Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,800,268 (T)8→7 coding (698/699 nt) waaY ← lipopolysaccharide core biosynthesis protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,800,2610T.98.2% 487.4 / 2.1 108intergenic (‑65/+6)waaZ/waaYlipopolysaccharide KdoIII transferase; lipopolysaccharide core biosynthesis protein/lipopolysaccharide core biosynthesis protein
Reads supporting (aligned to +/- strand):  ref base T (1/1);  new base . (54/52);  total (55/53)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.88e-01

Only 100 of 124 total aligned reads displayed.

ACATCTTTTTTGTCAATGTATCTAATATTCTTCATGATAAACCTGTGAAATAAATAACTCCGCTTAAAACTGTCCTGGTGAAGACATGTAATTGTGGGATTTTTTTTAGCGCGCTGGTTTCCCTTTCAAACGCCGCATAAAATTGCGCATTTTTTTACGATATACTAAAAGATAATAGCCTAGATCTCTAATCTC  >  NC_000913/3800162‑3800356
                                                                                                   |                                                                                               
ncATCTTTTTTGTCAATGTATCTAATATTCTTCATGATAAACCTGTGAAATAAATAACTCCGCTTAAAACTGTCCTGGTGAAGACATGTAATTGTGGGAt                                                                                                 >  1:937218/2‑100 (MQ=255)
aCATCTTTTTTGTCAATGTATCTAATATTCTTCATGATAAACCTGTGAAATAAATAACTCCGCTTAAAACTGTCCTGGTGAAGACATGTAATTGTGGGAt                                                                                                 >  1:2686488/1‑100 (MQ=255)
 cATCTTTTTTGTCAATGTATCTAATATTCTTCATGATAAACCTGTGAAATAAATAACTCCGCTTAAAACTGTCCTGGTGAAGACATGTAATTGTGGGAtt                                                                                                <  2:487197/100‑1 (MQ=255)
 cATCTTTTTTGTCAATGTATCTAATATTCTTCATGATAAACCTGTGAAATAAATAACTCCGCTTAAAACTGTCCTGGTGAAGACATGTAATTGTGGGAtt                                                                                                >  1:1498200/1‑100 (MQ=255)
  aTCTTTTTTGTCAATGTATCTAATATTCTTCATGATAAACCTGTGAAATAAATAACTCCGCTTAAAACTGTCCTGGTGAAGACATGTAATTGTGGGAttt                                                                                               >  1:2448843/1‑100 (MQ=255)
   tCTTTTTTGTCAATGTATCTAATATTCTTCATGATAAACCTGTGAAATAAATAACTCCGCTTAAAACTGTCCTGGTGAAGACATGTAATTGTGGGAtttt                                                                                              >  1:1424176/1‑100 (MQ=255)
      tttttGTCAATGTATCTAATATTCTTCATGATAAACCTGTGAAATAAATAACTCCGCTTAAAACTGTCCTGGTGAAGACATGTAATTGTGGGAttttttt                                                                                           <  1:1353408/100‑1 (MQ=255)
      tttttGTCAATGTATCTAATATTCTTCATGATAAACCTGTGAAATAAATAACTCCGCTTAAAACTGTCCTGGTGAAGACATGTAATTGTGGGAttttttt                                                                                           <  1:1986958/100‑1 (MQ=255)
      tttttGTCAATGTATCTAATATTCTTCATGATAAACCTGTGAAATAAATAACTCCGCTTAAAACTGTCCTGGTGAAGACATGTAATTGTGGGAttttttt                                                                                           >  1:384993/1‑100 (MQ=255)
      tttttGTCAATGTATCTAATATTCTTCATGATAAACCTGTGAAATAAATAACTCCGCTTAAAACTGTCCTGGTGAAGACATGTAATTGTGGGAttttttt                                                                                           >  1:125158/1‑100 (MQ=255)
      tttttGTCAATGTATCTAATATTCTTCATGATAAACCTGTGAAATAAATAACTCCGCTTAAAACTGTCCTGGTGAAGACATGTAATTGTGGGAttttttt                                                                                           <  2:2265777/100‑1 (MQ=255)
      tttttGTCAATGTATCTAATATTCTTCATGATAAACCTGTGAAATAAATAACTCCGCTTAAAACTGTCCTGGTGAAGACATGTAATTGTGGGAttttttt                                                                                           >  2:2446945/1‑100 (MQ=255)
          tGTCAATGTATCTAATATTCTTCATGATAAACCTGTGAAATAAATAACTCCGCTTAAAACTGTCCTGGTGAAGACATGTAATTGTGGGAtttttttagcg                                                                                       <  1:2743134/100‑5 (MQ=255)
            tCAATGTATCTAATATTCTTCATGATAAACCTGTGAAATAAATAACTCCGCTTAAAACTGTCCTGGTGAAGACATGTAATTGTGGGA‑TTTTTTTAgcgcg                                                                                    <  1:602101/100‑1 (MQ=255)
             cAATGTATCTAATATTCTTCATGATAAACCTGTGAAATAAATAACTCCGCTTAAAACTGTCCTGGTGAAGACATGTAATTGTGGGA‑TTTTTTTAgcgcgc                                                                                   >  1:2734072/1‑100 (MQ=255)
              aaTGTATCTAATATTCTTCATGATAAACCTGTGAAATAAATAACTCCGCTTAAAACTGTCCTGGTGAAGACATGTAATTGTGGGA‑TTTTTTTAGCGCGCt                                                                                  <  1:1127154/100‑1 (MQ=255)
              aaTGTATCTAATATTCTTCATGATAAACCTGTGAAATAAATAACTCCGCTTAAAACTGTCCTGGTGAAGACATGTAATTGTGGGA‑TTTTTTTAGCGCGCt                                                                                  >  2:851949/1‑100 (MQ=255)
                  tATCTAATATTCTTCATGATAAACCTGTGAAATAAATAACTCCGCTTAAAACTGTCCTGGTGAAGACATGTAATTGTGGGA‑TTTTTTTAGCGCGCTGGtt                                                                              >  2:113669/1‑100 (MQ=255)
                   aTCTAATATTCTTCATGATAAACCTGTGAAATAAATAACTCCGCTTAAAACTGTCCTGGTGAAGACATGTAATTGTGGGA‑TTTTTTTAGCGCGCTGGttt                                                                             >  1:1946441/1‑100 (MQ=255)
                   aTCTAATATTCTTCATGATAAACCTGTGAAATAAATAACTCCGCTTAAAACTGTCCTGGTGAAGACATGTAATTGTGGGA‑TTTTTTTAGCGCGCTGGttt                                                                             <  1:1147586/100‑1 (MQ=255)
                   aTCTAATATTCTTCATGATAAACCTGTGAAATAAATAACTCCGCTTAAAACTGTCCTGGTGAAGACATGTAATTGTGGGA‑TTTTTTTAGCGCGCTGGttt                                                                             >  1:1131406/1‑100 (MQ=255)
                   aTCTAATATTCTTCATGATAAACCTGTGAAATAAATAACTCCGCTTAAAACTGTCCTGGTGAAGACATGTAATTGTGGGA‑TTTTTTTAGCACGCTGGttt                                                                             <  2:345110/100‑1 (MQ=255)
