BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,784,344	(T)_8→7	pseudogene (668/1374 nt)	ypjC ←	pseudogene

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,784,337	0	T	.	96.5%	756.4 / 18.9	174	pseudogene (675/1374 nt)	ypjC	pseudogene
Reads supporting (aligned to +/- strand): ref base T (5/1); new base . (79/89); total (84/90)
Fisher's exact test for biased strand distribution p-value = 1.08e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.74e-01

Only 100 of 195 total aligned reads displayed.

TAAAAACTTATAGCAACACTCATAAAAATTAAACAGAAGCTCTGAAGACCTTGTATTTTTATCAAATAATACCCCCTTGAACTCATTCACAAACGCATCTTTTTTTTCTTGAATATCTATGGGGTGTTCCTTTGACTCTGACAAAGATGAAATCTCATCTATTTTGTTTTCATATGAATTACGTGATTCCATACA  >  NC_000913/2784238‑2784432

  aaaaCTTATAGCAACACTCATAAAAATTAAACAGAAGCTCTGAAGACCTTGTATTTTTATCAAATAATACCCCCTTGAACTCATTCACAAACGCATCttt                                                                                               <  1:2928528/100‑1 (MQ=255)

  aaaaCTTATAGCAACACTCATAAAAATTAAACAGAAGCTCTGAAGACCTTGTATTTTTATCAAATAATACCCCCTTGAACTCATTCACAAACGCATCttt                                                                                               >  1:982072/1‑100 (MQ=255)

  aaaaCTTATAGCAACACTCATAAAAATTAAACAGAAGCTCTGAAGACCTTGTATTTTTATCAAATAATACCCCCTTGAACTCATTCACAAACGCATCttt                                                                                               >  2:1147609/1‑100 (MQ=255)

   aaaCTTATAGCAACACTCATAAAAATTAAACAGAAGCTCTGAAGACCTTGTATTTTTATCAAATAATACCCCCTTGAACTCATTCACAAACGCATCtttt                                                                                              >  1:936402/1‑100 (MQ=255)

      cTTATAGCAACACTCATAAAAATTAAACAGACGCTCTGAAGACCTTGTATTTTTATCAAATAATACCCCCTTGAACTCATTCACAAACGCATCttttttt                                                                                           <  1:722071/100‑1 (MQ=255)

      cTTATAGCAACACTCATAAAAATTAAACAGAAGCTCTGAAGACCTTGTATTTTTATCAAATAATACCCCCTTGAACTCATTCACAAACGCATCttttttt                                                                                           <  1:617505/100‑1 (MQ=255)

        tataGCAACACTCATAAAAATTAAACAGAAGCTCTGAAGACCTTGTATTTTTATCAAATAATACCCCCTTGAACTCATTCACAAACGCATCtttttttct                                                                                         <  2:2126344/100‑3 (MQ=255)

        tataGCAACACTCATAAAAATTAAACAGAAGCTCTGAAGACCTTGTATTTTTATCAAATAATACCCCCTTGAACTCATTCACAAACGCATCtttttttct                                                                                         <  2:2466428/100‑3 (MQ=255)

         ataGCAACACTCATAAAAATTAAACAGAAGCTCTGAAGACCTTGTATTTTTATCAAATAATACCCCCTTGAACTCATTCACAAACGCATCtttttttctt                                                                                        <  1:631663/100‑4 (MQ=255)

          taGCAACACTCATAAAAATTAAACAGAAGCTCTGAAGACCTTGTATTTTTATCAAATAATACCCCCTTGAACTCATTCACAAACGCATCtttttttcttg                                                                                       >  1:1233131/1‑96 (MQ=255)

          taGCAACACTCATAAAAATTAAACAGAAGCTCTGAAGACCTTGTATTTTTATCAAATAATACCCCCTTGAACTCATTCACAAACGCATCtttttttcttg                                                                                       <  1:1736641/100‑5 (MQ=255)

          taGCAACACTCATAAAAATTAAACAGAAGCTCTGAAGACCTTGTATTTTTATCAAATAATACCCCCTTGAACTCACTCACAAACGCATCtttttttctt                                                                                        >  2:2906850/1‑96 (MQ=255)

