BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	409056 =	NA (NA)	5 (0.050)	3/164	NT	NA	noncoding (5/37 nt)	REP34 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP34 (repetitive extragenic palindromic) element; contains 1 REP sequences
*	?	NC_000913	409089 =	NA (NA)	5 (0.050)	3/164	NT	NA	intergenic (+139/+19)	ykiA/rdgC	pseudogene/nucleoid‑associated ssDNA and dsDNA binding protein; competitive inhibitor of RecA function

Only 100 of 133 total aligned reads displayed.

ATATTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAGGTTTTGAATTAACGCTGCCAGTTCACCAGTCATCAGGATGAAATC  >  NC_000913/408990‑409188

atatTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCa                                                                                                     <  2:2210248/100‑1 (MQ=255)

  attcaaaacctgattgaaggattaggtggcgaagcacaacgttaattgctgattttcctttaatGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCAtt                                                                                                   >  2:585245‑M1/65‑100 (MQ=255)

  atTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCAt                                                                                                    <  2:1557622/99‑1 (MQ=255)

     gctgcGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTaaa                                                                                                >  1:696518/1‑100 (MQ=255)

     gctgcGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTaaa                                                                                                >  1:710399/1‑100 (MQ=255)

     actacggtAAAAATTATAACTCGCCGTAGCGAATAACTATATGCAAGGTTTGGCTTCATACACCGGATAAGACGCCGCAGGCGTCCCCTCCGGCATTaaa                                                                                                >  1:749914/8‑100 (MQ=255)

      ctgcGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCCTCCGGCATTAAAg                                                                                               <  2:2070635/100‑1 (MQ=255)

      ctgcGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAg                                                                                               <  2:829904/100‑1 (MQ=255)

      ctgcGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAg                                                                                               >  2:424776/1‑100 (MQ=255)

      ctgcGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAg                                                                                               <  2:1062246/100‑1 (MQ=255)

      ctgcGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAg                                                                                               <  2:151369/100‑1 (MQ=255)

      aaaacctgattgaaggattaggtggcgaagcacaacgttaattgctgattttcctttaatGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAg                                                                                               >  2:667387‑M1/61‑100 (MQ=255)

      aaaacctgattgaaggattaggtggcgaagcacaacgttaattgctgattttcctttaatGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAg                                                                                               >  2:2027610‑M1/61‑100 (MQ=255)

       tgcGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAgg                                                                                              <  1:360287/100‑1 (MQ=255)

        gcgcTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGa                                                                                             >  1:2304626/1‑100 (MQ=255)

           cTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGaaaa                                                                                          >  2:287833/1‑100 (MQ=255)

            tAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAAt                                                                                         >  2:2084769/1‑100 (MQ=255)

            tAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAAt                                                                                         <  2:1045615/100‑1 (MQ=255)

            tAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAAt                                                                                         <  2:480340/100‑1 (MQ=255)

             aaaatTTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATc                                                                                        <  2:2591836/100‑1 (MQ=255)

             aaaaaTTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATc                                                                                        <  1:2168410/100‑1 (MQ=255)

             aaaaaTTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATc                                                                                        >  1:62526/1‑100 (MQ=255)

             aaaaaTTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATc                                                                                        <  1:2912525/100‑1 (MQ=255)

               aaaTTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAg                                                                                      >  2:176246/1‑100 (MQ=255)

               aaaTTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAg                                                                                      >  1:1329709/1‑100 (MQ=255)

                aaTTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGc                                                                                     <  2:1943311/100‑1 (MQ=255)

                aaTTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGc                                                                                     <  2:69829/100‑1 (MQ=255)

                aaTTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGc                                                                                     <  2:1335598/100‑1 (MQ=255)

                 attattGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCa                                                                                    <  1:2536860/100‑1 (MQ=255)

                   tattGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAAt                                                                                  >  2:2637477/1‑100 (MQ=255)

                        cTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAAc                                                                              >  2:975887/1‑99 (MQ=255)

                        cTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACg                                                                             >  2:604820/1‑100 (MQ=255)

                           gCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACg                                                                             <  2:2113254/97‑1 (MQ=255)

                            ccGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTtgt                                                                         >  2:9718/1‑100 (MQ=255)

                                 gCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTc                                                                    >  1:1919464/1‑100 (MQ=255)

                                 gCGAATAATTATATGCCCGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTc                                                                    <  1:2793721/100‑1 (MQ=255)

                                   gAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTGGCTTCCGCCCTTCATGGTAAAGCAACACTTAACGTTGTGTTTccc                                                                  >  1:2229351/1‑98 (MQ=255)

                                   gAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGc                                                                  >  2:527869/1‑100 (MQ=255)

                                    aataatTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGcc                                                                 <  2:1395273/100‑1 (MQ=255)

                                      taatTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCAc                                                               >  2:2291037/1‑100 (MQ=255)

                                       aatTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCAcc                                                              <  2:748893/100‑1 (MQ=255)

                                       aatTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCAcc                                                              >  1:1592624/1‑100 (MQ=255)

                                               gCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCtt                                                      >  2:2256332/1‑100 (MQ=255)

                                                ccTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTc                                                     <  2:62527/100‑1 (MQ=255)

                                                   ggTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAAt                                                  >  1:2841302/1‑100 (MQ=255)

                                                   ggTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAAt                                                  >  2:1778528/1‑100 (MQ=255)

                                                    gtgtGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATc                                                 <  1:2249268/100‑1 (MQ=255)

                                                     tgtgGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCa                                                >  1:2560730/1‑100 (MQ=255)

                                                       tgGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAgg                                              <  1:3021388/100‑1 (MQ=255)

                                                        ggCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAGGt                                             >  1:45863/1‑100 (MQ=255)

                                                        ggCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAGGt                                             <  1:1899066/100‑1 (MQ=255)

                                                           ttCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAGGtttt                                          <  1:1793583/100‑1 (MQ=255)

                                                           ctttaatgccggatgcgacgcctgccgcgtcttatccggcATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAGGtttt                                          >  2:667387‑M2/41‑100 (MQ=255)

                                                           ctttaatgccggatgcgacgcctgccgcgtcttatccggcATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAGGtttt                                          >  2:268042‑M2/41‑100 (MQ=255)

                                                           ctttaatgccggatgcgacgcctgccgcgtcttatccggcATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAGGtttt                                          >  2:2027610‑M2/41‑100 (MQ=255)

                                                            tCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAGGTTTTg                                         <  1:518688/100‑1 (MQ=255)

                                                             cGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAGGTTTTGa                                        >  2:802670/1‑100 (MQ=255)

                                                             cGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAGGTTTTGa                                        <  1:527865/100‑1 (MQ=255)

                                                             cGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAGGTTTTGa                                        >  2:802465/1‑100 (MQ=255)

                                                             cGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCGTCAATCAGGTTTTGa                                        <  1:876581/100‑1 (MQ=255)

                                                              gTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAGGTTTTGaa                                       <  1:1108790/100‑1 (MQ=255)

                                                              gTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAGGTTTTGaa                                       <  2:2707209/100‑1 (MQ=255)

                                                              gTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAGGTTTTGaa                                       >  2:694705/1‑100 (MQ=255)

                                                              gTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAGGCTTTGaa                                       >  2:425777/1‑100 (MQ=255)

                                                               tACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAGGTTTTGAAt                                      <  2:2099821/100‑1 (MQ=255)

                                                               tACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAGGTTTTGAAt                                      >  2:1146831/1‑100 (MQ=255)

                                                                aCGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAGGTTTTGAAtt                                     <  2:2815551/100‑1 (MQ=255)

                                                                 cGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAGGTTTTGAATTa                                    >  2:1767080/1‑100 (MQ=255)

                                                                   CCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAGGTTTTGAATTAAc                                  <  2:2589148‑M1/100‑1 (MQ=255)

                                                                   CCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAGGTTTTGAATTAAc                                  <  2:322071‑M1/100‑1 (MQ=255)

                                                                       ATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAGGTTTTGAATTAACGCTg                              >  1:2647344‑M1/1‑100 (MQ=255)

                                                                        TAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGATAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAGGTTTTGAATTAACGCTGc                             <  2:2150614‑M1/100‑1 (MQ=255)

                                                                         aaGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAGGTTTTGAATTAACGCTGcc                            <  1:1274708/100‑1 (MQ=255)

                                                                          aGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAGGTTTTGAATTAACGCTGCCa                           >  2:597056/1‑100 (MQ=255)

                                                                          aGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAGGTTTTGAATTAACGCTGCCa                           >  1:41113/1‑100 (MQ=255)

                                                                          aGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAGGTTTTGAATTAACGCTGCCa                           >  1:1616067/1‑100 (MQ=255)

                                                                           gACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAGGTTTTGAATTAACGCTGCCAg                          >  1:1019561/1‑100 (MQ=255)

                                                                           gACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAGGTTTTGAATTAACGCTGCCAg                          >  2:1430336/1‑100 (MQ=255)

                                                                           gACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAGGTTTTGAATTAACGCTGCCAg                          <  1:1060437/100‑1 (MQ=255)

                                                                            aCGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAGGTTTTGAATTAACGCTGCCAGt                         <  2:2032892/100‑1 (MQ=255)

                                                                             cgcgGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAGGTTTTGAATTAACGCTGCCAGtt                        >  2:269012/1‑100 (MQ=255)

                                                                              gcgGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAGGTTTTGAATTAACGCTGCCAGTTc                       <  2:1329715/100‑1 (MQ=255)

                                                                               cgGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAGGTTTTGAATTAACGCTGCCAGTTCa                      >  1:1101579/1‑100 (MQ=255)

                                                                                 gCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAGGTTTTGAATTAACGCTGCCAGTTCAcc                    <  1:2778794/100‑1 (MQ=255)

                                                                                    ggCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAGGTTTTGAATTAACGCTGCCAGTTCACCAGt                 <  1:1279254/100‑1 (MQ=255)

                                                                                     gCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAGGTTTTGAATTAACGCTGCCAGTTCACCAGtc                >  1:920860/1‑100 (MQ=255)

                                                                                     gCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAGGGTTTGAATTAACGCTGCCAGTTCACCAGtc                >  2:496324/1‑100 (MQ=255)

                                                                                      cGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAGGTTTTGAATTAACGCTGCCAGTTCACCAggc                >  2:2991605/1‑97 (MQ=255)

                                                                                      cGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAGGTTTTGAATTAACGCTGCCAGTTCACCAGtca               >  1:2111279/1‑100 (MQ=255)

                                                                                         cGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAGGTTTTGAATTAACGCTGCCAGTTCACCAGtcatca            <  1:1794771/100‑1 (MQ=255)

                                                                                          gCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAGGTTTTGAATTAACGCTGCCAGTTCACCAGTCATCAg           >  1:2963775/1‑100 (MQ=255)

                                                                                          gCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAGGTTTTGAATTAACGCTGCCAGTTCACCAGTCATCAg           <  2:67083/100‑1 (MQ=255)

                                                                                             tccggtAGTAAAGGAAAATCAGCAATTAACGTTGTGCGTCTCCACCTAAGCCTTCAATCAGGTTTTGAATTAACGCTACCAGTTCACCAGTCATCAGGAt        <  1:1772847‑M2/94‑1 (MQ=255)

                                                                                             tccggcATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAGGTTTTGAATTAACGCTGCCAGTTCACCAGTCATCAGGAt        <  1:2304563‑M2/94‑1 (MQ=255)

                                                                                             tccggcATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAGGTTTTGAATTAACGCTGCCAGTTCACCAGTCATCAGGAt        >  2:673702‑M2/7‑100 (MQ=255)

                                                                                             tccggcATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAGGTTTTGAATTAACGCTGCCAGTTCACCAGTCATCAGGAt        <  1:255711‑M2/94‑1 (MQ=255)

                                                                                               cggcATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAGGTTTTGAATTAACGCTGCCAGTTCACCAGTCATCAGGATGa      <  2:2915533‑M2/96‑1 (MQ=255)

                                                                                                 gcATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAGGTTTTGAATTAACGCTGCCAGTTCACCAGTCATCAGGATGaaa    <  2:2838301‑M2/98‑1 (MQ=255)

                                                                                                 gCATTAAAGGAAAATCTGCTATTGACGTTGTGCTTCGCCACCTAAACCTTCAATCTGGTTTTGAATTAAAGCTGCCAGTTCACCAGtcatca            <  1:88669/92‑1 (MQ=255)

                                                                                                   aTTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAGGTTTTGAATTAACGCTGCCAGTTCACCAGTCATCAGGATGAAATc  >  1:136987/1‑100 (MQ=255)

ATATTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAGGTTTTGAATTAACGCTGCCAGTTCACCAGTCATCAGGATGAAATC  >  NC_000913/408990‑409188

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.