New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 2808135 =NA (NA)4 (0.040) 4/164 NT NA noncoding (5/84 nt) REP193 (repetitive extragenic palindromic) element; contains 2 REP sequences REP193 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 2808165 = NA (NA)noncoding (35/84 nt) REP193 (repetitive extragenic palindromic) element; contains 2 REP sequences REP193 (repetitive extragenic palindromic) element; contains 2 REP sequences

Only 100 of 141 total aligned reads displayed.

AAGCCCACCAGCAGCAGTTCGATGGCTGGGTGAATGAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCATCCCATATTCATCA  >  NC_000913/2808066‑2808263
                                                                                                   |                                                                                                  
aaGCCCACCAGCAGCAGTTCGATGGCTGGGTGAATGAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATccgccg                                                                                                    <  2:2957250/100‑1 (MQ=255)
 aGCCCACCAGCAGCAGTTCGATGGCTGGGTGAATGAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGt                                                                                                   <  2:814754/100‑1 (MQ=255)
  gCCCACCAGCAGCAGTTCAATGTCTGGGTGAATGAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGt                                                                                                   <  1:750914/99‑1 (MQ=255)
  aatgtgcgatgtggtttgtaggcatgataagacgcgccagcgtcgcatcaggcattgtgcacagaacGGCGGATAAGGCGTTTTTGCCGCATCCGCCGtt                                                                                                  >  1:896252‑M1/68‑100 (MQ=255)
   cccACCAGCAGCAGTTCGATGGCTGGGTGAATGAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTc                                                                                                 >  1:2602767/1‑100 (MQ=255)
   cccACCAGCAGCAGTTCGATGGCTGGGTGAATGAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTc                                                                                                 >  1:2721116/1‑100 (MQ=255)
    ccaccaGCAGCAGTTCGATGGCTGGGTGAATGAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCt                                                                                                >  2:1273656/1‑100 (MQ=255)
     caccaGCAGCAGTTCGATGGCTGGGTGAATGAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCtg                                                                                               >  1:2511480/1‑100 (MQ=255)
     caccaGCAGCAGTTCGATGGCTGGGTGAATGAGGCGCTGGCAGCGCAGAAGTAATTTTTATCCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCtg                                                                                               <  1:876200/100‑1 (MQ=255)
      tgcgatgtggtttgtaggcatgataagacgcgccagcgtcgcatcaggcattgtgcacagaacGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCtgt                                                                                              >  2:261965‑M1/64‑100 (MQ=255)
       ccaGCAGCAGTTCGATGGCTGGGTGAATGAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCtgtg                                                                                             <  2:507799/100‑1 (MQ=255)
       ccaGCAGCAGTTCGATGGCTGGGTGAATGAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCtgtg                                                                                             <  2:2652249/100‑1 (MQ=255)
         agcagcagTTCGATGGCTGGGTGAATGAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGca                                                                                           >  1:1334022/1‑100 (MQ=255)
          gcagcagTTCGATGGCTGGGTGAATGAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGcac                                                                                          <  1:1348309/100‑1 (MQ=255)
          gcagcagTTCGATGGCTGGGTGAATGAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGcac                                                                                          >  1:1068987/1‑100 (MQ=255)
           cagcagTTCGATGGCTGGGTGAATGAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGcaca                                                                                         >  1:1885782/1‑100 (MQ=255)
            agcagTTCGATGGCTGGGTGAATGAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACaa                                                                                        >  1:551326/1‑100 (MQ=255)
             tggtttgtaggcatgataagacgcgccagcgtcgcatcaggcattgtgcacagaacGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAAt                                                                                       >  1:2330239‑M1/57‑100 (MQ=255)
             gcagTTCGATGGCTGGGTGAATGAGGCGCTGGCAGCGTAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAAt                                                                                       >  1:1634019/1‑100 (MQ=255)
             gcagTTCGATGGCTGGGTGAATGAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAAt                                                                                       >  2:365618/1‑100 (MQ=255)
             gcagTTCGATGGCTGGGTGAATGAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAAt                                                                                       >  2:365714/1‑100 (MQ=255)
              cagTTCGATGGCTGGGTGAATGAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATg                                                                                      >  2:1189405/1‑100 (MQ=255)
                gTTCGATGGCTGGGTGAATGAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGcc                                                                                    >  1:329674/1‑100 (MQ=255)
                  tCGATGGCTGGGTGAATGAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTg                                                                                  >  2:2967684/1‑100 (MQ=255)
                   cGATGGCTGGGTGAATGAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGa                                                                                 >  2:1807294/1‑100 (MQ=255)
                    gATGGCTGGGTGAATGAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGAt                                                                                <  2:2576303/100‑1 (MQ=255)
                     aTGGCTGGGTGAATGAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATg                                                                               <  1:233309/100‑1 (MQ=255)
                       ggCTGGGTGAATGAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCg                                                                             <  1:1478257/100‑1 (MQ=255)
                       ggCTGGGTGAATGAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCg                                                                             <  1:526573/100‑1 (MQ=255)
                       ggCTGGGTGAATGAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCg                                                                             >  1:184738/1‑100 (MQ=255)
                        gCTGGGTGAATGAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGa                                                                            >  2:1581572/1‑100 (MQ=255)
                        gCTGGGTGAATGAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGa                                                                            >  2:1581410/1‑100 (MQ=255)
                           gggTGAATGAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGc                                                                         >  1:1478614/1‑100 (MQ=255)
                            ggTGAATGAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCt                                                                        >  2:2564106/1‑100 (MQ=255)
                              tGAATGAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTgg                                                                      >  2:2606721/1‑100 (MQ=255)
                                aaTGAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGgcg                                                                    <  2:288230/100‑1 (MQ=255)
                                 cttctgcgcTGCCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGgcgc                                                                   >  2:228938/6‑100 (MQ=255)
                                  tGAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGcgcg                                                                  <  2:2386572/100‑1 (MQ=255)
                                   gAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGt                                                                 >  2:1013641/1‑100 (MQ=255)
                                    aGGCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTc                                                                >  1:435038/1‑100 (MQ=255)
                                     ggCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCt                                                               >  2:2825934/1‑100 (MQ=255)
                                     ggCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCt                                                               >  2:1093696/1‑100 (MQ=255)
                                      gcgcTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCtt                                                              <  2:2224416/100‑1 (MQ=255)
                                      gcgcTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCtt                                                              <  2:2225092/100‑1 (MQ=255)
                                        gcTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTAt                                                            >  2:2739437/1‑100 (MQ=255)
                                          tGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCa                                                          >  1:785599/1‑100 (MQ=255)
                                            gCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATg                                                        <  2:921393/100‑1 (MQ=255)
                                             cAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGc                                                       <  1:736636/100‑1 (MQ=255)
                                             cAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGc                                                       <  2:2183819/100‑1 (MQ=255)
                                              aGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGcc                                                      >  1:2352895/1‑100 (MQ=255)
                                               gcgcAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCt                                                     <  2:679617/100‑1 (MQ=255)
                                                cgcAGAAGTAATTTTTTTTTTTTTGTATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTa                                                    >  1:2659861/1‑100 (MQ=21)
                                                 gcAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCt                                                     <  1:1289457/98‑1 (MQ=255)
                                                  cAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACa                                                  >  2:444029/1‑100 (MQ=255)
                                                    gAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACaaa                                                >  1:1806568/1‑100 (MQ=255)
                                                     aaGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAAc                                               >  2:2344876/1‑100 (MQ=255)
                                                       gTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACca                                             <  2:1884072/100‑1 (MQ=255)
                                                       gTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACca                                             <  2:519701/100‑1 (MQ=255)
                                                         aaTTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACcaca                                           >  1:329946/1‑100 (MQ=255)
                                                           tttttATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATc                                         >  2:3042353/1‑100 (MQ=255)
                                                             tttATTCGGGCGGGTAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGc                                       <  1:1415552/100‑1 (MQ=255)
                                                              ttATTCGGGCGGATAAGGCGTTTTTGTTTTTTTTTTCTTTCTGTGCACAATGCCTGATGCGCCGCTGGCGCGTCTTATCATGCCTACAAACCACATCGc                                       >  1:2630765/1‑99 (MQ=18)
                                                              acagaacggcggatgcggcaaaaacgccttatccgccGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGca                                      >  2:261965‑M2/38‑100 (MQ=255)
                                                               tATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGcac                                     <  2:190956/100‑1 (MQ=255)
                                                                aTTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGcaca                                    >  1:635726/1‑100 (MQ=255)
                                                                  aacggcggatgcggcaaaaacgccttatccgccGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACAtt                                  >  1:896252‑M2/34‑100 (MQ=255)