                    tCTAATATTCTTCATGATAAACCTGTGAAATAAATAACTACGCTTAAAACTGTCCTGGTGAAGACATGTAATTGTGGGA‑TTTTTTTAGCGCGCTGGTTTc                                                                            >  2:2087917/1‑100 (MQ=255)
                     cTAATATTCTTCATGATAAACCTGTGAAATAAATAACTCCGCTTAAAACTGTCCTGGTGAAGACATGTAAATGTGGGA‑TTTTTTTAGCGCGCTGGTTTcc                                                                           >  1:589519/1‑100 (MQ=255)
                     cTAATATTCTTCATGATAAACCTGTGAAATAAATAACTCCGCTGAAAACTGTCCTGGTGAAGACATGTAATTGTGGGA‑TTTTTTTAGCGCGCTGGTTTcc                                                                           <  2:2531006/100‑1 (MQ=255)
                      tAATATTCTTCATGATAAACCTGTGAAATAAATAACTCCGCTTAAAACTGTCCTGGTGAAGACATGTAATTGTGGGA‑TTTTTTTAGCGCGCTGGTTTccc                                                                          >  2:176496/1‑100 (MQ=255)
                      tAATATTCTTCATGATAAACCTGTGAAATAAATAACTCCGCTTAAAACTGTCCTGGTGAAGACATGTAATTGTGGGA‑TTTTTTTAGCGCGCTGGTTTccc                                                                          >  1:2921905/1‑100 (MQ=255)
                       aaTATTCTTCATGATAAACCTGTGAAATAAATAACTCCGCTTAAAACTGTCCTGGTGAAGACATGTAATTGTGGGA‑TTTTTTTAGCGCGCTGGTTTCCCt                                                                         >  2:2336472/1‑100 (MQ=255)
                       aaTATTCTTCATGATAAACCTGTGAAATAAATAACTCCGCTTAAAACTGTCCTGGTGAAGACATGTAATTGTGGGA‑TTTTTTTAGCGCGCTGGTTTCCCt                                                                         <  2:1675848/100‑1 (MQ=255)
                       aaTATTCTTCATGATAAACCTGTGAAATAAATAACTCCGCTTAAAACTGTCCTGGTGAAGACATGTAATTGTGGGA‑TTTTTTTAGCGCGCTGGTTTCCCt                                                                         >  2:1203514/1‑100 (MQ=255)
                       aaTATTCTTCATGATAAACCTGTGAAATAAATAACTCCGCTTAAAACTGTCCTGGTGAAGACATGTAATTGTGGGA‑TTTTTTTAGCGCGCTGGTTTCCCt                                                                         >  2:628319/1‑100 (MQ=255)
                       aaTATTCTTCATGATAAACCTGTGAAATAAATAACTCCGCTTAAAACTGTCCTGGTGAAGACATGTAATTGTGGGA‑TTTTTTTAGCGCGCTGGTTTCCCt                                                                         >  1:337873/1‑100 (MQ=255)
                        atatTCTTCATGATAAACCTGTGAAATAAATAACTCCGCTTAAAACTGTCCTGGTGAAGACATGTAATTGTGGGA‑TTTTTTTAGCGCGCTGGTTTCCCtt                                                                        >  1:565235/1‑100 (MQ=255)
                         tatTCTTCATGATAAACCTGTGAAATAAATAACTCCGCTTAAAACTGTCCTGGTGAAGACATGTAATTGTGGGA‑TTTTTTTAGCGCGCTGGTTTCCCt                                                                         >  1:2882418/1‑98 (MQ=255)
                         tatTCTTCAGGATAAACCTTGGAAATAAAGAACTCCGCTTAAATCTGTCCTGGTGAAGACATGTAATTGTGTGA‑TTTTTTTAGCGCGCTGGTTTCCCttt                                                                       <  2:575630/100‑1 (MQ=255)
                          atTCTTCATGATAAACCTGTGAAATAAATAACTCCGCTTAAAACTGTCCTGGTGAAGACATGTAATTGTGGGA‑TTTTTTTAGCGCGCTGGTTTCCCTTTc                                                                      >  2:334114/1‑100 (MQ=255)
                          atTCTTCATGATAAACCTGTGAAATAAATAACTCCGCTTAAAACTGTCCTGGTGAAGACATGTAATTGTGGGA‑TTTTTTTAGCGCGCTGGTTTCCCTTTc                                                                      <  1:1102137/100‑1 (MQ=255)
                              ttcATGATAAACCTGTGAAATAAATAACTCCGCTTAAAACTGTCCTGGTGAAGACATGTAATTGTGGGA‑TTTTTTTAGCGCGCTGGTTTCCCTTTCAAAc                                                                  <  1:184522/100‑1 (MQ=255)
                                 aTGATAAACCTGTGAAATAAATAACTCCGCTTAAAACTGTCCTGGTGAAGACATGTAATTGTGGGA‑TTTTTTTAGCGCGCTGGTTTCCCTTTCAAAcgcc                                                               <  1:1956447/100‑1 (MQ=255)
                                 aTGATAAACCTGTGAAATAAATAACTCCGCTTAAAACTGTCCTGGTGAAGACATGTAATTGTGGGA‑TTTTTTTAGCGCGCTGGTTTCCCTTTCAAAcgcc                                                               >  1:2972965/1‑100 (MQ=255)
                                 aTGATAAACCTGTGAAATAAATAACTCCGCTTAAAACTGTCCTGGTGAAGACATGTAATTGTGGGA‑TTTTTTTAGCGCGCTGGTTTCCCTTTCAAAcgcc                                                               <  1:1152011/100‑1 (MQ=255)
                                 aTGATAAACCTGTGAAATAAATAACTCCGCTTAAAACTGTCCTGGTGAAGACATGTAATTGTGGGA‑TTGTTTTAGCGCGCTGGTTTCCCTTTCATAcgc                                                                >  1:1183711/1‑99 (MQ=255)
                                   gATAAACCTGTGAAATAAATAACTCCGCTTAAAACTGTCCTGGTGAAGACATGTAATTGTGGGA‑TTTTTTTAGCGCGCTGGTTTCCCTTTCAAAcgccgc                                                             >  1:1773971/1‑100 (MQ=255)
                                    aTAAACCTGTGAAATAAATAACTCCGCTTAAAACTGTCCTGGTGAAGACATGTAATTGTGGGA‑TTTTTTTAGCGCGCTGGTTTCCCTTTCAAACGCCGCa                                                            <  1:2409101/100‑1 (MQ=255)
                                       aaCCTGTGAAATAAATAACTCCGCTTAAAACTGTCCTGGTGAAGACATGTAATTGTGGGA‑TTTTTTTAGCGCGCTGGTTTCCCTTTCAAACGCCGCATaa                                                         <  2:1183705/100‑1 (MQ=255)
                                          cTGTGAAATAAATAACTCCGCTTAAAACTGTCCTGGTGAAGACATGTAATTGTGGGA‑TTTTTTTAGCGCGCTGGTTTCCCTTTCAAACGCCGCATAAAAt                                                      >  1:1755081/1‑100 (MQ=255)
                                          cTGTGAAATAAATAACTCCGCTTAAAACTGTCCTGGTGAAGACATGTAATTGTGGGA‑TTTTTTTAGCGCGCTGGTTTCCCTTTCAAACGCCGCATAAAAt                                                      <  1:232913/100‑1 (MQ=255)
                                            gtgAAATAAATAACTCCGCTTAAAACTGTCCTGGTGAAGACATGTAATTGTGGGA‑TTTTTTTAGCGCGCTGGTTTCCCTTTCAAACGCCGCATAAAATTg                                                    <  2:245677/100‑1 (MQ=255)
                                             tgAAATAAATAACTCCGCTTAAAACTGTCCTGGTGAAGACATGTAATTGTGGGA‑TTTTTTTAGCGCGCTGGTTTCCCTTTCAAACGCCGCATAAAATTgc                                                   <  1:2955766/100‑1 (MQ=255)
