATGAAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTAc > 2:333721‑M2/27‑100 (MQ=255) ggtcaggccgcacgatgccagccaGCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCa > 1:519644‑M2/25‑100 (MQ=255) caggccgcacgatgccagccagcgGCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCa > 1:1088781‑M2/25‑100 (MQ=255) ggccgcacgatgccagccagcgGCGGCCTGACGGTGGCGCAGATGCAAAGCCAGATGGACCCGGTATACACGCCGGCGCGAAAAATTCACCTGTACCACt > 2:1222123‑M2/23‑100 (MQ=255) ggccgcacgatgccagccagcgGCGGCCTGACGGTGGCGCAGATGCAAAGCCAGATGGACCCGGTATACACGCCGGCGCGAAAAATTCACCTGTACCACt > 2:756338‑M2/23‑100 (MQ=255) ggccgcacgatgccagccagcgGCGGCCTGACGGTGGCGCAGATGCAAAGCCAGATGGACCCGGTATACACGCCGGCGCGAAAAATTCACCTGTACCACt > 2:793547‑M2/23‑100 (MQ=255) ggccgcacgatgccagccagcgGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACt > 2:911830‑M2/23‑100 (MQ=255) ggccgcacgatgccagccagcgGCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACt > 2:109921‑M2/23‑100 (MQ=255) ggccgcacgatgccagccagcgGCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACt > 1:353202‑M2/23‑100 (MQ=255) ggccgcacgatgccagccagcgGCGGCCTGACCGTGGAGCAGATGAAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACt > 2:2751943‑M2/23‑100 (MQ=255) gccgcacgatgccagccagcgGCGGCCTGACGGTGGCGCAGATGCAAAGCCAGATGGACCCGGTATACACGCCGGCGCGAAAAATTCACCTGTACCACTg > 2:1799477‑M2/22‑100 (MQ=255) gccgcacgatgccagccagcgGCGGCCTGACCGTGGAGCAGATGAAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTg > 1:800549‑M2/22‑100 (MQ=255) ccagccagcgGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATcgcg > 2:2482135‑M2/11‑100 (MQ=255) cagcgGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTg < 1:2482121‑M2/95‑1 (MQ=255) GCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCt < 1:720258‑M2/100‑1 (MQ=255) | TGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCT > NC_000913/3765448‑3765646 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |