New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 4636809101 (0.890)5 (0.050) 5/164 NT 4.7% coding (114/1425 nt) creC sensory histidine kinase in two‑component regulatory system with CreB or PhoB
?NC_000913 = 4636834 108 (1.040)coding (139/1425 nt) creC sensory histidine kinase in two‑component regulatory system with CreB or PhoB
Rejected: Frequency below cutoff threshold.

Only 100 of 130 total aligned reads displayed.

CTGGTGGCGGTGGCAGCCTGGTTCGTACTGGCCATTTTTGTCAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTC  >  NC_000913/4636735‑4636933
                                                                                                   |                                                                                                   
cTGGTGGCGGTGGCAGCCTGGTTCGTACTGGCCATTTTTGTCAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCaa                                                                                                     >  2:1510935/1‑100 (MQ=255)
cTGGTGGCGGTGGCAGCCTGGTTCGTACTGGCCATTTTTGTCAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCaa                                                                                                     >  1:737846/1‑100 (MQ=255)
cTGGTGGCGGTGGCAGCCTGGTTCGTACTGGCCATTTTTGTCAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACGGAGGCGACGTTGATCGACACCGCaa                                                                                                     >  1:1467505/1‑100 (MQ=255)
       cggtggcCGCCTGGTTCGTACAAACCATTTTTGTCAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAAcgttgct                                                                                              <  1:838525‑M2/100‑8 (MQ=255)
       cggtggcAGCCTGGTTCGTACTGGCCATTTTTGTCAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAAcgttgct                                                                                              <  2:2734063‑M2/100‑8 (MQ=255)
        ggtggcAGCCTGGTTCGTACTGGCCATTTTTGTCGAAGAAGTTAAGCCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAAcgttgct                                                                                              >  1:68579‑M2/1‑92 (MQ=255)
        ggtggcAGCCTGGTTCGTACTGGCCATTTTTGTCAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTg                                                                                             <  2:2302308/100‑1 (MQ=255)
          tggcAGCCTGGTTCGTACTGGCCATTTTTGTCAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGc                                                                                           <  2:269097/100‑1 (MQ=255)
           ggcAGCCTGGTTCGTACTGGCCATTTTTGTCAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCg                                                                                          <  2:1461189/100‑1 (MQ=255)
            gcAGCCTGGTTCGTACTGGCCATTTTTGTCAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCgg                                                                                         <  1:1657239/100‑1 (MQ=255)
             cAGCCTGGTTCGTACTGGCCATTTTTGTCAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGa                                                                                        >  2:904352/1‑100 (MQ=255)
             cAGCCTGGTTCGTACTGGCCATTTTTGTCAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGa                                                                                        >  2:1780265/1‑100 (MQ=255)
             cAGCCTGGTTCGTACTGGCCATTTTTGTCAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGa                                                                                        >  1:1660960/1‑100 (MQ=255)
               gCCTGGTTCGTACTGGCCATTTTTTTTTTTTTTTTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGc                                                                                      >  1:425041/1‑100 (MQ=255)
               gCCTGGTTCGTACTGGCCATTTTTGTCAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGc                                                                                      >  2:1511295/1‑100 (MQ=255)
                ccTGGTTCTTACTGGCCATTTTTGTCAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCt                                                                                     <  1:2490907/100‑1 (MQ=255)
                ccTGGTTCGTACTGGCCATTTTTGTCAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCt                                                                                     >  1:397624/1‑100 (MQ=255)
                  tGGTTCGTACTGGCCATTTTTGTCAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTgg                                                                                   >  2:65780/1‑100 (MQ=255)
                   ggTTCGTACTGGCCATTTTTTTTTTTTTTTTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGgc                                                                                  >  1:2689567/1‑100 (MQ=255)
                    gTTCGTACTGGCCATTTTTGTCAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGgcg                                                                                 <  2:1262877/100‑1 (MQ=255)
                    gTTCGTACTGGCCATTTTTGTCAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGgcg                                                                                 >  2:334739/1‑100 (MQ=255)
                     ttCGTACTGGCCATTTTTGTCAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGgcgc                                                                                <  2:67493/100‑1 (MQ=255)
                      tCGTACTGGCCATTTTTGTCAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGcgcg                                                                               <  1:927527/100‑1 (MQ=255)
                        gTACTGGCCATTTTTGTCAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTc                                                                             <  2:13675/100‑1 (MQ=255)
                          aCTGGCCATTTTTGTCAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTccc                                                                           >  1:53177/1‑100 (MQ=255)
                          aCTGGCCATTTTTGTCAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTccc                                                                           <  2:1854056/100‑1 (MQ=255)
                             ggCCATTTTTGTCAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGAt                                                                        <  1:2212892/100‑1 (MQ=255)
                             ggCCATTTTTGTCAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGAt                                                                        >  1:2287783/1‑100 (MQ=255)
                              gCCATTTTTGTCAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGAtt                                                                       >  2:1202441/1‑100 (MQ=255)
                               ccATTTTTGTCAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGAttt                                                                      <  1:583977/100‑1 (MQ=255)
