New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 4137789 =NA (NA)4 (0.040) 3/164 NT NA noncoding (1/98 nt) RIP307 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site RIP307 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
?NC_000913 4409183 = NA (NA)noncoding (31/98 nt) RIP331 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site RIP331 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site

Only 100 of 132 total aligned reads displayed.

GTGGCAGAGTGATCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGC  >  NC_000913/4409084‑4409280
                                                                                                   |                                                                                                 
  ggCAGAGTGATCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTa                                                                                                 >  2:956282/1‑100 (MQ=255)
  ggCAGAGTGATCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTa                                                                                                 >  2:231669/1‑100 (MQ=255)
  ggCAGAGTGATCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTa                                                                                                 <  1:112324/100‑1 (MQ=255)
   gCAGAGTGATCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTAc                                                                                                <  1:1285219/100‑1 (MQ=255)
   gCAGAGTGAACAATACCCTCTTTATAAGCAGAGGGTCAGATTGCTGACAAAATGCGCTTTGTTCCTGCCGGCTGTGGCGTGAACGCCTTATCCGGCCTAc                                                                                                >  1:1818597/1‑100 (MQ=21)
    cAGAGTGATCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACa                                                                                               >  2:852053/1‑100 (MQ=255)
    cAGAGTGATCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACa                                                                                               >  1:1286561/1‑100 (MQ=255)
    cAGAGTGATCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACa                                                                                               <  2:2936010/100‑1 (MQ=255)
    cAGAGTGATCAATACCCTCTTT‑AAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAt                                                                                              >  1:2000750/1‑100 (MQ=255)
      gagTGATCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATa                                                                                             >  1:665292/1‑100 (MQ=255)
      gagTGATCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATa                                                                                             >  1:768329/1‑100 (MQ=255)
       agTGATCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATaa                                                                                            <  2:740360/100‑1 (MQ=255)
          gATCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAACTGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCa                                                                                         >  1:878417/1‑100 (MQ=255)
          gATCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCa                                                                                         >  2:839389/1‑100 (MQ=255)
          gATCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCa                                                                                         <  2:491737/100‑1 (MQ=255)
          gATCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCa                                                                                         <  1:1876957/100‑1 (MQ=255)
          aaTCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCa                                                                                         >  2:2247549/2‑100 (MQ=255)
           aTCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCAc                                                                                        >  2:2042312/1‑100 (MQ=255)
           aTCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCAc                                                                                        <  1:2929922/100‑1 (MQ=255)
              aaTACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCa                                                                                     <  1:2913522/100‑1 (MQ=255)
              aaTACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCa                                                                                     >  2:46423/1‑100 (MQ=255)
              aaTACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCa                                                                                     >  2:1966931/1‑100 (MQ=255)
              aaTACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCa                                                                                     <  1:30595/100‑1 (MQ=255)
               aTACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCaa                                                                                    >  2:859819/1‑100 (MQ=255)
               aTACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCaa                                                                                    >  1:1729775/1‑100 (MQ=255)
                 aCCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAAt                                                                                  >  2:1765305/1‑100 (MQ=255)
                  cccTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAAtt                                                                                 >  2:1305366/1‑100 (MQ=255)
                  cccTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAAt                                                                                  >  1:1747545/1‑99 (MQ=255)
                   ccTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTc                                                                                >  2:1289280/1‑100 (MQ=255)
                    ctctTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCa                                                                               >  1:2095166/1‑100 (MQ=255)
                      ctTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAat                                                                             <  2:1125024/100‑1 (MQ=255)
                      ctTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAat                                                                             <  1:1994738/100‑1 (MQ=255)
                       tttAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAata                                                                            <  1:130679/100‑1 (MQ=255)
                          aaaaGAAGAGGGTTAGATTGCTTACAAAATGCGCTTTTTTCATGCCGTATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAatatat                                                                         <  1:2060063/100‑1 (MQ=255)
                          aaaaGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAatatat                                                                         >  1:2768077/1‑100 (MQ=255)
                          aaaaGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAatatat                                                                         <  1:1088620/100‑1 (MQ=255)
                           aaaGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATAtt                                                                        >  2:1914691/1‑100 (MQ=255)
                               aagaGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCag                                                                    <  2:1282463/100‑1 (MQ=255)
                               aagaGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCag                                                                    <  1:71250/100‑1 (MQ=255)
                               aagaGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATACCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCag                                                                    <  1:2593213/100‑1 (MQ=255)
                                agagGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCaga                                                                   >  1:1458558/1‑100 (MQ=255)
                                agagGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCaga                                                                   <  2:665297/100‑1 (MQ=255)
                                  agGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAgaga                                                                 <  2:75785/100‑1 (MQ=255)
                                   gggTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGAt                                                                >  1:1147477/1‑100 (MQ=255)
                                   gggTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGAt                                                                >  1:955665/1‑100 (MQ=255)
                                    ggTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGATc                                                               <  1:2621348/100‑1 (MQ=255)
                                    ggTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGATc                                                               <  2:1532193/100‑1 (MQ=255)
                                     gTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGATCa                                                              <  1:1070300/100‑1 (MQ=255)
                                     gTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGATCa                                                              <  1:2634821/100‑1 (MQ=255)
                                       tAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGATCATg                                                            <  1:1906895/100‑1 (MQ=255)
                                           ttGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGATCATGTAgg                                                        >  1:1740202/1‑100 (MQ=255)
                                             gCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGcc                                                      <  1:1643582/100‑1 (MQ=255)
                                             gCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGcc                                                      <  1:2280483/100‑1 (MQ=255)
                                             ccgatctaaaTGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGcc                                                      <  2:2666470/93‑1 (MQ=255)
                                              cTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAACTTCAATATATTGCAGAGATCATGTAGGCCg                                                     >  1:949384/1‑100 (MQ=255)
                                               tGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGCCgg                                                    <  2:2458199/100‑1 (MQ=255)
                                               tGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGCCgg                                                    <  2:938949/100‑1 (MQ=255)
                                               tGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGCCgg                                                    <  2:1487203/100‑1 (MQ=255)
                                                 aCAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGCCGGAt                                                  <  1:817004/100‑1 (MQ=255)
                                                 aCAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGCCGGAt                                                  <  2:647554/100‑1 (MQ=255)
                                                  cAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATa                                                 <  2:2984070/100‑1 (MQ=255)
                                                    aaaTGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATaaa                                               <  1:2772493/100‑1 (MQ=255)
                                                    aaaTGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGCCAGAtcgg                                               >  1:2666455/1‑97 (MQ=255)
                                                      tgcgtgattatgtaggccggataaggcgttcacgccgcatccggcATACATAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACg                                             >  1:2841919‑M2/46‑100 (MQ=255)
                                                      aTGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACg                                             <  2:2107020/100‑1 (MQ=255)
                                                      aTGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAGAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACg                                             <  1:1251728/100‑1 (MQ=255)
                                                        gcgcTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTa                                           <  1:891238/100‑1 (MQ=255)
                                                         gtgattatgtaggccggataaggcgttcacgccgcatccggcCTACATAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAg                                          >  1:3622‑M2/43‑100 (MQ=255)
                                                         cgcTTTGTTCATGCCGGATGTGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAg                                          <  1:1825382/100‑1 (MQ=255)
                                                         cgcTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAg                                          >  2:2541926/1‑100 (MQ=255)
                                                         cgcTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAg                                          <  2:2764392/100‑1 (MQ=255)
                                                         cgcTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAg                                          <  2:609405/100‑1 (MQ=255)
                                                          gcTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGt                                         <  2:952007/100‑1 (MQ=255)
                                                           cTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTg                                        <  1:355211/100‑1 (MQ=255)
                                                             ttGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCa                                      <  1:1389961/100‑1 (MQ=255)
                                                              tGTTTATGCCAGATGCGGCGTAAACGCCTTATCCGGCCTACAAATTCTTCCAAATTCAATATATTGCAGAAATCATGTAGGCCTGATaaagatcggaaga                                     >  2:2662108/1‑90 (MQ=18)
                                                                 gtaggccggataaggcgttcacgccgcatccggcCTACATAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAg                                  >  2:76461‑M2/35‑100 (MQ=255)
                                                                  cATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAgg                                 >  2:404319/1‑100 (MQ=255)
                                                                  cATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAgg                                 <  2:1481041/100‑1 (MQ=255)
                                                                  cATGCCGGATGCGGCGTGAACGCCTTAATCGGCCTACATAATCACGCAAATCCAATCTATTTCAGAGATCATGGAGGCCGGATAAACGTAGTGCATCAgn                                 <  1:2555037/100‑2 (MQ=17)
                                                                     gCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCCTCAGGCaa                              >  2:237123/1‑100 (MQ=255)
                                                                      ccGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCaaa                             >  2:1655948/1‑100 (MQ=255)
                                                                        ggataaggcgttcacgccgcatccggcCTACATAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAAc                           >  1:2032700‑M2/28‑100 (MQ=255)
                                                                        ggATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAAc                           <  1:2053361/100‑1 (MQ=255)
                                                                           tGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTa                        <  1:387074/100‑1 (MQ=255)
                                                                             cggcgTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTaaa                      >  2:333942/1‑100 (MQ=255)
                                                                              ggcgTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAaac                     <  2:1778950/100‑1 (MQ=255)
                                                                                cgTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAaacaa                   >  1:2186871/1‑100 (MQ=255)
                                                                                cgTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAaacaa                   >  2:1085963/1‑100 (MQ=255)
                                                                                  tGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACg                 <  1:50246/100‑1 (MQ=255)
                                                                                   gAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGa                >  1:1964455/1‑100 (MQ=255)
                                                                                    aaCGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAg               <  1:404753/100‑1 (MQ=255)
                                                                                    aaCGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAg               <  1:2234038/100‑1 (MQ=255)
                                                                                        ccTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTa             <  1:1860958/98‑1 (MQ=255)
                                                                                        ccTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACa           <  2:1147483/100‑1 (MQ=255)
                                                                                        ccTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACa           >  1:2722395/1‑100 (MQ=255)
                                                                                               cggcCTACATAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGa    >  1:2563021‑M2/5‑100 (MQ=255)
                                                                                               cggcCTACATAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGa    <  1:859814‑M2/96‑1 (MQ=255)
                                                                                                 gcCTACATAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGCCGTATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGc  <  1:984305‑M2/98‑1 (MQ=255)
                                                                                                 gcCTACATAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGc  <  2:2186884‑M2/98‑1 (MQ=255)
                                                                                                   |                                                                                                 
GTGGCAGAGTGATCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGC  >  NC_000913/4409084‑4409280

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.