             cAACACTCATAAAAATTAAACAGAAGCTCTGAAGACCTTGTATTTTTATCAAATAATACCCCCTTGAACTCATTCACAAACGCATC‑TTTTTTTCTTGAat                                                                                   >  2:2847534/1‑100 (MQ=255)

              aaCACTCATAAAAATTAAACAGAAGCTCTGAAGACCTTGTATTTTTATCAAATAATACCCCCTTGAACTCATTCACAAACGCATC‑TTTTTTTCTTGAata                                                                                  >  1:2247724/1‑100 (MQ=255)

               acacTCATAAAAATTAAACAGAAGCTCTGAAGACCTTGTATTTTTATCAAATAATACCCCCTTGAACTCATTCACAAACGCATC‑TTTTTTTCTTGAatat                                                                                 <  1:1001889/100‑1 (MQ=255)

                cacTCATAAAAATTAAACAGAAGCTCTGAAGACCTTGTATTTTTATCAAATAATACCCCCTTGAACTCATTCACAAACGCATC‑TTTTTTTCTTGAATATc                                                                                <  1:11051/100‑1 (MQ=255)

                  cTCATAAAAATTAAACAGAAGCTCTGAAGACCTTGTATTTTTATCAAATAATACCCCCTTGAACTCATTCACAAACGCATC‑TTTTTTTCTTGAATATCTa                                                                              <  2:2796036/100‑1 (MQ=255)

                    taTAAAAATTAAACAGAAGCTCTGAAGACCTTGTATTTTTATCAAATAATACCCCCTTGAACTCATTCACAAACGCATC‑TTTTTTTCTTGAATATCTATg                                                                            <  2:1702153/99‑1 (MQ=255)

                     aaaaaaaTTAAACAGAAGCTCTGAAGACCTTGTATTTTTATCAAATAATACCCCCTTGAACTCATTCACAAACGCATC‑TTTTTTTCTTGAATATCTATgg                                                                           >  1:2771877/3‑100 (MQ=255)

                     aTAAAAATTAAACAGAAGCTCTGAAGACCTTGTATTTTTATCAAATAATACCCCCTTGAACTAATTCACAAACGCATC‑TTTTTTTCTTGAATATCTAt                                                                             >  1:1702164/1‑98 (MQ=255)

                      tAAAAATTAAACAGAAGCTCTGAAGACCTTGTATTTTTATCAAATAATACCCCCTTGAACTCATTCACAAACGCATC‑TTTTTTTCTTGAATATCTATtgg                                                                          >  1:2179915/1‑100 (MQ=255)

                      tAAAAATTAAACAGAAGCTCTGAAGACCTTGTATTTATATCAAATAATACCCCCTTGAACTCATTCACAAACGCATC‑TTTTTTTCTTGAATATCTATggg                                                                          >  1:2104745/1‑100 (MQ=255)

                       aaaaaTTAAACAGAAGCTCTGAAGACCTTGTATTTTTATCAAATAATACCCCCTTGAACTCATTCACAAACGCATC‑TTTTTTTCTTGAATATCTATgggg                                                                         <  2:1520168/100‑1 (MQ=255)

                       aaaaaTTAAACAGAAGCTCTGAAGACCTTGTATTTTTATCAAATAATACCCCCTTGAACTCATTCACAAACGCATC‑TTTTTTTCTTGAATATCTATgggg                                                                         <  1:2667043/100‑1 (MQ=255)

                       aaaaaTTAAACAGAAGCTCTGAAGACCTTGTATTTTTATCAAATAATACCCCCTTGAACTCATTCACAAACGCATC‑TTTTTTTCTTGAATATCTATgggg                                                                         <  1:2267814/100‑1 (MQ=255)

                       aaaaaTTAAACAGAAGCTCTGAAGACCTTGTATTTTTATCAAATAATACCCCCTTGAACTCATTCACAAACGCATC‑TTTTTTTCTTGAATATCTATgggg                                                                         <  2:399629/100‑1 (MQ=255)

                        aaaaTTAAACAGAAGCTCTGAAGACCTTGTATTTTTATCAAATAATACCCCCTTGAACTCATTCACAAACGCATC‑TTTTTTTCTTGAATATCTATGGGgt                                                                        >  1:2379698/1‑100 (MQ=255)

