BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
MC JC	NC_000913	1,978,503	Δ776 bp	100%		insB1–insA	insB1, insA

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	1978503–1979270	1979278	9–776	137 [0]	[0] 131	insB1–insA	insB1, insA

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1978502	0 (0.000)	111 (1.080)	72/162	NT	100%	intergenic (‑305/+16)	flhD/insB1	flagellar class II regulon transcriptional activator, with FlhC/IS1 transposase B
*	?	NC_000913	1979279 =	0 (0.000)	111 (1.080)	72/162	NT	100%	intergenic (‑64/‑474)	insA/uspC	IS1 repressor TnpA/universal stress protein

Only 100 of 131 total aligned reads displayed.

CAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATG  >  NC_000913/1979184‑1979377

ctcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgtata                                                                                                 >  2:416604‑M2/96‑99 (MQ=255)

ctcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATaa                                                                                                >  2:1640943‑M2/96‑100 (MQ=255)

ctcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATaa                                                                                                >  2:290084‑M2/96‑100 (MQ=255)

 tcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacgtaaatgTATAAg                                                                                               <  2:2013222‑M2/6‑1 (MQ=255)

 tcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacctaaatgTATAAg                                                                                               <  1:2534462‑M2/6‑1 (MQ=255)

 tcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAg                                                                                               <  2:324259‑M2/6‑1 (MQ=255)

 ncgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacagaacactcaattacttaacataaatgTATAAg                                                                                               >  2:652487‑M2/95‑100 (MQ=255)

  cgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATaa                                                                                                >  1:2726300‑M2/94‑98 (MQ=255)

  cgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGt                                                                                              <  1:340958‑M2/7‑1 (MQ=255)

  cgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGt                                                                                              >  2:2169140‑M2/94‑100 (MQ=255)

   gtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTc                                                                                             <  2:254990‑M2/8‑1 (MQ=255)

    gcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCa                                                                                            >  1:2077725‑M2/92‑100 (MQ=255)

       ctacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATAc                                                                                         >  1:6537‑M2/89‑100 (MQ=255)

          cacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACttt                                                                                      <  1:2275095‑M2/15‑1 (MQ=255)

            cgcacatacaacggaggggggctgcgattttccataatgtgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACttttg                                                                                    <  1:2146327‑M2/17‑1 (MQ=255)

            cgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACttttg                                                                                    >  2:2126398‑M2/84‑100 (MQ=255)

                catacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACttttgtttt                                                                                >  1:1745717‑M2/80‑100 (MQ=255)

                  tacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTgg                                                                              >  1:676063‑M2/78‑100 (MQ=255)

                  tacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTgg                                                                              <  2:1503381‑M2/23‑1 (MQ=255)

                   acaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTggg                                                                             <  1:1030206‑M2/24‑1 (MQ=255)

                   acaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTggg                                                                             >  1:1362835‑M2/77‑100 (MQ=255)

                   acaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTggg                                                                             >  1:693080‑M2/77‑100 (MQ=255)

                   acaacggaggggggctgcgattttcaataatgcgcgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTggg                                                                             <  1:1613579‑M2/24‑1 (MQ=255)

                    caacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGgt                                                                            >  2:2343477‑M2/76‑100 (MQ=255)

                    caacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGgt                                                                            >  2:1508220‑M2/76‑100 (MQ=255)

                     aacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGgtg                                                                           <  1:2622654‑M2/26‑1 (MQ=255)

                       cggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTa                                                                         >  2:2672424‑M2/73‑100 (MQ=255)

                        ggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTAt                                                                        >  1:2016783‑M2/72‑100 (MQ=255)

                        ggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTAt                                                                        >  1:2926227‑M2/72‑100 (MQ=255)

                         gaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTAtt                                                                       <  2:1747625‑M2/30‑1 (MQ=255)

                         gaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTAtt                                                                       >  2:1008182‑M2/71‑100 (MQ=255)

                         gaggggagctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTAtt                                                                       <  1:56626‑M2/30‑1 (MQ=255)

                           ggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTc                                                                     <  1:2473126‑M2/32‑1 (MQ=255)

                           ggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTc                                                                     <  2:2206012‑M2/32‑1 (MQ=255)

                            gggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCa                                                                    >  1:891798‑M2/68‑100 (MQ=255)

                            gggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCa                                                                    >  1:1679482‑M2/68‑100 (MQ=255)

                             ggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCaa                                                                   >  1:1561684‑M2/67‑100 (MQ=255)

                             ggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCaa                                                                   >  1:1111572‑M2/67‑100 (MQ=255)

                               ggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATc                                                                 >  2:1018284‑M2/65‑100 (MQ=255)

                                 ctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCt                                                                >  1:1327760‑M2/63‑99 (MQ=255)

                                  tgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGt                                                              <  2:923706‑M2/39‑1 (MQ=255)

                                   gcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGtt                                                             <  1:591675‑M2/40‑1 (MQ=255)

                                   gcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGtt                                                             >  2:2294660‑M2/61‑100 (MQ=255)

                                    cgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTa                                                            >  2:1300032‑M2/60‑100 (MQ=255)

                                    cgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTa                                                            <  1:138500‑M2/41‑1 (MQ=255)

                                     gattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTa                                                            <  1:138692‑M2/41‑1 (MQ=255)

                                       ttttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTaaaa                                                         >  2:1501788‑M2/57‑100 (MQ=255)

                                       ttttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTaaaa                                                         >  2:920946‑M2/57‑100 (MQ=255)