                                                                   cGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACAttt                                 <  2:2844655/100‑1 (MQ=255)
                                                                   cGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACAttt                                 >  2:106147/1‑100 (MQ=255)
                                                                     GGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTca                               >  2:2420564‑M1/1‑100 (MQ=255)
                                                                     GGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTca                               >  2:2511494‑M1/1‑100 (MQ=255)
                                                                      GCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTcaa                              >  1:1188091‑M1/1‑100 (MQ=255)
                                                                      GCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTca                               >  1:1807283‑M1/1‑99 (MQ=255)
                                                                       CGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTcaac                             >  2:1362187‑M1/1‑100 (MQ=255)
                                                                       CGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTcaac                             >  1:3037409‑M1/1‑100 (MQ=255)
                                                                         GATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTcaacaa                           <  1:2898286‑M1/100‑1 (MQ=255)
                                                                            aaGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAatct                        <  2:2167029/100‑1 (MQ=255)
                                                                             aGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAatcta                       >  1:418080/1‑100 (MQ=255)
                                                                              ggCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAatctat                      >  2:2050883/1‑100 (MQ=255)
                                                                               gCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAatctatc                     <  1:1708998/100‑1 (MQ=255)
                                                                                ngTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAatctatct                    >  2:1697171/2‑100 (MQ=255)
                                                                                cGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAatctatct                    >  2:2706840/1‑100 (MQ=255)
                                                                                cGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAatctatct                    >  2:2099644/1‑100 (MQ=255)
                                                                                cGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAatctatct                    <  2:3054779/100‑1 (MQ=255)
                                                                                 gTTTTTGCCGCATCCGCCGTTCTGTACACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCtt                   >  2:1399136/1‑100 (MQ=255)
                                                                                 gTTTTTGCCACATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCtt                   <  1:1336138/100‑1 (MQ=255)
                                                                                    tttGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCa                <  1:2121045/100‑1 (MQ=255)
                                                                                    tttGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCa                <  2:2637302/100‑1 (MQ=255)
                                                                                     ttGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCAt               <  1:2488720/100‑1 (MQ=255)
                                                                                      tGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCATc              >  2:2003295/1‑100 (MQ=255)
                                                                                       gCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCATcc             >  1:2940003/1‑100 (MQ=255)
                                                                                       gCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCATcc             <  1:784918/100‑1 (MQ=255)
                                                                                         cGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCATCCCa           <  2:2313361/100‑1 (MQ=255)
                                                                                         cGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCATCCCa           <  2:2834352/100‑1 (MQ=255)
                                                                                         cGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCATCCCa           >  1:2300782/1‑100 (MQ=255)
                                                                                         cGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCATCCCa           <  1:1273650/100‑1 (MQ=255)
                                                                                              ccgccGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCATCCCATATtc      <  1:2457923‑M2/95‑1 (MQ=255)
                                                                                               cgccGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCATCCCATATtca     <  2:1579388‑M2/96‑1 (MQ=255)
                                                                                                gccGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCATCCCATATtcat    >  2:73254‑M2/4‑100 (MQ=255)
                                                                                                 ccgTTCTGTGCACAATGCCTGATGCGCCGCTGGCGCGTTTTATCATGCCTACAACCCATATCGCACATTTCAACAATCTATATCTCATCCCATCTtcctc   <  1:1667000/100‑1 (MQ=25)
                                                                                                  cGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCATCCCATATtcatca  <  1:2742814‑M2/99‑1 (MQ=255)
                                                                                                   |                                                                                                  
AAGCCCACCAGCAGCAGTTCGATGGCTGGGTGAATGAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCATCCCATATTCATCA  >  NC_000913/2808066‑2808263

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.