                        aaaaTTAAACAGAAGCTCTGAAGACCTTGTATTTTTATCAAATAATACCCCCTTGAACTCATTCACAAACGCATC‑TTTTTTTCTTGAATATCTATGGGgt                                                                        >  2:2748344/1‑100 (MQ=255)

                         aaaTTAAACAGAAGCTCTGAAGACCTTGTATTTTTATCAAATAATACCCCCTTGAACTCATTCACAAACGCATC‑TTTTTTTCTTGAATATCTATGGGgtg                                                                       <  1:2847550/100‑1 (MQ=255)

                         aaaTTAAACAGAAGCTCTGAAGACCTTGTATTTTTATCAAATAATACCCCCTTGAACTCATTCACAAACGCATC‑TTTTTTTCTTGAATATCTATGGGgtg                                                                       >  1:2907248/1‑100 (MQ=255)

                             tAAACAGAAGCTCTGAAGACCTTGTATTTTTATCAAATAATACCCCCTTGAACTCATTCACAAACGCATC‑TTTTTTTCTTGAATATCTATGGGGTGTTcc                                                                   <  1:446299/100‑1 (MQ=255)

                              aaaCAGAAGCTCTGAAGACCTTGTATTTTTATCAAATAATACCCCCTTGAACTCATTCACAAACGCATC‑TTTTTTTCTTGAATATCTATGGGGTGTTCCt                                                                  >  1:1514649/1‑100 (MQ=255)

                              aaaCAGAAGCTCTGAAGACCTTGTATTTTTATCAAATAATACCCCCTTGAACTCATTCACAAACGCATC‑TTTTTTTCTTGAATATCTATGGGGTGTTCCt                                                                  <  1:1082624/100‑1 (MQ=255)

                               aaCAGAAGCTCTGAAGACCTTGTATTTTTATCAAATAATACCCCCTTGAACTCATTCACAAACGCATC‑TTTTTTTCTTGAATATCTATGGGGTGTTCCtt                                                                 <  2:1424777/100‑1 (MQ=255)

                                aCAGAAGCTCTGAAGACCTTGTATTTTTATCAAATAATACCCCCTTGAACTCATTCACAAACGCATC‑TTTTTTTCTTGAATATCTATGGGGTGTTCCttt                                                                <  2:2416784/100‑1 (MQ=255)

                                 cAGAAGCTCTGAAGACCTTGTATTTTTATCAAATAATACCCCCTTGAACTCATTCACAAACGCATC‑TTTTTTTCTTGAATATCTATGGGGTGTTCCTTTg                                                               >  1:946590/1‑100 (MQ=255)

                                 cAGAAGCTCTGAAGACCTTGTATTTTTATCAAATAATACCCCCTTGAACTCATTCACAAACGCATC‑TTTTTTTCTTGAATATCTATGGGGTGTTCCTTTg                                                               <  1:2797218/100‑1 (MQ=255)

                                 cAGAAGCTCTGAAGACCTTGTATTTTTATCAAATAATACCCCCTTGAACTCATTCACAAACGCATC‑TTTTTTTCTTGAATATCTATGGGGTGTTCCTTTg                                                               <  1:2215173/100‑1 (MQ=255)

                                  aGAAGCTCTGAAGGCCTTGTATTTTTATCAAGTAATACCCCCTTGAACTCATTCACAAACGCATC‑TTTTTTTCTTGAATATCTATGGGGTGTTCCTTTGa                                                              >  1:2005328/1‑100 (MQ=255)

                                  aGAAGCTCTGAAGACCTTGTATTTTTATCAAATAATACCCCCTTGAACTCATTCACAAACGCATC‑TTTTTTTCTTGAATATCTATGGGGTGTTCCTTTGa                                                              <  2:2498707/100‑1 (MQ=255)

                                    aaGCTCTGAAGACCTTGTATTTTTATCAAATAATACCCCCTTGAACTCATTCACAAACGCATC‑TTTTTTTCTTGAATATCTATGGGGTGTTCCTTTGAct                                                            <  2:1938051/100‑1 (MQ=255)

                                     aGCTCTGAAGACCTTGTATTTTTATCAAATAATACCCCCTTGAACTCATTCACAAACGCATC‑TTTTTTTCTTGAATAGCGATGGGGTGTTCCTTTGAct                                                            <  2:1405431/99‑1 (MQ=255)

                                       ctctGAAGACCTTGTATTTTTATCAAATTATACCCCCTTGAACTCATTCACAAACGCATC‑TTTTTTTCTTGAATATCTATGGGGTGTTCCTTTGACTCTg                                                         <  2:2147243/100‑1 (MQ=255)

                                       ctctGAAGACCTTGTATTTTTATCAAATAATACCCCCTTGAACTCATTCACAAACGCATC‑TTTTTTTCTTGAATATCTATGGGGTGTTCCTTTGACTCTg                                                         >  2:1361965/1‑100 (MQ=255)

                                           gAAGACCTTGTATTTTTATCAAATAATACCCCCTTGAACTCATTCACAAACGCATC‑TTTTTTTCTTGAATATCTATGGGGTGTTCCTTTGActctagatc                                                     >  1:2122829/1‑95 (MQ=255)

                                           gAAGACCTTGTATTTTTATCAAATAATACCCCCTTGAACTCATTCACAAACGCATC‑TTTTTTTCTTGAATATCTATGGGGTGTTCCTTTGActctagatc                                                     >  1:1416822/1‑95 (MQ=255)

                                           gAAGACCTTGTATTTTTATCAAATAATACCCCCTTGAACTCATTCACAAACGCATC‑TTTTTTTCTTGAATATCTATGGGGTGTTCCTTTGACTCTGACaa                                                     <  1:1763832/100‑1 (MQ=255)

                                            aaGACCTTGTATTTTTATCAAATAATACCCCCTTGAACTCATTCACAAACGCATC‑TTTTTTTCTTGAATATCTATGGGGTGTTCCTTTGACTCTGACaaa                                                    <  1:1813299/100‑1 (MQ=255)

                                               aCCTTGTATTTTTATCAAATAATACCCCCTTGAACTCATTCACAAACGCATCTTTTTTTTCTTGAATATCTATGGGGTGTTCCTTTGACTCTGACAAAGa                                                  <  2:1232043/100‑1 (MQ=255)

                                               aCCTTGTATTTTTATCAAATAATACCCCCTTGAACTCATTCACAAACGCATC‑TTTTTTTCTTGAATATCTATGGGGTGTTCCTTTGACTCTGACAAAGAt                                                 <  1:273747/100‑1 (MQ=255)

                                                ccTTGTATTTTTATCAAATAATACCCCCTTGAACTCATTCACAAACGCATC‑TTTTTTTCTTGAATATCTATGGGGTGTTCCTTTGACTCTGACAAAGATg                                                >  1:1362949/1‑100 (MQ=255)

                                                 cTTGTATTTTTATCAAATAATACCCCCTTGAACTCATTCACAAACGCATC‑TTTTTTTCTTGAATATCTATGGGGTGTTCCTTTGACTCTGACAAAGATGa                                               >  2:1255856/1‑100 (MQ=255)

                                                   tGTATTTTTATCAAATAATACCCCCTTGAACTCATTCACAAACGCATC‑TTTTTTTCTTGAATATCTATGGGGTGTTCTTTTGACTCTGACAAAGATGaaa                                             >  2:1832627/1‑100 (MQ=255)

                                                    gTATTTTTATCAAATAATACCCCCTTGAACTCATTCACAAACGCATC‑TTTTTTTCTTGAATATCTATGGGGTGTTCCTTTGACTCTGACAAAGATGAAAt                                            <  2:204342/100‑1 (MQ=255)

                                                       tttttATCAAATAATACCCCCTTGAACTCATTCACAAACGCATC‑TTTTTTTCTTGAATATCTATGGGGTGTTCCTTTGACTCTGACAAAGATGAAAtctc                                         >  2:367744/1‑100 (MQ=255)

                                                        ttttATCAAATAATACCCCCTTGAACTCATTCACAAACGCATC‑TTTTTTTCTTGAATATCTATGGGGTGTTCCTTTGACTCTGACAAAGATGAAATCTCa                                        <  2:2247712/100‑1 (MQ=255)

                                                          ttATCAAATAATACCCCCTTGAACTCATTCACAAACGCATC‑TTTTTTTCTTGAATATCTATGGGGTGTTCCTTTGACTCTGACAAAGATGAAATCTCATc                                      <  2:2104733/100‑1 (MQ=255)

