Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,018,260 (A)8→7 coding (315/444 nt) fliJ → flagellar protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,018,2530A.100.0% 527.0 / NA 112coding (308/444 nt)fliJflagellar protein
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base . (59/53);  total (59/53)

Only 100 of 125 total aligned reads displayed.

AGCAGTTTATCCAGACGCTGGAAAAAGCCATTACTCAGCATCGCCAGCAACTTAATCAGTGGACGCAGAAAGTTGACATTGCCCTGAACAGTTGGCGAGAAAAAAAACAACGTTTGCAGGCCTGGCAGACACTGCAGGAACGGCAATCCACGGCGGCACTGCTTGCAGAAAACCGCCTCGATCAGAAAAAGATGG  >  NC_000913/2018154‑2018348
                                                                                                   |                                                                                               
agcagTTTATCCAGACGCTGGAAAAAGCCATTACTCAGCATCGCCAGCAACTTAATCAGTGGACGCAGAAAGTTGACATTGCCCTGAACAGTTGGCgaga                                                                                                 >  1:1051310/1‑100 (MQ=255)
agcagTTTATCCAGACGCTGGAAAAAGCCATTACTCAGCATCGCCAGCAACTTAATCAGTGGACGCAGAAAGTTGACATTGCCCTGAACAGTTGGCgaga                                                                                                 >  1:1015868/1‑100 (MQ=255)
agcagTTTATCCAGACGCTGGAAAAAGCCATTACTCAGCATCGCCAGCAACTTAATCAGTGGACGCAGAAAGTTGACATTGCCCTGAACAGTTGGCgaga                                                                                                 >  1:368874/1‑100 (MQ=255)
  cagTTTATCCAGACGCTGGAAAAAGCCATTACTCAGCATCGCCAGCAACTTAATCAGTGGACGCAGAAAGTTGACATTGCCCTGAACAGTTGGCGAGaaa                                                                                               >  2:872218/1‑100 (MQ=255)
   agTTTATCCAGACGCTGGAAAAAGCCATTACTCAGCATCGCCAGCAACTTAATCAGTGGACGCAGAAAGTTGACATTGCCCTGAACAGTTGGCGAGaaaa                                                                                              >  1:863827/1‑100 (MQ=255)
   agTTTATCCAGACGCTGGAAAAAGCCATTACTCAGCATCGCCAGCAACTTAATCAGTGGACGCAGAAAGTTGACATTGCCCTGAACAGTTGGCGAGaaaa                                                                                              >  2:1890376/1‑100 (MQ=255)
     tttATCCAGACGCTGGAAAAAGCCATTACTCAGCATCGCCAGCAACTTAATCAGTGGACGCAGAAAGTTGACATTGCCCTGAACAGTTGGCGAGaaaaaa                                                                                            <  1:2569965/100‑1 (MQ=255)
       cttCCAGACGCTGGAAAAAGCCATTACTCAGCATCGCCAGCAACTTAATCAGTGGACGCAGAAAGTTGACATTGCCCTGAACAGTTGGCGAGaaaaaaac                                                                                          <  1:150590/98‑2 (MQ=255)
         tCCAGACGCTGGAAAAAGCCATTACTCAGCATCGCCAGCAACTTAATCAGTGGACGCAGAAAGTTGACATTGCCCTGAACAGTTGGCGAGaaaaaaacag                                                                                        >  2:150588/1‑97 (MQ=255)
         tCCAGACGCTGGAAAAAGCCATTACTCAGCATCGCCAGCAACTTAATCAGTGGACGCAGAAAGTTGACATTGCCCTGAACAGTTGGCGAGaaaaaaacaa                                                                                        >  2:1877798/1‑97 (MQ=255)
         tCCAGACGCTGGAAAAAGCCATTACTCAGCATCGCCAGCAACTTAATCAGTGGACGCAGAAAGTTGACATTGCCCTGAACAGTTGGCGAGaaaaaaacaa                                                                                        <  1:326970/100‑4 (MQ=255)
          ccAGACGCTGGAAAAAGCCATTACTCAGCATCGCCAGCAACTTAATCAGTGGACGCAGAAAGTTGACATTGCCCTGAACAGTTGGCGAGaaaaaaacaac                                                                                       >  2:493402/1‑96 (MQ=255)