                                cATTTTTGTCAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTg                                                                     >  2:2771267/1‑100 (MQ=255)
                                 aTTTTTGTCAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGc                                                                    <  2:15545/100‑1 (MQ=255)
                                     ttGTCAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGctctc                                                                <  2:2532814/100‑1 (MQ=255)
                                     ttGTCAAAAAAATTAAACCAGCCGTGAGAAGAGCAACGTAGAGCACGTTGATCGACCCCGCAACGTTTCTGGCGGAGCTGGCGCGTCCCGATTTGctctc                                                                <  1:2264359/100‑1 (MQ=255)
                                      tGTCAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGctctct                                                               >  2:705545/1‑100 (MQ=255)
                                       gTCAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTg                                                              >  1:1999441/1‑100 (MQ=255)
                                         cAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTggg                                                            >  2:1542903/1‑100 (MQ=255)
                                         cAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTggg                                                            <  1:1570472/100‑1 (MQ=255)
                                         cAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTggg                                                            >  2:697706/1‑100 (MQ=255)
                                          aaaGAAGTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTgggg                                                           >  2:1834922/1‑100 (MQ=255)
                                            agaagTTAAACCGGGCGTGCGAGGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGa                                                          <  1:2030260/99‑1 (MQ=255)
                                            agaagTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGAc                                                         <  1:904347/100‑1 (MQ=255)
                                               agTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCa                                                      >  2:2743156/1‑100 (MQ=255)
                                               agTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCa                                                      >  1:2209381/1‑100 (MQ=255)
                                               agTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCa                                                      >  2:2007775/1‑100 (MQ=255)
                                                gTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCaa                                                     >  1:2328856/1‑100 (MQ=255)
                                                gTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCaa                                                     >  2:3012531/1‑100 (MQ=255)
                                                 ttAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAAc                                                    <  2:2184556/100‑1 (MQ=255)
                                                  tAAACCGGGCGTGCGAAGAGCAGCGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACg                                                   >  1:1775498/1‑100 (MQ=255)
                                                  tAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACg                                                   >  2:2510172/1‑100 (MQ=255)
                                                  tAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACg                                                   >  2:844989/1‑100 (MQ=255)
                                                   aaaCCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGc                                                  >  1:2584667/1‑100 (MQ=255)
                                                    aaCCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGc                                                  >  1:2347993/1‑99 (MQ=255)
                                                     aCCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCAt                                                >  2:588353/1‑100 (MQ=255)
                                                     aCCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCAt                                                <  2:1595941/100‑1 (MQ=255)
                                                       cGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATgg                                              >  1:1290250/1‑100 (MQ=255)
                                                       cGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATgg                                              >  1:2718607/1‑100 (MQ=255)
                                                             tGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACt                                        <  2:2276360/100‑1 (MQ=255)
                                                              gCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAAcgttgctcttcgcacgcccggtttaacttctttgacaaaaatggccagtacgaaccaggctg                                       <  1:1179275‑M2/100‑63 (MQ=255)
                                                               cGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAAcgttgctcttcgcacgcccggtttaacttctttgacaaaaatggccagtacgaaccaggctgc                                      <  2:241878‑M2/100‑64 (MQ=255)
                                                               cGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTgg                                      <  1:1506314/100‑1 (MQ=255)
                                                               cGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTgg                                      <  1:2565096/100‑1 (MQ=255)
                                                                gAAGAGCAACGGAGGGGACGTTGATCGACACCGCAAcgttgctcttcgcacgcccggtttaacttctttgacaaaaatggccagtacgaaccaggctgcc                                     <  2:2834837‑M2/100‑65 (MQ=255)
                                                                  agagCAACGGAGGGGACGTTGATCGACACCGCAAcgttgctcttcgcacgcccggtttaacttctttgacaaaaatggccagtacgaaccaggctgccac                                   <  2:371718‑M2/100‑67 (MQ=255)
                                                                  agagCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGgcgc                                   <  1:2771251/100‑1 (MQ=255)
                                                                   gagCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGCTTTGCTCTCTGGGGACCCAACGCATGGGCAACTGgcgc                                   <  1:692719/99‑1 (MQ=255)