                                             tgAAATAAATAACTCCGCTTAAAACTGTCCTGGTGAAGACATGTAATTGTGGGA‑TTTTTTTAGCGCGCTGGTTTCCCTTTCAAACGCCGCATAAAATTgc                                                   >  2:300494/1‑100 (MQ=255)
                                              gAAATAAATAACTCCGCTTAAAACTGTCCTGGTGAAGACATGTAATTGTGGGA‑TTTTTTTAGCGCGCTGGTTTCCCTTTCAAACGCCGCATAAAATTgtg                                                  >  2:1068328/1‑98 (MQ=255)
                                              gAAATAAATAACTCCGCTTAAAACTGTCCTGGTGAAGACATGTAATTGTGGGA‑TTTTTTTAGCGCGCTGGTTTCCCTTTCAAACGCCGCATAAAATTgcg                                                  <  1:2199218/100‑1 (MQ=255)
                                              gAAATAAATAACTCCGCTTAAAACTGTCCTGGTGAAGACATGTAATTGTGGGA‑TTTTTTTAGCGCGCTGGTTTCCCTTTCAAACGCCGCATAAAATTgcg                                                  <  1:234603/100‑1 (MQ=255)
                                                aataaataACTCCGCTTAAAACTGTCCTGGTGAAGACATGTAATTGTGGGA‑TTTTTTTAGCGCGCTGGTTTCCCTTTCAAACGCCGCATAAAATTGCGCa                                                <  1:2867274/100‑1 (MQ=255)
                                                 ataaataaCTCCGCTTAAAACTGTCCTGGTGAAGACATGTAATTGTGGGA‑TTTTTTTAGCGCGCTGGTTTCCCTTTCAAACGCCGCATAAAATTGCGCAt                                               >  1:1930253/1‑100 (MQ=255)
                                                  taaataaCTCCGCTTAAAACTGTCCTGGTGAAGACATGTAATTGTGGGA‑TTTTTTTAGCGCGCTGGTTTCCCTTTCAAACGCCGTATAAAATTGCGCAtt                                              >  1:2934319/1‑100 (MQ=255)
                                                   aaataaCTCCGCTTAAAACTGTCCTGGTGAAGACATGTAATTGTGGGA‑TTTTTTTAGCGCGCTGGTTTCCCTTTCAAACGCCGCATAAAATTGCGCAttt                                             >  2:2796569/1‑100 (MQ=255)
                                                    aataaCTCCGCTTAAAACTGTCCTGGTGAAGACATGTAATTGTGGGA‑TTTTTTTAGCGCGCTGGTTTCCCTTTCAAACGCCGCATAAAATTGCGCAtttt                                            <  1:1168071/100‑1 (MQ=255)
                                                    aataaCTCCGCTTAAAACTGTCCTGGTGAAGACATGTAATTGTGGGA‑TTTTTTTAGCGCGCTGGTTTCCCTTTCAAACGCCGCATAAAATTGCGCAtttt                                            >  1:2629057/1‑100 (MQ=255)
                                                        aCTCCGCTTAAAACTGTCCTGGTGAAGACATGTAATTGTGGGA‑TTTTTTTAGCGCGCTGGTTTCCCTTTCAAACGCCGCATAAAATTGCGCATTTTTTTa                                        <  1:2073018/100‑1 (MQ=255)
                                                         cTCCGCTTAAAACTGTCCTGGTGAAGACATGTAATTGTGGGA‑TTTTTTTAGCGCGCTGGTTTCCCTTTCAAACGCCGCATAAAATTGCGCAtttttttn                                        <  2:589516/99‑2 (MQ=255)
                                                         cTCCGCTTAAAACTGTCCTGGTGAAGACATGTAATTGTGGGA‑TTTTTTTAGCGCGCTGGTTTCCCTTTCAAACGCCGCATAAAATTGCGCATTTTTTTAc                                       >  1:20494/1‑100 (MQ=255)