           cAGACGCTGGAAAAAGCCATTACTCAGCATCGCCAGCAACTTAATCAGTGGACGCAGAAAGTTGACATTGCCCTGAACAGTTGGCGAGAAAAAAACAACg                                                                                     >  1:774494/1‑100 (MQ=255)
            aGACGCTGGAAAAAGCCATTACTCAGCATCGCCAGCAACTTAATCAGTGGACGCAGAAAGTTGACATTGCCCTGAACAGTTGGCGAGaaagatcggaaga                                                                                     >  1:2215187/1‑90 (MQ=255)
             gACGCTGGAAAAAGCCATTACTCAGCATCGCCAGCAACTTAATCAGTGGACGCAGAAAGTTGACATTGCCCTGAACAGTTGGCGAGAAAAAAACAACGtt                                                                                   <  1:2499277/100‑1 (MQ=255)
             gACGCTGGAAAAAGCCATTACTCAGCATCGCCAGCAACTTAATCAGTGGACGCAGAAAGTTGACATTGCCCTGAACAGTTGGCGAGAAAAAAACAACGtt                                                                                   <  1:526707/100‑1 (MQ=255)
               cGCTGGAAAAAGCCATTACTCAGCATCGCCAGCAACTTAATCAGTGGACGCAGAAAGTTGACATTGCCCTGAACAGTTGGCGAGAAAAAAACAACGTTTg                                                                                 >  1:834328/1‑100 (MQ=255)
                 cTGGAAAAAGCCATTACTCAGCATCGCCAGCAACTTAATCAGTGGACGCAGAAAGTTGACATTGCCCTGAACAGTTGGCGAGAAAAAAACAACGTTTGc                                                                                <  2:2840529/99‑1 (MQ=255)
                 cTGGAAAAAGCCATTACTCAGCATCGCCAGCAACTTAATCAGTGGACGCAGAAAGTTGACATTGCCCTGAACAGTTGGCGAGAAAAAAACAACGTTTGCa                                                                               <  2:2839750/100‑1 (MQ=255)
                 cTGGAAAAAGCCATTACTCAGCATCGCCAGCAACTTAATCAGTGGACGCAGAAAGTTGACATTGCCCTGAACAGTTGGCGAGAAAAAAACAACGTTTGCa                                                                               <  1:1947444/100‑1 (MQ=255)
                 cTGGAAAAAGCCATTACTCAGCATCGCCAGCAACTTAATCAGTGGACGCAGAAAGTTGACATTGCCCTGAACAGTTGGCGAGAAAAAAACAACGTTTGCa                                                                               >  2:275383/1‑100 (MQ=255)
                 cTGGAAAAAGCCATTACTCAGCATCGCCAGCAACTTAATCAGTGGACGCAGAAAGTTGACATTGCCCTGAACAGTTGGCGAGAAAAAAACAACGTTCGc                                                                                >  2:1921572/1‑99 (MQ=255)
                  tGGAAAAAGCCATTACTCAGCATCGCCAGCAACTTAATCAGTGGACGCAGAAAGTTGACATTGCCCTGAACAGTTGGCGAGAAAAAAACAACGTTTGc                                                                                <  2:1120483/98‑1 (MQ=255)
                   ggAAAAAGCCATTACTCAGCATCGCCAGCAACTTAATCAGTGGACGCAGAAAGTTGACATTGCCCTGAACAGTTGGCGAGAAAAAAACAACGTTTGCAgg                                                                             <  1:2518118/100‑1 (MQ=255)
                   ggAAAAAGCCATTACTCAGCATCGCCAGCAACTTAAGCAGTGGACGCAGAAAGTTGACATTGCCCTGAACAGTTGGCGAGAAAAAAACAACGTTTGCAgg                                                                             >  2:2494509/1‑100 (MQ=255)
                    naaaaaGCCATTACTCAGCATCGCCAGCAACTTAATCAGTGGACGCAGAAAGTTGACATTGCCCTGAACAGTTGGCGAGAAAAAAACAACGTTTGCAGGc                                                                            >  2:1605015/2‑100 (MQ=255)
                    gAAAAAGCCATTACTCAGCATCGCCAGCAACTTAATCAGTGGACGCAGAAAGTTGACATTGCCCTGAACAGTTGGCGAGAAAAAAACAACGTTTGCAGGc                                                                            >  2:2562340/1‑100 (MQ=255)
