New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	381292 =	NA (NA)	13 (0.130)	17/160	NT	NA	noncoding (33/1331 nt)	IS2	repeat region
	?	NC_000913	381312 =	NA (NA)					noncoding (53/1331 nt)	IS2	repeat region

TACGCCATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGAT  >  NC_000913/381213‑381355                                                                                                    |                                            tACGCCATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAg                                             <  1:36587/100‑1 (MQ=255) tACGCCATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAg                                             <  1:2225485/100‑1 (MQ=255)  aCGCCATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGt                                            >  2:1761757/1‑100 (MQ=255)   cGCCATTGCTGATTATTGTGTCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTc                                           >  2:2720588/1‑100 (MQ=255)     ccATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCTCCCTGAATCTCCAGCCAACCACTATCACTTAAATACGTGATATTCtt                                         >  1:759240/1‑100 (MQ=255)     ccATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACAGGCACCATGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCtt                                         <  1:1672202/100‑1 (MQ=255)      cATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTa                                        >  2:2341106/1‑100 (MQ=255)       aTTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGTCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTaa                                       <  1:2029605/100‑1 (MQ=255)        ttGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAAt                                      <  1:1699639/100‑1 (MQ=255)        ttGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAAt                                      <  2:2935540/100‑1 (MQ=255)         tGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCTCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAAt                                      <  1:1518859/99‑1 (MQ=255)         tGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATa                                     <  1:365794/100‑1 (MQ=255)           cTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACt                                   <  1:1065177/100‑1 (MQ=255)             gATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAg                                 <  2:2724151/100‑1 (MQ=255)                  ttGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGttttt                            <  2:288673/100‑1 (MQ=255)                  ttGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGttttt                            <  2:2003864/100‑1 (MQ=255)                   tgtgCCAGGACGAATGAACGCATAATTACTAGACTGGCGCCCTGAATCTGCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTa                           <  1:548362/100‑1 (MQ=255)                   tgtgCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTa                           >  1:203712/1‑100 (MQ=255)                   tgtgCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTa                           <  2:2337217/100‑1 (MQ=255)                    gtgCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAg                          >  2:2490501/1‑100 (MQ=255)                    gtgCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAg                          <  1:2429915/100‑1 (MQ=255)                    gtgCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAg                          <  2:1734674/100‑1 (MQ=255)                    gtgCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAg                          <  2:497431/100‑1 (MQ=255)                    gtgCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAg                          <  2:984744/100‑1 (MQ=255)                     tgCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTa                           <  1:3034660/98‑1 (MQ=255)                     tgCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGa                         >  2:2258003/1‑100 (MQ=255)                      gCCAGGACGAATAAACGCATAATTACTAGACTGGTCCCATGTATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAg                          <  1:1982077/98‑1 (MQ=255)                      gCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGAc                        >  1:494109/1‑100 (MQ=255)                      gCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGAc                        >  1:1600242/1‑100 (MQ=255)                      gCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGAc                        <  1:808299/100‑1 (MQ=255)                       ccAGGACGAATAAACGCATAATTACTAGACTGTCCCTCTGAATTTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACt                       <  1:510740/100‑1 (MQ=255)                       ccAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACt                       >  1:2381230/1‑100 (MQ=255)                        cAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTa                      >  2:1278918/1‑100 (MQ=255)                         aGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAg                     <  2:1831735/100‑1 (MQ=255)                            aCGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCa                  >  2:632974/1‑100 (MQ=255)                            aCGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAACACTAGTTTTTAGACTAGTCa                  >  2:2461175/1‑100 (MQ=255)                             cGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCAt                 >  2:2607108/1‑100 (MQ=255)                             cGAATAAACGCATAATTACTAGACTGGCCCCATGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCAt                 >  1:128183/1‑100 (MQ=255)                              gAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCAtt                <  2:1654745/100‑1 (MQ=255)                                aTAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTgg              <  2:2199492/100‑1 (MQ=255)                                aTAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTgg              <  1:1558233/100‑1 (MQ=255)                                 tAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAGTACTAGTTTTTAGACTAGTCATTGga             >  1:576382/1‑100 (MQ=255)                                 tAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGga             <  1:2039786/100‑1 (MQ=255)                                 tAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAATCATTGga             >  1:2339184/1‑100 (MQ=255)                                 tAAACGCATAATTACTAGACTGGCAACCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGga             <  1:270814/100‑1 (MQ=255)                                  aaaCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCTCTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGgag            <  1:452594/100‑1 (MQ=255)                                  aaaCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGgag            <  1:1512071/100‑1 (MQ=255)                                  aaaCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGgag            <  1:36919/100‑1 (MQ=255)                                   aaCGCATAATTACTAGACTGGCCCCCTGAATCTCCATACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGgag            <  1:264874/99‑1 (MQ=255)                                   aaCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGgaga           >  2:1271596/1‑100 (MQ=255)                                    ncGCATAATTACGAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGAAAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGaa          >  2:2007267/2‑100 (MQ=255)                                       cATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAg       >  1:2344060/1‑100 (MQ=38)                                       cATAATTACTACACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTAAATACTAGTTTTTAGACTAGTCATTGGAGAACAg       >  1:1611795/1‑100 (MQ=255)                                        aTAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAga      >  1:697137/1‑100 (MQ=35)                                          aaTTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAgatg    >  2:2660846/1‑100 (MQ=33)                                            ttACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAgatgat  >  2:2670029/1‑100 (MQ=31)                                                                                                    |                                            TACGCCATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGAT  >  NC_000913/381213‑381355

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.