                                                                   gagCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCa                                  <  2:1564225/100‑1 (MQ=255)
                                                                   gagCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCa                                  >  2:756261/1‑100 (MQ=255)
                                                                    agCAACGGAGGGGACGTTGATCGACACCGCAAcgttgctcttcgcacgcccggtttaacttctttgacaaaaatggccagtacgaaccaggctgccaccg                                 <  1:1214213‑M2/100‑69 (MQ=255)
                                                                    agCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAg                                 <  2:557640/100‑1 (MQ=255)
                                                                     gCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAgg                                <  2:835527/100‑1 (MQ=255)
                                                                       aaCGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCg                              >  2:2672338/1‑100 (MQ=255)
                                                                         cGGAGGGGACGTGGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGtt                            <  1:373148/100‑1 (MQ=255)
                                                                          ggAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGttt                           <  1:1422560/100‑1 (MQ=255)
                                                                           gAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGttga                          <  2:2075456/100‑3 (MQ=255)
                                                                            aGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTaa                         >  2:1853512/1‑100 (MQ=255)
                                                                            aGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTaa                         <  1:1284388/100‑1 (MQ=255)
                                                                              gggACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATc                       <  2:2984000/100‑1 (MQ=255)
                                                                                gACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAg                     <  1:649285/100‑1 (MQ=255)
                                                                                 aCGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGc                    <  2:3044062/100‑1 (MQ=255)
                                                                                 aCGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGc                    <  1:807868/100‑1 (MQ=255)
                                                                                 aCGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGc                    <  2:295470/100‑1 (MQ=255)
                                                                                    ttGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGGCCGGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTac                 <  1:1009177/100‑1 (MQ=255)
                                                                                     tGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTaca                >  1:1169832/1‑100 (MQ=255)
                                                                                      gATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTacaa               >  2:2260507/1‑100 (MQ=255)
                                                                                       aTCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTacaac              >  2:2815572/1‑100 (MQ=255)
                                                                                        tctacacCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTacaaca             <  2:2181796/97‑1 (MQ=255)
                                                                                         cGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACAt            >  2:2048479/1‑100 (MQ=255)
                                                                                          gACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGATCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATc           >  1:439222/1‑100 (MQ=255)
                                                                                           acacCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCGACTGGCGCAGGCGTTTAATCAGCTACAACATCg          <  1:2010335/100‑1 (MQ=255)
                                                                                           acacCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTacaacaaga          >  1:2181783/1‑97 (MQ=255)
                                                                                            cacCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGc         <  2:1266713/100‑1 (MQ=255)
                                                                                            cacCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGc         >  2:1526666/1‑100 (MQ=255)
                                                                                             acCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGcc        <  2:221300/100‑1 (MQ=255)
                                                                                             acCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGcc        <  2:2289370/100‑1 (MQ=255)
                                                                                             acCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGcc        <  1:1308843/100‑1 (MQ=255)
                                                                                                 naaCGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGtt    >  2:167608/2‑100 (MQ=255)
                                                                                                   aCGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTc  <  2:1343683/100‑1 (MQ=255)
                                                                                                   aCGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTc  <  2:1736886/100‑1 (MQ=255)
                                                                                                   aCGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTc  >  2:1711706/1‑100 (MQ=255)
                                                                                                   |                                                                                                   
CTGGTGGCGGTGGCAGCCTGGTTCGTACTGGCCATTTTTGTCAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTC  >  NC_000913/4636735‑4636933

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.