                     aaaaaGCCATTACTCAGCATCGCCAGCAACTTAATCAGTGGACGCAGAAAGTTGACATTGCCCTGAACAGTTGGCGAGAAAAAAACAACGTTTGCAGGcc                                                                           >  1:1182770/1‑100 (MQ=255)
                       aaaGCCATTACTCAGCATCGCCAGCAACTTAATCAGTGGACGCAGAAAGTTGACATTGCCCTGAACAGTTGGCGAGAAAAAAACAACGTTTGCAGGCCTg                                                                         <  2:2066778/100‑1 (MQ=255)
                        aaGCCATTACTCAGCATCGCCAGCAACTTAATCAGTGGACGCAGAAAGTTGACATTGCCCTGAACAGTTGGCGAGAAAAAAACAACGTTTGCAGGCCTgg                                                                        <  1:364817/100‑1 (MQ=255)
                          ggcATTACTCAGCATCGCCAGCAACTTAATCAGTGGACGCAGTAAGTTGACATTGCCCTGAACAGTTGGCGAGAAAAAAACAACGTTTGCAGGCCTGGCa                                                                      >  1:2010779/3‑100 (MQ=255)
                          gCCATTACTCAGCATCGCCAGCAACTTAATCAGTGGACGCAGAAAGTTGACATTGCCCTGAACAGTTGGCGAGAAAAAAACAACGTTTGCAGGCCTGGCa                                                                      >  1:240953/1‑100 (MQ=255)
                           ccATTACTCAGCATCGCCAGCAACTTAATCAGTGGACGCAGAAAGTTGACATTGCCCTGAACAGTTGGCGAGAAAAAAACAACGTTTGCAGGCCTGGCAg                                                                     <  2:2417079/100‑1 (MQ=255)
                            cATTACTCAGCATCGCCAGCAACTTAATCAGTGGACGCAGAAAGTTGACATTGCCCTGAACAGTTGGCGAGAAAAAAACAACGTTTGCAGGCCTGGCAGa                                                                    >  2:1120014/1‑100 (MQ=255)
                            cATTACTCAGCATCGCCAGCAACTTAATCAGTGGACGCAGAAAGTTGACATTGCCCTGAACAGTTGGCGAGAAAAAAACAACGTTTGCAGGCCTGGCAGa                                                                    <  1:2822172/100‑1 (MQ=255)
                            cATTACTCAGCATCGCCAGCAACTTAATCAGTGGACGCAGAAAGTTGACATTGCCCTGAACAGTTGGCGAGAAAAAAACAACGTTTGCAGGCCTGGCAGa                                                                    >  2:839413/1‑100 (MQ=255)
                             aTTACTCAGCATCGCCAGCAACTTAATCAGTGGACGCAGAAAGTTGACATTGCCCTGAACAGTTGGCGAGAAAAAAACAACGTTTGCAGGCCTGGCAGac                                                                   <  1:998764/100‑1 (MQ=255)
                               tACTCAGCATCGCCAGCAACTTAATCAGTGGACGCAGAAAGTTGACATTGCCCTGAACAGTTGGCGAGAAAAAAACAACGTTTGCAGGCCTGGCAGacac                                                                 >  1:2862164/1‑100 (MQ=255)
                               tACTCAGCATCGCCAGCAACTTAATCAGTGGACGCAGAAAGTTGACATTGCCCTGAACAGTTGGCGAGAAAAAAACAACGTTTGCAGGCCTGGCAGacac                                                                 >  1:1948670/1‑100 (MQ=255)
                                aCTCAGCATCGCCAGCAACTTAATCAGTGGACGCAGAAAGTTGACATTGCCCTGAACAGTTGGCGAGAAAAAAACAACGTTTGCAGGTCTGGCAGACACt                                                                <  1:1967059/100‑1 (MQ=255)
                                 cTCAGCATCGCCAGCAACTTAATCAGTGGACGCAGAAAGTTGACATTGCCCTGAACAGTTGGCGAGAAAAAAACAACGTTTGCAGGCCTGGCAGACACTg                                                               >  2:285028/1‑100 (MQ=255)
                                 cTCAGCATCGCCAGCAACTTAATCAGTGGACGCAGAAAGTTGACATTGCCCTGAACAGTTGGCGAGAAAAAAACAACGTTTGCAGGCCTGGCAGACACTg                                                               >  1:1388921/1‑100 (MQ=255)