                                        tttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTaaaaa                                                        <  2:111801‑M2/45‑1 (MQ=255)

                                         ttcaataatgtgtgatgcagatcacaaaaaacactcaattacttaacatatatcTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAg                                                       <  1:2841456‑M2/46‑1 (MQ=255)

                                         ttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAg                                                       >  1:535194‑M2/55‑100 (MQ=255)

                                           caataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGtt                                                     >  2:2809370‑M2/53‑100 (MQ=255)

                                           caataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGtt                                                     >  2:312173‑M2/53‑100 (MQ=255)

                                            aataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGttt                                                    >  2:1833066‑M2/52‑100 (MQ=255)

                                              taatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGttttt                                                  >  2:1179139‑M2/50‑100 (MQ=255)

                                              taatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGttttt                                                  >  1:780136‑M2/50‑100 (MQ=255)

                                               aatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTc                                                 >  2:2810263‑M2/49‑100 (MQ=255)

                                                 tgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcgc                                               <  1:1465681‑M2/54‑1 (MQ=255)

                                                  gcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCCATCTGTTAAAAAGTTTTTcgct                                              >  2:1478533‑M2/46‑100 (MQ=255)

                                                    gtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcgctac                                            <  1:290082‑M2/57‑1 (MQ=255)

                                                    gtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTGTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcgctac                                            >  1:564477‑M2/44‑100 (MQ=255)

                                                     tgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcgctacg                                           >  1:462845‑M2/43‑100 (MQ=255)

                                                      gatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcgctacgc                                          <  2:2481948‑M2/59‑1 (MQ=255)

                                                      gatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcgctacgc                                          <  2:2313055‑M2/59‑1 (MQ=255)

                                                       atgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcgctacgct                                         <  1:1176657‑M2/60‑1 (MQ=255)

                                                       atgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcgctacgct                                         <  1:416600‑M2/60‑1 (MQ=255)

                                                         gcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTag                                       >  2:2737093‑M2/39‑100 (MQ=255)

                                                         gcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTag                                       <  1:2437792‑M2/62‑1 (MQ=255)

                                                            gatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTagcaa                                    <  2:564012‑M2/65‑1 (MQ=255)

                                                            gatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTagcaa                                    >  1:2634932‑M2/36‑100 (MQ=255)

                                                            gatcacacaaaacactcaattacttaacataaatgTATAAGACATACTTTTGTTTTGGGTGTATTTCTATCTGTTAAAAAGTTTTTtgctacgct                                         >  1:2513849‑M2/36‑95 (MQ=255)

                                                              tcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTagcaagc                                  >  1:594489‑M2/34‑100 (MQ=255)

                                                                acacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAgcaagcaa                                <  1:1018278‑M2/69‑1 (MQ=255)

                                                                    aaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAAt                            <  1:1289536‑M2/73‑1 (MQ=255)

                                                                    aaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAAt                            <  2:693085‑M2/73‑1 (MQ=255)

                                                                    aaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAAt                            <  2:865557‑M2/73‑1 (MQ=255)

                                                                     aaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATg                           <  1:2327370‑M2/74‑1 (MQ=255)

                                                                     aaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATg                           <  2:2372385‑M2/74‑1 (MQ=255)

                                                                       acactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGaa                         <  2:1812841‑M2/76‑1 (MQ=255)

                                                                          ctcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACa                      >  1:553335‑M2/22‑100 (MQ=255)

                                                                           tcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAg                     <  2:1251289‑M2/80‑1 (MQ=255)

                                                                            caattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAgg                    >  2:2433386‑M2/20‑100 (MQ=255)

                                                                            caattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAgg                    >  1:717742‑M2/20‑100 (MQ=255)

                                                                            caattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAg                     >  1:2804676‑M2/20‑99 (MQ=255)

                                                                             aattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGa                   <  1:1493674‑M2/82‑1 (MQ=255)

                                                                              attacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGaa                  >  2:2093440‑M2/18‑100 (MQ=255)

                                                                              attacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGaa                  <  2:1721368‑M2/83‑1 (MQ=255)

                                                                                tacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGaata                <  1:1569846‑M2/85‑1 (MQ=255)

                                                                                 acttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGaataa               >  1:781276‑M2/15‑100 (MQ=255)

                                                                                    taacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCg            >  1:1029804‑M2/12‑100 (MQ=255)

                                                                                    taacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCg            >  1:1483361‑M2/12‑100 (MQ=255)

                                                                                       cataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGaaa         >  2:255370‑M2/9‑100 (MQ=255)

                                                                                       cataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGaaa         >  1:53192‑M2/9‑100 (MQ=255)

                                                                                         taaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATg       >  2:2805160‑M2/7‑100 (MQ=255)

                                                                                             tgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGa    <  2:2094180‑M2/97‑1 (MQ=255)

                                                                                             tgTATAAGTCATACTTTTGTTTGGGGTGTATTACAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAGGCAAAAATGAAACAGGAATAATGGAAATGGGa    >  2:2903605‑M2/3‑99 (MQ=255)

                                                                                              gTATAGGTCATAATTTTGTTTTGGGTGGATTTCAATCTGTTAAAAAGTTTTTGGCTACGCTTGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATg  <  1:1879740‑M2/99‑1 (MQ=255)

                                                                                              gTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGa    <  2:133693‑M2/97‑1 (MQ=255)

                                                                                              gTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATg  <  2:1362841‑M2/99‑1 (MQ=255)

                                                                                              gTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATg  >  1:2732082‑M2/2‑100 (MQ=255)

CAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATG  >  NC_000913/1979184‑1979377

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`