                                                          ttATCAAATAATACCCCCTTGAACTCATTCACAAACGCATC‑TTTTTTTCTTGAATATCTATGGGGTGTTCCTTTGACTCTGACAAAGATGAAATCTCATc                                      <  2:495785/100‑1 (MQ=255)

                                                           tATCAAATAATACCCCCTTGAACTCATTCACAAACGCATC‑TTTTTTTCTTGAATATCTATGGGGTGTTCCTTTGACTCTGACAAAGATGAAATCTCATCt                                     <  2:2961645/100‑1 (MQ=255)

                                                           tATCAAATAATACCCCCTTGAACTCATTCACAAACGCATC‑TTTTTTTCTTGAATATCTATGGGGTGTTCCTTTGACTCTGACAAAGATGAAATCTCATCt                                     >  1:710716/1‑100 (MQ=255)

                                                           tATCAAATAATACCCCCTTGAACTCATTCACAAACGCATC‑TTTTTTTCTTGAATATCTATGGGGTGTTCCTTTGACTCTGACAAAGATGAAATCTCATCt                                     >  1:1851431/1‑100 (MQ=255)

                                                           tATCAAATAATACCCCCTTGAACTCATTCACAAACGCATC‑TTTTTTTCTTGAATATCTATGGGGTGTTCCTTTGACTCTGACAAAGATGAAATCTCATCt                                     <  1:400982/100‑1 (MQ=255)

                                                           tATCAAATAATACCCCCTTGAACTCATTCACAAACGCATC‑TTTTTTTCTTGAATATCTATGGGGTGTTCCTTTGACTCTGACAAAGATGAAATCTCATCt                                     >  1:2066471/1‑100 (MQ=255)

                                                            aTCAAATAATACCCCCTTGAACTCATTCACAAACGCATC‑TTTTTTTCTTGAATATCTATGGGGTGTTCCTTTGACTCTGACAAAGATGAAATCTCATCTa                                    >  2:914828/1‑100 (MQ=255)

                                                            aTCAAATAATACCCCCTTGAACTCATTCACAAACGCATC‑TTTTTTTCTTGAATATCTATGGGGTGTTCCTTTGACTCTGACAAAGATGAAATCTCATCTa                                    >  1:1662327/1‑100 (MQ=255)

                                                             tCAAATAATACCCCCTTGAACTCATTCACAAACGCATC‑TTTTTTTCTTGAATATCTATGGGGTGTTCCTTTGACTCTGACAAAGATGAAATCTCATCTAt                                   >  1:2917251/1‑100 (MQ=255)

                                                              cAAATAATACCCCCTTGAACTCATTCACAAACGCATC‑TTTTTTTCTTGAATATCTATGGGGTGTTCCTTTGACTCTGACAAAGATGAAATCTCATCTAtt                                  >  1:832568/1‑100 (MQ=255)

                                                              cAAATAATACCCCCTTGAACTCATTCACAAACGCATC‑TTTTTTTCTTGAATATCTATGGGGTGTTCCTTTGACTCTGACAAAGATGAAATCTCATCTAtt                                  >  1:2532152/1‑100 (MQ=255)

                                                                  taataCCCCCTTGAACTCATTCACAAACGCATC‑TTTTTTTCTTGAATATCTATGGGGTGTTCCTTTGACTCTGACAAAGATGAAATCTCATCTATTTTGt                              <  2:946586/100‑1 (MQ=255)

                                                                    ataCCCCCTTGAACTCATTCACAAACGCATC‑TTTTTTTCTTGAATATCTATGGGGTGTTCCTTTGACTCTGACAAAGATGAAATCTCATCTATTTTGttt                            <  2:2450054/100‑1 (MQ=255)

                                                                       cccccTTGAACTCATTCACAAACGCATC‑TTTTTTTCTTGAATATCTATGGGGTGTTCCTTTGACTCTGACAAAGATGAAATCTCATCTATTTTGTTTTCa                         >  2:2575409/1‑100 (MQ=255)

                                                                        ccccTGGAACTCATTCACAAACGCATC‑TTTTTTTCTTGAATATCTATGGGGTGTTCCTTTGACTCTGACAAAGATGAAATCTCATCTATTTTGTTTTCat                        <  2:1990537/100‑1 (MQ=255)