                                                         cTCCGCTTAAAACTGTCCTGGTGAAGACATGTAATTGTGGGA‑TTTTTTTAGCGCGCTGGTTTCCCTTTCAAACGCCGCATAAAATTGCGCATTTTTTTAc                                       <  1:376793/100‑1 (MQ=255)
                                                          tCCGCTTAAAACTGTCCTGGTGAAGACATGTAATTGTGGGATTTTTTTTAGCGCGCTGGTTTCCCTTTCAAACGCCGCATAAAATTGCGCATTTTTTTAc                                       <  1:836116/100‑1 (MQ=255)
                                                          tCCGCTTAAAACTGTCCTGGTGAAGACATGTAATTGTGGGA‑TTTTTTTAGCGCGCTGGTTTCCCTTTCAAACGCCGCATAAAATTGCGCATTTTTTTACg                                      >  2:1697708/1‑100 (MQ=255)
                                                          tCCGCTTAAAACTGTCCTGGTGAAGACATGTAATTGTGGGA‑TTTTTTTAGCGCGCTGGTTTCCCTTTCAAACGCCGCATAAAATTGCGCATTTTTTTACg                                      <  2:1083779/100‑1 (MQ=255)
                                                           ccGCTTAAAACTGTCCTGGTGAAGACATGTAATTGTGGGA‑TTTTTTTAGCGCGCTGGTTTCCCTTTCAAACGCCGCATAAAATTGCGCATTTTTTTACGa                                     >  2:2596679/1‑100 (MQ=255)
                                                             gCTTAAAACTGTCCTGGTGAAGACATGTAATTGTGGGA‑TTTTTTTAGCGCGCTGGTTTCCCTTTCAAACGCCGCATAAAATTGCGCATTTTTTTACGata                                   <  2:766576/100‑1 (MQ=255)
                                                             gCTTAAAACTGTCCTGGTGAAGACATGTAATTGTGGGA‑TTTTTTTAGCGCGCTGGTTTCCCTTTCAAACGCCGCATAAAATTGCGCATTTTTTTACGata                                   <  2:2972949/100‑1 (MQ=255)
                                                                tAAAACTGTCCTGGTGAAGACATGTAATTGTGGGA‑TTTTTTTAGCGCGCTGGTTTCCCTTTCAAACGCCGCATAAAATTGCGCATTTTTTTACGATATAc                                <  2:2180626/100‑1 (MQ=255)
                                                                tAAAACTGTCCTGGTGAAGACATGTAATTGTGGGA‑TTTTTTTAGCGCGCTGGTTTCCCTTTCAAACGCCGCATAAAATTGCGCATTTTTTTACGATATAc                                <  1:628322/100‑1 (MQ=255)
                                                                 aaaaCTGTCCTGGTGAAGACATGTAATTGTGGGA‑TTTTTTTAGCGCGCTGGTTTCCCTTTCAAACGCCGCATAAAATTGCGCATTTTTTTACGATATACt                               <  1:2724490/100‑1 (MQ=255)
                                                                   aaCTGTCCTGGTGAAGACATGTAATTGTGGGA‑TTTTTTTAGCGCGCTGGTTTCCCTTTCAAACGCCGCATAAAATTGCGCATTTTTTTACGATATACTaa                             <  2:709626/100‑1 (MQ=255)
                                                                    aCTGTCCTGGTGAAGACATGTAATTGTGGGATTTTTTTT‑TTGTGCTGGTTTCCCTTTCAAACGCCGCATAAAATTGCGCATTTTTTTACAatatcttgaa                            >  2:1934487/1‑94 (MQ=255)
                                                                       gTCCTGGTGAAGAAATGTAATTGTGGGA‑TTTTTTTAGCGCGCTGGTTTCCCTTTCAAACGCCGCATAAAATTGCGCATTTTTTTACGATATACTAAAAGa                         >  2:1848430/1‑100 (MQ=255)
                                                                        tCCTTGTGAAGACATGTAATTGTGTGA‑TTTTTTTAGCGCGCTGTTTTCCCTTTCAAACGCCGCATAAAATTGCGCATTTTTTTACGATATACTAAAAGat                        <  2:1989126/100‑1 (MQ=255)
                                                                        tCCTGGTGAAGACATGTAATTGTGGGA‑TTTTTTTAGCGCGCTGGTTTCCCTTTCAAACGCCGCATAAAATTGCGCATTTTTTTACGATATACTAAAAGat                        <  1:300496/100‑1 (MQ=255)
                                                                         ccTGGTGAAGACATGTAATTGTGGGA‑TTTTTTTAGCGCGCTGGTTTCCCTTTCAAACGCCGCATAAAATTGCGCATTTTTTTACGATATACTAAAAGata                       <  1:176498/100‑1 (MQ=255)
                                                                          cTGGTGAAGACATGTAATTGTGGGA‑TTTTTTTAGCGCGCTGGTTTCCCTTTCAAACGCCGCATAAAATTGCGCATTTTTTTACGATATACTAAAAGataa                      >  1:1476612/1‑100 (MQ=255)
                                                                          cTGGTGAAGACATGTAATTGTGGGA‑TTTTTTTAGCGCGCTGGTTTCCCATTCAAACGACGCATAAAACTGAGCATTTTTTTACGATataataca                            >  2:2367031/1‑92 (MQ=255)
                                                                            ggTGAAGACATGTAATTGTGGGA‑TTTTTTTAGCGCGCTGGTTTCCCTTTCAAACGCCGCATAAAATTGCGCATTTTTTTACGATATACTAAAAGataata                    >  2:2569448/1‑100 (MQ=255)
                                                                            ggTGAAGACATGTAATTGTGGGA‑TTTTTTTAGCGCGCTGGTTTCCCTTTCAAACGCCGCATAAAATTGCGCATTTTTTTACGATATACTAAAAGataata                    >  1:2984127/1‑100 (MQ=255)
                                                                            ggTGAAGACATGTAATTGTGGGA‑TTTTTTTAGCGCGCTGGTTTCCCTTTCAAACGCCGCATAAAATTGCGCATTTTTTTACGATATACTAAAAGataata                    >  2:1425295/1‑100 (MQ=255)
                                                                             gagAAGACATGTAATTGTGGGA‑TTTTTTTAGCGCGCTGGTTTCCCTTTCAAACGCCGCATAAAATTGCGCATTTTTTTACGATATACTAAAAGataat                     >  1:2014736/3‑98 (MQ=255)
                                                                             gTGAAGACATGTAATTGTTGGA‑TTTTTTTAGCGCGCTGGTTTCCCTTTCAAACGTCGCATAAAATTGCGCATTTTTTTACGATATACTAAAAGATAATAg                   <  2:1440143/100‑1 (MQ=255)
                                                                             gTGAAGACATGTAATTGTGGGA‑TTTTTTTAGCGCGCTGGTTTCCCTTTCAAACGCCGCATAAAATTGCGCATTTTTTTACGATATACTAAAAGATAATAg                   <  1:2087929/100‑1 (MQ=255)
                                                                               gAAGACATGTAATTGTGGGA‑TTTTTTTAGCGCGCTGGTTTCCTTTTCAAACGCCGCATAAAATTGCGCATTTTTTTACGATATACTAAAAGataata                    >  2:302513/1‑97 (MQ=255)
                                                                                  gACATGTAATTGTGGGA‑TTTTTTTAGCGCGCTGGTTTCCCTTTCAAACGCCGCATAAAATTGCGCATTTTTTTACGATATACTAAAAGATAATAGCCTAg              >  2:673067/1‑100 (MQ=255)
                                                                                   aCATGTAATTGTGGGA‑TTTTTTTAGCGCGCTGGTTTCCCTTTCAAACGCCGCATAAAATTGCGCATTTTTTTACGATATACTAAAAGATAATAGCCTAGa             <  2:235759/100‑1 (MQ=255)