                                  tCAGCATCGCCAGCAACTTAATCAGTGGACGCAGAAAGTTGACATTGCCCTGAACAGTTGGCGAGAAAAAAACAACGTTTGCAGGCCTGGCAGACACTGc                                                              <  1:1890387/100‑1 (MQ=255)
                                   cAGCATCGCCAGCAACTTAATCAGTGGACGCAGAAAGTTGACATTGCCCTGAACAGTTGGCGAGAAAAAAACAACGTTTGCAGGCCTGGCAGACACTGCa                                                             <  1:2496266/100‑1 (MQ=255)
                                   cAGCATCGCCAGCAACTTAATCAGTGGACGCAGAAAGTTGACATTGCCCTGAACAGTTGGCGAGAAAAAAACAACGTTTGCAGGCCTGGCAGACACTGCa                                                             >  1:915418/1‑100 (MQ=255)
                                   cAGCATCGCCAGCAACTTAATCAGTGGACGCAGAAAGTTGACATTGCCCTGAACAGTTGGCGAGAAAAAAACAACGTTTGCAGGCCTGGCAGACACTGCa                                                             <  1:1241412/100‑1 (MQ=255)
                                   cAGCATCGCCAGCAACTTAATCAGTGGACGCAGAAAGTTGACATTGCCCTGAACAGTTGGCGAGAAAAAAACAACGTTTGCAGGCCTGGCAGACACTGCa                                                             <  2:1388913/100‑1 (MQ=255)
                                   cAGCATCGCCAGCAACTTAATCAGTGGACGCAGAAAGTTGACATTGCCCTGAACAGTTGGCGAGAAAAAAACAACGTTTGCAGGCCTGGCAGACACTGCa                                                             >  1:1806360/1‑100 (MQ=255)
                                     gCATCGCCAGCAACTTAATCAGTGGACGCAGAAAGTTGACATTGCCCTGAACAGTTGGCGAGAAAAAAACAACGTTTGCAGGCCTGGCAGACACTGCAgg                                                           <  2:368872/100‑1 (MQ=255)
                                     gCATCGCCAGCAACTTAATCAGTGGACGCAGAAAGTTGACATTGCCCTGAACAGTTGGCGAGAAAAAAACAACGTTTGCAGGCCTGGCAGACACTGCAgg                                                           >  2:1099666/1‑100 (MQ=255)
                                     gCATCGCCAGCAACTTAATCAGTGGACGCAGAAAGTTGACATTGCCCTGAACAGTTGGCGAGAAAAAAACAACGTTTGCAGGCCTGGCAGACACTGCAgg                                                           <  2:1051305/100‑1 (MQ=255)
                                       aTCGCCAGCAACTTAATCAGTGGACGCAGAAAGTTGACATTGCCCTGAACAGTTGGCGAGAAAAAAACAACGTTTGCAGGCCTGGCAGACACTGCAGGaa                                                         >  2:2846312/1‑100 (MQ=255)
                                        tCGCCAGCAACTTAATCAGTGGACGCAGAAAGTTGACATTGCCCTGAACAGTTGGCGAGAAAAAAACAACGTTTGCAGGCCTGGCAGACACTGCAGGAAc                                                        <  2:1347950/100‑1 (MQ=255)
                                         cGCCAGCAACTTAATCAGTGGACGCAGAAAGTTGACATTGCCCTGAACAGTTGGCGAGAAAAAAACAACGTTTGCAGGCCTGGCAGACACTGCAGGAACg                                                       >  1:356194/1‑100 (MQ=255)
                                          gCCAGCAACTTAATCAGTGGACGCAGAAAGTTGACATTGCCCTGAACAGTTGGCGAGAAAAAAACAACGTTTGCAGGCCTGGCAGACACTGCAGGAACgg                                                      >  2:1166825/1‑100 (MQ=255)
                                          gCCAGCAACTTAATCAGTGGACGCAGAAAGTTGACATTGCCCTGAACAGTTGGCGAGAAAAAAACAACGTTTGCAGGCCTGGCAGACACTGCAGGAACgg                                                      >  2:2953717/1‑100 (MQ=255)
                                            cAGCAACTTAATCAGTGGATGCAGAAAGTTGACATTGCCCTGAACAGTTGGCGAGAAAAAAACAACGTTTGCAGGCCTGGCAGACACTGCAGGAACGGc                                                     <  2:367148/99‑1 (MQ=255)