                                                                         cccTTGAGCTCATTCACAAACGCATCTTTTTTTT‑TTTTTTATCTATGGGGTGTTCCTTTGACTCTGACAAAGATGAAATCTCATCTATTTTGTTTTCat                        >  2:1574461/1‑99 (MQ=255)

                                                                         cccTTGAACTCATTCACAAACGCATC‑TTTTTTTCTTGAATATCTATGGGGTGTTCCTTTGACTCTGACAAAGATGAAATCTCATCTATTTTGTTTTCata                       <  2:839189/100‑1 (MQ=255)

                                                                         cccTTGAACTCATTCACAAACGCATC‑TTTTTTTCTTGAATATCTATGGGGTGTTCCTTTGACTCTGACAAAGATGAAATCTCATCTATTTTGTTTTCata                       >  1:846006/1‑100 (MQ=255)

                                                                             tGAACTCATTCACAAACGCATC‑TTTTTTTCTTGAATATCTATGGGGTGTTCCTTTGACTCTGACAAAGATGAAATCTCATCTATTTTGTTTTCATATGaa                   <  2:1528252/100‑1 (MQ=255)

                                                                             tGAACTCATTCACAAACGCATC‑TTTTTTTCTTGAATATCTATGGGGTGTTCCTTTGACTCTGACAAAGATGAAATCTCATCTATTTTGTTTTCATATGaa                   <  1:2333186/100‑1 (MQ=255)

                                                                             tGAACTCATTCACAAACGCATC‑TTTTTTTCTTGAATATCTATGGGGTGTTCCTTTGACTCTGACAAAGATGAAATCTCATCTATTTTGTTTTCATATGaa                   <  1:378648/100‑1 (MQ=255)

                                                                              gAACTCATTCACAAACGCATC‑TTTTTTTCTTGAATATCTATGGGGTGTTCCTTTGACTCTGACAAAGATGAAATCTCATCTATTTTGTTTTCATATGaaa                  >  2:2333172/1‑99 (MQ=255)

                                                                              gAACTCATTCACAAACGCATC‑TTTTTTTCTTGAATATCTATGGGGTGTTCCTTTGACTCTGACAAAGATGAAATCTCATCTATTTTGTTTTCATATGTAt                  >  2:1879511/1‑100 (MQ=255)

                                                                              gAACTCATTCACAAACGCATC‑TGTTTTTCTTGAATATCTATGGGGTGTTCCTTTGACTCTGACAAAGATGAAATCTCATCTATTTTGTTTTCATATGAAt                  >  2:1731935/1‑100 (MQ=255)

                                                                               aaCTCATTCACAAACGCATC‑TTTTTTTCTTGAATATCTATGGGGTGTTCCTTTGACTCTGACAAAGATGAAATCTCATCTATTTTGTTTTCATATGAAtt                 <  2:631589/100‑1 (MQ=255)

                                                                               aaCTCATTCACAAACGCATC‑TTTTTTTCTTGAATATCTATGGGGTGTTCCTTTGACTCTGACAAAGATGAAATCTCATCTATTTTGTTTTCATATGAAtt                 >  1:1924420/1‑100 (MQ=255)

                                                                                 cTCATTCACAAACGCATCTTTTTTTT‑TTTTTTTTCTATGGGGTGTTCCTTTGACTCTGACAAAGATGAAATCTCATCTATTTTGTTTTCATATCAAtt                 >  2:2462660/1‑98 (MQ=255)

                                                                                 cTCATTCACAAACGCATCTTTTTTTT‑TTTTTTTTCTATGCGGTGTTCCTTTTACTCTTACAAAGTTGAATTCTCATCTATTTTGTTTTCATATGAAtt                 >  2:743624/1‑98 (MQ=255)

                                                                                 cTCATTCACAAACGCATC‑TTTTTTTCTTGAATATCTATGGGGTGTTCCTTTGACTCTGACAAAGATGAAATCTCATCTCTTTTGTTTTCATATGAATTAc               >  1:445250/1‑100 (MQ=255)

                                                                                   cATTCACAAACGCATC‑TTTTTTTCTTGAATATCTATGGGGTGTTCCTTTGACTCTGACAAAGATGAAATCTCATCTATTTTGTTTTCATATGAATTACGt             >  1:684841/1‑100 (MQ=255)

                                                                                    aTTCACAAACGCATC‑TTTTTTTCTTGAATATCTATGGGGTGTTCCTTTGACTCTGACAAAGATGAAATCTCATCTATTTTGTTTTCATATGAATTACGTg            <  2:2753354/100‑1 (MQ=255)

                                                                                    aTTCACAAACGCATC‑TTTTTTTCTTGAATATCTATGGGGTGTTCCTTTGACTCTGACAAAGATGAAATCTCATCTATTTTGTTTTCATATGAATTACGTg            >  2:2664743/1‑100 (MQ=255)

                                                                                    aTTCACAAACGCATC‑TTTTTTTCTTGAATATCTATGGGGTGTTCCTTTGACTCTGACAAAGATGAAATCTCATCTATTTTGTTTTCATATGAATTACGTg            <  1:1886558/100‑1 (MQ=255)

                                                                                    aTTCACAAACGCATC‑TTTTTTTATTGAATATCTATGGGGTGTTCCTTTGACTCTGACAAAGATGAAATCTCATCTATTTTGTTTTCATATGAATTTCg              >  2:2116490/1‑98 (MQ=255)

                                                                                      tCACAAACGCATC‑TTTTTTTCTTGAATATCTATGGGGTGTTCCTTTGACTCTGACAAAGATGAAATCTCATCTATTTTGTTTTCATATGAATTACGTGAt          >  1:2615154/1‑100 (MQ=255)

                                                                                       cacaAACGCATC‑TTTTTTTCTTGAATATCTATGGGGTGTTCCTTTGACTCTGACAAAGATGAAATCTCATCTATTTTGTTTTCATATGAATTACGTGAtt         >  1:2810034/1‑100 (MQ=255)

                                                                                       cacaAACGCATC‑TTTTTTTCTTGAATATCTATGGGGTGTTCCTTTGACTCTGACAAAGATGAAATCTCATCTATTTTGTTTTCATATGAATTACGTGAtt         >  2:1631408/1‑100 (MQ=255)

                                                                                        acaAACGCATC‑TTTTTTTCTTGAATATCTATGGGGTGTTCCTTTGACTCTGACAAAGATGAAATCTCATCTATTTTGTTTTCATATGAATTACGTGATTc        <  2:2023103/100‑1 (MQ=255)

                                                                                          aaaCGCATCTTTTTTTT‑TTTTTTTTCTATGGGGAGTTCCTTTGACTCTGACAAAGATGAAATCTCATCTATTTTGTTTTCATATGAATTACGTGATTcc       >  2:8808/1‑99 (MQ=255)

                                                                                          aaaCGCATC‑TTTTTTTCTTGAATATCTATGGGGTGTTCCTTTGACTCTGACAAAGATGAAATCTCATCTATTTTGTTTTCATATGAATTACGTGATTCCa      <  1:1456409/100‑1 (MQ=255)

                                                                                            aCGCATC‑TTTTTTTCTTGAATATCTATGGGGTGTTCCTTTGACTCTGACAAAGATGAAATCTCATCTATTTTGTTTTCATATGAATTACGTGATTCCATa    <  1:1400501/100‑1 (MQ=255)

                                                                                              gCATC‑TTTTTTTCTTGAATATCTATGGGGTGTTCCTTTGACTCTGACAAAGATGAAATCTCATCTATTTTGTTTTCATATGAATTACGTGATTCCATACa  <  1:2487786/100‑1 (MQ=255)

                                                                                              gCATC‑TTTTTTTCTTGAATATCTATGGGGTGTTCCTTTGACTCTGACAAAGATGAAATCTCATCTATTTTGTTTTCATATGAATTACGTGATTCCATACa  <  1:1031652/100‑1 (MQ=255)

TAAAAACTTATAGCAACACTCATAAAAATTAAACAGAAGCTCTGAAGACCTTGTATTTTTATCAAATAATACCCCCTTGAACTCATTCACAAACGCATCTTTTTTTTCTTGAATATCTATGGGGTGTTCCTTTGACTCTGACAAAGATGAAATCTCATCTATTTTGTTTTCATATGAATTACGTGATTCCATACA  >  NC_000913/2784238‑2784432

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`