                                                                                     aTGTAATTGTGGGA‑TTTTTTTAGCGCGCTGGTTTCCCTTTCAAACGCCGCATAAAATTGCGCATTTTTTTACGATATACTAAAAGATAATAGCCTAGAtc           >  2:2104981/1‑100 (MQ=255)
                                                                                      tGTAATTGTGGGA‑TTTTTTTAGCGCGCTGGTTTCCCTTTCAAACGCCGCATAAAATTGCGCATTTTTTTACGATATACTAAAAGATAATAGCCTAGAtct          >  2:364375/1‑100 (MQ=255)
                                                                                       gTAATTGTGGGA‑TTTTTTTAGCGCGCTGGTTTCCCTTTCAAACGCCGCATAAAATTGCGCATTTTTTTACGATATACTAAAAGATAATAGCCTAGAtctc         >  1:2722136/1‑100 (MQ=255)
                                                                                       gTAATTGTGGGA‑TTTTTTTAGCGCGCTGGTTTCCCTTTCAAACGCCGCATAAAATTGCGCATTTTTTTACGATATACTAAAAGATAATAGCCTAGAtctc         <  2:2984583/100‑1 (MQ=255)
                                                                                       gTAATTGTGGGA‑TTTTTTTAGCGCGCTGGTTTCCCTTTCAAACGCCGCATAAAATTGCGCATTTTTTTACGATATACTAAAAGATAATAGCCTAGAtctc         <  1:663888/100‑1 (MQ=255)
                                                                                        tAATTGTGGGA‑TTTTTTTAGCGCGCTGGTTTCCCTTTCAAACGCCGCATAAAATTGCGCATTTTTTTACGATATACTAAAAGATAATAGCCTAGATctct        <  1:2446960/100‑1 (MQ=255)
                                                                                         aaTTGTGGGA‑TTTTTTTAGCGCGCTGGTTTCCCTTTCAAACGCCGCATAAAATTGCGCATTTTTTTACGATATACTAAAAGATAATAGCCTAGATCTCTa       >  1:1600649/1‑100 (MQ=255)
                                                                                         aaTTGTGGGA‑TTTTTTTAGCGCGCTGGTTTCCCTTTCAAACGCCGCATAAAATTGCGCATTTTTTTACGATATACTAAAAGATAATAGCCTAGATCTCTa       <  1:505403/100‑1 (MQ=255)
                                                                                          aTTGTGGGA‑TTTTTTTAGCGCGCTGGTTTCCCTTTCAAACGCCGCATAAAATTGCGCATTTTTTTACGATATACTAAAAGATAATAGCCTAGATCTCTaa      <  1:2358821/100‑1 (MQ=255)
                                                                                            tgtgGGA‑TTTTTTTAGCGCGCTGGTTTCCCTTTCAAACGCCGCATAAAATTGCGCATTTTTTTACGATATACTAAAAGATAATAGCCTAGATCTCTAAtc    >  2:1196910/1‑100 (MQ=255)
                                                                                              tgGGA‑TTTTTTTAGCGCGCTGGTTTCCCTTTCAAACGCCGCATAAAATTGCGCATTTTTTTACGATATACTAAAAGATAATAGCCTAGATCTCTAAtctc  >  2:33253/1‑100 (MQ=255)
                                                                                                   |                                                                                               
ACATCTTTTTTGTCAATGTATCTAATATTCTTCATGATAAACCTGTGAAATAAATAACTCCGCTTAAAACTGTCCTGGTGAAGACATGTAATTGTGGGATTTTTTTTAGCGCGCTGGTTTCCCTTTCAAACGCCGCATAAAATTGCGCATTTTTTTACGATATACTAAAAGATAATAGCCTAGATCTCTAATCTC  >  NC_000913/3800162‑3800356

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