                                                 aCTTAATCAGTGGACGCAGAAAGTTGACATTGCCCTGAACAGTTGGCGAGAAAAAAACAACGTTTGCAGGCCTGGCAGACACTGCAGGAACGGCAATCCa                                               >  1:880340/1‑100 (MQ=255)
                                                    tAATCAGTGGACGCAGAAAGTTGACATTGCCCTGAACAGTTGGCGAGAAAAAAACAACGTTTGCAGGCCTGGCAGACACTGCAGGAACGGCAATCCAcgg                                            >  1:1151277/1‑100 (MQ=255)
                                                    tAATCAGTGGACGCAGAAAGTTGACATTGCCCTGAACAGTTGGCGAGAAAAAAACAACGTTTGCAGGCCTGGCAGACACTGCAGGAACGGCAATCCAcgg                                            >  1:233245/1‑100 (MQ=255)
                                                     aaTCAGTGGACGCAGAAAGTTGACATTGCCCTGAACAGTTGGCGAGAAAAAAACAACGTTTGCAGGCCTGGCAGACACTGCAGGAACGGCAATCCAcggc                                           >  2:1965580/1‑100 (MQ=255)
                                                     aaTCAGTGGACGCAGAAAGTTGACATTGCCCTGAACAGTTGGCGAGAAAAAAACAACGTTTGCAGGCCTGGCAGACACTGCAGGAACGGCAATCCAcggc                                           >  2:1380543/1‑100 (MQ=255)
                                                     aaTCAGTGGACGCAGAAAGTTGACATTGCCCTGAACAGTTGGCGAGAAAAAAACAACGTTTGCAGGCCTGGCAGACACTGCAGGAACGGCAATCCAcggc                                           <  2:1610934/100‑1 (MQ=255)
                                                      aTCAGTGGACGCAGAAAGTTGACATTGCCCTGAACAGTTGGCGAGAAAAAAACAACGTTTGCAGGCCTGGCAGACACTGCAGGAACGGCAATCCAcggcg                                          <  1:839416/100‑1 (MQ=255)
                                                       tCAGTGGACGCAGAAAGTTGACATTGCCCTGAACAGTTGGCGAGAAAAAAACAACGTTTGCAGGCCTGGCAGACACTGCAGGAACGGCAATCCAcggcgg                                         >  2:2976211/1‑100 (MQ=255)
                                                         aGTGGACGCAGAACGTTGACATTGCCCTGAAAAGTTGGCGAGAAAAAAACAACGTTTGCAGGCCTGGCAGACACTGCAGGAACGGCAATCCACGGCGGCa                                       >  1:2008613/1‑100 (MQ=255)
                                                          gTGGACGCAGAAAGTTGACATTGCCCTGAACAGTTGGCGAGAAAAAAACAACGTTTGCAGGCCTGGCAGACACTGCAGGAACGGCAATCCACGGCGGCAc                                      >  1:2442092/1‑100 (MQ=255)
                                                           tGGACGCAGAAAGTTGACATTGCCCTGAACAGTTGGCGAGAAAAAAACAACGTTTGCAGGCCTGGCAGACACTGCAGGAACGGCAATCCACGGCGGCACt                                     <  1:2881423/100‑1 (MQ=255)
                                                              aCGCAGAAAGTTGACATTGCCCTGAACAGTTGGCGAGAAAAAAACAACGTTTGCAGGCCTGGCAGACACTGCAGGAACGGCAATCCACGGCGGCACTGCt                                  <  1:941493/100‑1 (MQ=255)
                                                               cGCAGAAAGTTGACATTGCCCTGAACAGTTGGCGAGAAAAAAACAACGTTTGCAGGCCTGCCAGACACTGCAGGAACGGCAATCCACGGCGGCACTGCt                                  >  2:2059751/1‑99 (MQ=255)
                                                                 cAGAAAGTTGACATTGCCCTGAACAGTTGGCGAGAAAAAAACAACGTTTGCAGGCCTGGCAGACACTGCAGGAACGGCAATCCACGGCGGCACTGCTTGc                               >  1:465681/1‑100 (MQ=255)
                                                                 cAGAAAGTTGACATTGCCCTGAACAGTTGGCGAGAAAAAAACAACGTTTGCAGGCCTGGCAGACACTGCAGGAACGGCAATCCACGGCGGCACTGCTTGc                               >  1:582080/1‑100 (MQ=255)
