New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2304654 =	NA (NA)	5 (0.050)	3/164	NT	100%	noncoding (238/655 nt)	REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences	REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences
	?	NC_000913	2304670 =	0 (0.000)					noncoding (254/655 nt)	REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences	REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences

GCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAG  >  NC_000913/2304571‑2304769                                                                                                    |                                                                                                    gtggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgcctta                                                                                                     <  2:1207744‑M2/1‑1 (MQ=255)  tggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgccttAt                                                                                                    >  1:964912‑M2/99‑100 (MQ=255)  cccGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCAt                                                                                                    >  2:1608987/1‑100 (MQ=11)  cccGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCAt                                                                                                    >  1:824791/1‑100 (MQ=11)   ggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgccttATc                                                                                                   >  1:1795331‑M2/98‑100 (MQ=255)   ggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgccttATc                                                                                                   >  1:2826679‑M2/98‑100 (MQ=255)   ggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgccttATc                                                                                                   >  2:2578100‑M2/98‑100 (MQ=255)   ggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgccttATc                                                                                                   >  2:1189639‑M2/98‑100 (MQ=255)    gagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgccttATcc                                                                                                  >  1:1934546‑M2/97‑100 (MQ=255)     agcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgccttATCCg                                                                                                 <  1:1095354‑M2/5‑1 (MQ=255)      gcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgccttATCCGa                                                                                                <  2:357421‑M2/6‑1 (MQ=255)      gcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgccttATCCGa                                                                                                >  2:458739‑M2/95‑100 (MQ=255)       cacttcacagcggtgtaggtctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgccttATCCg                                                                                                 <  2:2859936‑M2/5‑1 (MQ=255)       cacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgccttATCCGAc                                                                                               <  2:789311‑M2/7‑1 (MQ=255)       cacgtcgcagcggcgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgccttATCCGAc                                                                                               <  1:567388‑M2/7‑1 (MQ=255)         cttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgccgtATCCg                                                                                                 >  1:2187078‑M2/92‑96 (MQ=255)          tccgcagcggtgtaggcctgataagacgcggcagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgccttATCCGa                                                                                                <  1:334579‑M2/6‑1 (MQ=255)                  ggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgccttGtctgagatcggaagagc                                                                                    >  1:2268450‑M2/83‑92 (MQ=255)                                                                         agatgtcggatgcggcgtaaccgccttATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGa                             >  2:409916‑M2/28‑100 (MQ=255)                                                                          gatgtcggatgcggcgtaaccgccttATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGaa                            >  2:833816‑M2/27‑100 (MQ=255)                                                                          gatgtcggatgcggcgtaaccgccttATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGaa                            >  2:449550‑M2/27‑100 (MQ=255)                                                                          gatgtcggatgcggcgtaaccgccttATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGaa                            >  2:187446‑M2/27‑100 (MQ=255)                                                                              tcggatgcggcgtaaccgccttATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGc                        >  1:1849987‑M2/23‑100 (MQ=255)                                                                                                    ATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAg  <  1:449546‑M2/100‑1 (MQ=255)                                                                                                    ATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAg  <  1:1544575‑M2/100‑1 (MQ=255)                                                                                                    |                                                                                                    GCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAG  >  NC_000913/2304571‑2304769

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.