                                                                 cAGAAAGTTGACATTGCCCTGAACAGTTGGCGAGAAAAAAACAACGTTTGCAGGCCTGGCAGACACTGCAGGAACGGCAATCCACGGCGGCACTGCTTGc                               <  1:757984/100‑1 (MQ=255)
                                                                 cAGAAAGTTGACATTGCCCTGAACAGTTGGCGAGAAAAAAACAACGTTTGCAGGCCTGGCAGACACTGCAGGAACGGCAATCCACGGCGGCACTGCTTGc                               >  1:1644437/1‑100 (MQ=255)
                                                                 cAGAAAGTTGACATTGCCCTGAACAGTTGGCGAGAAAAAAACAACGTTTGCAGGCCTGGCAGACACTGCAGGAACGGCAATCCACGGCGGCACTGCTTGc                               >  1:1093461/1‑100 (MQ=255)
                                                                 cAGAAAGTTGACATTGCCCTGAACAGTTGGCGAGAAAAAAACAACGTTTGCAGGCCTGGCAGACACTGCAGGAACGGCAATCCACGGCGGCACTGCTTGc                               <  1:2846328/100‑1 (MQ=255)
                                                                   gAAAGTTGACATTGCCCTGAACAGTTGGCGAGAAAAAAACAACGTTTGCAGGCCTGGCAGACACTGCAGGAACGGCAATCCACGGCGGCACTGCTTGCAg                             <  1:1120020/100‑1 (MQ=255)
                                                                    aaaGTTGACATTGCCCTGAACAGTTGGCGAGAAAAAAACAACGTTTGCAGGCCTGGCAGACACTGCAGGAACGGCAATCCACGGCGGCACTGCTTGCAGa                            <  2:1644428/100‑1 (MQ=255)
                                                                    aaaGTTGACATTGCCCTGAACAGTTGGCGAGAAAAAAACAACGTTTGCAGGCCTGGCAGACACTGCAGGAACGGCAATCCACGGCGGCACTGCTTGCAGa                            <  1:2320395/100‑1 (MQ=255)
                                                                    aaaGTTGACATTGCCCTGAACAGTTGGCGAGAAAAAAACAACGTTTGCAGGCCTGGCAGACACTGCAGGAACGGCAATCCACGGCGGCACTGCTTGCAGa                            >  2:2026441/1‑100 (MQ=255)
                                                                       gTTGACATTGCCCTGAACAGTTGGCGAGAAAAAAACAACGTTTGCAGGCCTGGCAGACACTGCAGGAACGGCAATCCACGGCGGCACTGCTTGCAGaaaa                         <  2:1868440/100‑1 (MQ=255)
                                                                       gTTGACATTGCCCTGAACAGTTGGCGAGAAAAAAACAACGTTTGCAGGCCTGGCAGACACTGCAGGAACGGCAATCCACGGCGGCACTGCTTGAAGaaaa                         <  2:1151271/100‑1 (MQ=255)
                                                                         tGACATTGCCCTGAACAGTTGGCGAGAAAAAAACAACGTTTGCAGGCCTGGCAGACACTGCAGGAACGGCAATCCACGGCGGCACTGCTTGCAGAAAAcc                       >  1:1648246/1‑100 (MQ=255)
                                                                         tGACATTGCCCTGAACAGTTGGCGAGAAAAAAACAACGTTTGCAGGCCTGGCAGACACTGCAGGAACGGCAATCCACGGCGGCACTGCTTGCAGAAAAcc                       >  1:915580/1‑100 (MQ=255)
                                                                         tGACATTGCCCTGAACAGTTGGCGAGAAAAAAACAACGTTTGCAGGCCTGGCAGACACTGCAGGAACGGCAATCCACGGCGGCACTGCTTGCAGAAAAcc                       <  1:817391/100‑1 (MQ=255)
                                                                          gACATTGCCCTGAACAGTTGGCGAGAAAAAAACAACGTTTGCAGGCCTGGCAGACACTGCAGGAACGGCAATCCACGGCGGCACTGCTTGCAGAAAACCg                      >  1:890234/1‑100 (MQ=255)
                                                                           aCATTGCCCTGAACAGTTGGCGAGAAAAAAACAACGTTTGCAGGCCTGGCAGACACTGCAGGAACGGCAATCCACGGCGGCACTGCTTGCAGAAAACCGc                     >  2:1998687/1‑100 (MQ=255)
                                                                              ttGCCCTGAACAGTTGGCGAGAAAAAAACAACGTTTGCAGGCCTGGCAGACACTGCAGGAACGGCAATCCACGGCGGCACTGCTTGCAGAAAACCGCCTc                  <  1:1998699/100‑1 (MQ=255)
                                                                               tGCCCTGAACAGTTGGCGAGAAAAAAACAACGTTTGCAGGCCTGGCAGACACTGCAGGAACGGCAATCCACGGCGGCACTGCTTGCAGAAAACCGCCTCg                 <  2:2030962/100‑1 (MQ=255)
                                                                                gCCCTGAACAGTTGGCGAGAAAAAAACAACGTTTGCAGGCCTGGCAGACACTGCAGGAACGGCAATCCACGGCGGCACTGCTTGCAGAAAACCGCCTCGa                >  2:584491/1‑100 (MQ=255)
                                                                                gCCCTGAACAGTTGGCGAGAAAAAAACAACGTTAGCAGGCCTGGCAGACACTGCAGGAACGGCAATCCACGGCGGCACTGCTTGCAGAAAACCGCCTCGa                >  2:1794965/1‑100 (MQ=255)
                                                                                 cccTGAACAGTTGGCGAGAAAAAAACAACGTTTGCAGGCCTGGCAGACACTGCAGGAACGGCAATCCACGGCGGCACTGCTTGCAGAAAACCGCCTCGAt               >  1:2932029/1‑100 (MQ=255)
                                                                                  ccTGAACAGTTGGCGAGAAAAAAACAACGTTTGCAGGCCTGGCAGACACTGCAGGAACGGCAATCCACGGCGGCACTGCTTGCAGAAAACCGCCTCGATc              <  1:1877809/100‑1 (MQ=255)
                                                                                   cTGAACAGTTGGCGAGAAAAAATCAACGTTTTCAGGCCTGGCAGACACTGCAGGAACGGCAATCCACGGCGGCACTGCTTGCAGAAAACCGCCTCGATCa             <  2:2007011/100‑1 (MQ=255)
                                                                                     gAACAGTTGGCGAGAAAAAAACAACGTTTGCAGGCCTGGCAGACACTGCAGGAACGGCAATCCACGGCGGCACTGCTTGCAGAAAACCGCCTCGATCAGa           >  2:1129900/1‑100 (MQ=255)
                                                                                        cAGTTGGCGAGAAAAAAACAACGTTTGCAGGCCTGGCAGACACTGCAGGAACGGCAATCCACGGCGGCACTGCTTGCAGAAAACCGCCTCGATCAGaaaa        >  1:383587/1‑100 (MQ=255)
                                                                                          gTTGGCGAGAAAAAAACAACGTTTGCAGGCCTGGCAGACACTGCAGGAACGGCAATCCACGGCGGCACTGCTTGCAGAAAACCGCCTCGATCAGAAAAAg      >  1:2162182/1‑100 (MQ=255)
                                                                                            tGGCGAGAAAAAAACAACGTTTGCAGGCCTGGCAGACACTGCAGGAACGGCAATCCACGGCGGCGCTGCTTGCAGAAAACCGCCTCGATCAGaaaa        >  1:402714/1‑96 (MQ=255)
                                                                                             ggCGAGAAAAAAACAACGTTTGCAGGCCTGGCAGACACTGCAGGAACGGCAATCCACGGCGGCACTGCTTGCAGAAAACCGCCTCGATCAGAAAAAgatg   >  1:188766/1‑100 (MQ=255)
                                                                                             ggCGAGAAAAAAACAACGTTTGCAGGCCTGGCAGACACTGCAGGAACGGCAATCCACGGCGGCACTGCTTGCAGAAAACCGCCTCGATCAGAAAAAgatg   <  1:1248355/100‑1 (MQ=255)
                                                                                                   |                                                                                               
AGCAGTTTATCCAGACGCTGGAAAAAGCCATTACTCAGCATCGCCAGCAACTTAATCAGTGGACGCAGAAAGTTGACATTGCCCTGAACAGTTGGCGAGAAAAAAAACAACGTTTGCAGGCCTGGCAGACACTGCAGGAACGGCAATCCACGGCGGCACTGCTTGCAGAAAACCGCCTCGATCAGAAAAAGATGG  >  NC_000913/2018154‑2018348

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: