Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,800,268 (T)8→7 coding (698/699 nt) waaY ← lipopolysaccharide core biosynthesis protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,800,2610T.98.2% 487.4 / 2.1 108intergenic (‑65/+6)waaZ/waaYlipopolysaccharide KdoIII transferase; lipopolysaccharide core biosynthesis protein/lipopolysaccharide core biosynthesis protein
Reads supporting (aligned to +/- strand):  ref base T (1/1);  new base . (54/52);  total (55/53)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.88e-01

Only 100 of 124 total aligned reads displayed.

ACATCTTTTTTGTCAATGTATCTAATATTCTTCATGATAAACCTGTGAAATAAATAACTCCGCTTAAAACTGTCCTGGTGAAGACATGTAATTGTGGGATTTTTTTTAGCGCGCTGGTTTCCCTTTCAAACGCCGCATAAAATTGCGCATTTTTTTACGATATACTAAAAGATAATAGCCTAGATCTCTAATCTC  >  NC_000913/3800162‑3800356
                                                                                                   |                                                                                               
ncATCTTTTTTGTCAATGTATCTAATATTCTTCATGATAAACCTGTGAAATAAATAACTCCGCTTAAAACTGTCCTGGTGAAGACATGTAATTGTGGGAt                                                                                                 >  1:937218/2‑100 (MQ=255)
aCATCTTTTTTGTCAATGTATCTAATATTCTTCATGATAAACCTGTGAAATAAATAACTCCGCTTAAAACTGTCCTGGTGAAGACATGTAATTGTGGGAt                                                                                                 >  1:2686488/1‑100 (MQ=255)
 cATCTTTTTTGTCAATGTATCTAATATTCTTCATGATAAACCTGTGAAATAAATAACTCCGCTTAAAACTGTCCTGGTGAAGACATGTAATTGTGGGAtt                                                                                                <  2:487197/100‑1 (MQ=255)
 cATCTTTTTTGTCAATGTATCTAATATTCTTCATGATAAACCTGTGAAATAAATAACTCCGCTTAAAACTGTCCTGGTGAAGACATGTAATTGTGGGAtt                                                                                                >  1:1498200/1‑100 (MQ=255)
  aTCTTTTTTGTCAATGTATCTAATATTCTTCATGATAAACCTGTGAAATAAATAACTCCGCTTAAAACTGTCCTGGTGAAGACATGTAATTGTGGGAttt                                                                                               >  1:2448843/1‑100 (MQ=255)
   tCTTTTTTGTCAATGTATCTAATATTCTTCATGATAAACCTGTGAAATAAATAACTCCGCTTAAAACTGTCCTGGTGAAGACATGTAATTGTGGGAtttt                                                                                              >  1:1424176/1‑100 (MQ=255)
      tttttGTCAATGTATCTAATATTCTTCATGATAAACCTGTGAAATAAATAACTCCGCTTAAAACTGTCCTGGTGAAGACATGTAATTGTGGGAttttttt                                                                                           <  1:1353408/100‑1 (MQ=255)
      tttttGTCAATGTATCTAATATTCTTCATGATAAACCTGTGAAATAAATAACTCCGCTTAAAACTGTCCTGGTGAAGACATGTAATTGTGGGAttttttt                                                                                           <  1:1986958/100‑1 (MQ=255)
      tttttGTCAATGTATCTAATATTCTTCATGATAAACCTGTGAAATAAATAACTCCGCTTAAAACTGTCCTGGTGAAGACATGTAATTGTGGGAttttttt                                                                                           >  1:384993/1‑100 (MQ=255)
      tttttGTCAATGTATCTAATATTCTTCATGATAAACCTGTGAAATAAATAACTCCGCTTAAAACTGTCCTGGTGAAGACATGTAATTGTGGGAttttttt                                                                                           >  1:125158/1‑100 (MQ=255)
      tttttGTCAATGTATCTAATATTCTTCATGATAAACCTGTGAAATAAATAACTCCGCTTAAAACTGTCCTGGTGAAGACATGTAATTGTGGGAttttttt                                                                                           <  2:2265777/100‑1 (MQ=255)
      tttttGTCAATGTATCTAATATTCTTCATGATAAACCTGTGAAATAAATAACTCCGCTTAAAACTGTCCTGGTGAAGACATGTAATTGTGGGAttttttt                                                                                           >  2:2446945/1‑100 (MQ=255)
          tGTCAATGTATCTAATATTCTTCATGATAAACCTGTGAAATAAATAACTCCGCTTAAAACTGTCCTGGTGAAGACATGTAATTGTGGGAtttttttagcg                                                                                       <  1:2743134/100‑5 (MQ=255)
            tCAATGTATCTAATATTCTTCATGATAAACCTGTGAAATAAATAACTCCGCTTAAAACTGTCCTGGTGAAGACATGTAATTGTGGGATTTTTTTAgcgcg                                                                                    <  1:602101/100‑1 (MQ=255)
             cAATGTATCTAATATTCTTCATGATAAACCTGTGAAATAAATAACTCCGCTTAAAACTGTCCTGGTGAAGACATGTAATTGTGGGATTTTTTTAgcgcgc                                                                                   >  1:2734072/1‑100 (MQ=255)
              aaTGTATCTAATATTCTTCATGATAAACCTGTGAAATAAATAACTCCGCTTAAAACTGTCCTGGTGAAGACATGTAATTGTGGGATTTTTTTAGCGCGCt                                                                                  <  1:1127154/100‑1 (MQ=255)
              aaTGTATCTAATATTCTTCATGATAAACCTGTGAAATAAATAACTCCGCTTAAAACTGTCCTGGTGAAGACATGTAATTGTGGGATTTTTTTAGCGCGCt                                                                                  >  2:851949/1‑100 (MQ=255)
                  tATCTAATATTCTTCATGATAAACCTGTGAAATAAATAACTCCGCTTAAAACTGTCCTGGTGAAGACATGTAATTGTGGGATTTTTTTAGCGCGCTGGtt                                                                              >  2:113669/1‑100 (MQ=255)
                   aTCTAATATTCTTCATGATAAACCTGTGAAATAAATAACTCCGCTTAAAACTGTCCTGGTGAAGACATGTAATTGTGGGATTTTTTTAGCGCGCTGGttt                                                                             >  1:1946441/1‑100 (MQ=255)
                   aTCTAATATTCTTCATGATAAACCTGTGAAATAAATAACTCCGCTTAAAACTGTCCTGGTGAAGACATGTAATTGTGGGATTTTTTTAGCGCGCTGGttt                                                                             <  1:1147586/100‑1 (MQ=255)
                   aTCTAATATTCTTCATGATAAACCTGTGAAATAAATAACTCCGCTTAAAACTGTCCTGGTGAAGACATGTAATTGTGGGATTTTTTTAGCGCGCTGGttt                                                                             >  1:1131406/1‑100 (MQ=255)
                   aTCTAATATTCTTCATGATAAACCTGTGAAATAAATAACTCCGCTTAAAACTGTCCTGGTGAAGACATGTAATTGTGGGATTTTTTTAGCACGCTGGttt                                                                             <  2:345110/100‑1 (MQ=255)
                    tCTAATATTCTTCATGATAAACCTGTGAAATAAATAACTACGCTTAAAACTGTCCTGGTGAAGACATGTAATTGTGGGATTTTTTTAGCGCGCTGGTTTc                                                                            >  2:2087917/1‑100 (MQ=255)
                     cTAATATTCTTCATGATAAACCTGTGAAATAAATAACTCCGCTTAAAACTGTCCTGGTGAAGACATGTAAATGTGGGATTTTTTTAGCGCGCTGGTTTcc                                                                           >  1:589519/1‑100 (MQ=255)
                     cTAATATTCTTCATGATAAACCTGTGAAATAAATAACTCCGCTGAAAACTGTCCTGGTGAAGACATGTAATTGTGGGATTTTTTTAGCGCGCTGGTTTcc                                                                           <  2:2531006/100‑1 (MQ=255)
                      tAATATTCTTCATGATAAACCTGTGAAATAAATAACTCCGCTTAAAACTGTCCTGGTGAAGACATGTAATTGTGGGATTTTTTTAGCGCGCTGGTTTccc                                                                          >  2:176496/1‑100 (MQ=255)
                      tAATATTCTTCATGATAAACCTGTGAAATAAATAACTCCGCTTAAAACTGTCCTGGTGAAGACATGTAATTGTGGGATTTTTTTAGCGCGCTGGTTTccc                                                                          >  1:2921905/1‑100 (MQ=255)
                       aaTATTCTTCATGATAAACCTGTGAAATAAATAACTCCGCTTAAAACTGTCCTGGTGAAGACATGTAATTGTGGGATTTTTTTAGCGCGCTGGTTTCCCt                                                                         >  2:2336472/1‑100 (MQ=255)
                       aaTATTCTTCATGATAAACCTGTGAAATAAATAACTCCGCTTAAAACTGTCCTGGTGAAGACATGTAATTGTGGGATTTTTTTAGCGCGCTGGTTTCCCt                                                                         <  2:1675848/100‑1 (MQ=255)
                       aaTATTCTTCATGATAAACCTGTGAAATAAATAACTCCGCTTAAAACTGTCCTGGTGAAGACATGTAATTGTGGGATTTTTTTAGCGCGCTGGTTTCCCt                                                                         >  2:1203514/1‑100 (MQ=255)
                       aaTATTCTTCATGATAAACCTGTGAAATAAATAACTCCGCTTAAAACTGTCCTGGTGAAGACATGTAATTGTGGGATTTTTTTAGCGCGCTGGTTTCCCt                                                                         >  2:628319/1‑100 (MQ=255)
                       aaTATTCTTCATGATAAACCTGTGAAATAAATAACTCCGCTTAAAACTGTCCTGGTGAAGACATGTAATTGTGGGATTTTTTTAGCGCGCTGGTTTCCCt                                                                         >  1:337873/1‑100 (MQ=255)
                        atatTCTTCATGATAAACCTGTGAAATAAATAACTCCGCTTAAAACTGTCCTGGTGAAGACATGTAATTGTGGGATTTTTTTAGCGCGCTGGTTTCCCtt                                                                        >  1:565235/1‑100 (MQ=255)
                         tatTCTTCATGATAAACCTGTGAAATAAATAACTCCGCTTAAAACTGTCCTGGTGAAGACATGTAATTGTGGGATTTTTTTAGCGCGCTGGTTTCCCt                                                                         >  1:2882418/1‑98 (MQ=255)
                         tatTCTTCAGGATAAACCTTGGAAATAAAGAACTCCGCTTAAATCTGTCCTGGTGAAGACATGTAATTGTGTGATTTTTTTAGCGCGCTGGTTTCCCttt                                                                       <  2:575630/100‑1 (MQ=255)
                          atTCTTCATGATAAACCTGTGAAATAAATAACTCCGCTTAAAACTGTCCTGGTGAAGACATGTAATTGTGGGATTTTTTTAGCGCGCTGGTTTCCCTTTc                                                                      >  2:334114/1‑100 (MQ=255)
                          atTCTTCATGATAAACCTGTGAAATAAATAACTCCGCTTAAAACTGTCCTGGTGAAGACATGTAATTGTGGGATTTTTTTAGCGCGCTGGTTTCCCTTTc                                                                      <  1:1102137/100‑1 (MQ=255)
                              ttcATGATAAACCTGTGAAATAAATAACTCCGCTTAAAACTGTCCTGGTGAAGACATGTAATTGTGGGATTTTTTTAGCGCGCTGGTTTCCCTTTCAAAc                                                                  <  1:184522/100‑1 (MQ=255)
                                 aTGATAAACCTGTGAAATAAATAACTCCGCTTAAAACTGTCCTGGTGAAGACATGTAATTGTGGGATTTTTTTAGCGCGCTGGTTTCCCTTTCAAAcgcc                                                               <  1:1956447/100‑1 (MQ=255)
                                 aTGATAAACCTGTGAAATAAATAACTCCGCTTAAAACTGTCCTGGTGAAGACATGTAATTGTGGGATTTTTTTAGCGCGCTGGTTTCCCTTTCAAAcgcc                                                               >  1:2972965/1‑100 (MQ=255)
                                 aTGATAAACCTGTGAAATAAATAACTCCGCTTAAAACTGTCCTGGTGAAGACATGTAATTGTGGGATTTTTTTAGCGCGCTGGTTTCCCTTTCAAAcgcc                                                               <  1:1152011/100‑1 (MQ=255)
                                 aTGATAAACCTGTGAAATAAATAACTCCGCTTAAAACTGTCCTGGTGAAGACATGTAATTGTGGGATTGTTTTAGCGCGCTGGTTTCCCTTTCATAcgc                                                                >  1:1183711/1‑99 (MQ=255)
                                   gATAAACCTGTGAAATAAATAACTCCGCTTAAAACTGTCCTGGTGAAGACATGTAATTGTGGGATTTTTTTAGCGCGCTGGTTTCCCTTTCAAAcgccgc                                                             >  1:1773971/1‑100 (MQ=255)
                                    aTAAACCTGTGAAATAAATAACTCCGCTTAAAACTGTCCTGGTGAAGACATGTAATTGTGGGATTTTTTTAGCGCGCTGGTTTCCCTTTCAAACGCCGCa                                                            <  1:2409101/100‑1 (MQ=255)
                                       aaCCTGTGAAATAAATAACTCCGCTTAAAACTGTCCTGGTGAAGACATGTAATTGTGGGATTTTTTTAGCGCGCTGGTTTCCCTTTCAAACGCCGCATaa                                                         <  2:1183705/100‑1 (MQ=255)
                                          cTGTGAAATAAATAACTCCGCTTAAAACTGTCCTGGTGAAGACATGTAATTGTGGGATTTTTTTAGCGCGCTGGTTTCCCTTTCAAACGCCGCATAAAAt                                                      >  1:1755081/1‑100 (MQ=255)
                                          cTGTGAAATAAATAACTCCGCTTAAAACTGTCCTGGTGAAGACATGTAATTGTGGGATTTTTTTAGCGCGCTGGTTTCCCTTTCAAACGCCGCATAAAAt                                                      <  1:232913/100‑1 (MQ=255)
                                            gtgAAATAAATAACTCCGCTTAAAACTGTCCTGGTGAAGACATGTAATTGTGGGATTTTTTTAGCGCGCTGGTTTCCCTTTCAAACGCCGCATAAAATTg                                                    <  2:245677/100‑1 (MQ=255)
                                             tgAAATAAATAACTCCGCTTAAAACTGTCCTGGTGAAGACATGTAATTGTGGGATTTTTTTAGCGCGCTGGTTTCCCTTTCAAACGCCGCATAAAATTgc                                                   <  1:2955766/100‑1 (MQ=255)
                                             tgAAATAAATAACTCCGCTTAAAACTGTCCTGGTGAAGACATGTAATTGTGGGATTTTTTTAGCGCGCTGGTTTCCCTTTCAAACGCCGCATAAAATTgc                                                   >  2:300494/1‑100 (MQ=255)
                                              gAAATAAATAACTCCGCTTAAAACTGTCCTGGTGAAGACATGTAATTGTGGGATTTTTTTAGCGCGCTGGTTTCCCTTTCAAACGCCGCATAAAATTgtg                                                  >  2:1068328/1‑98 (MQ=255)
                                              gAAATAAATAACTCCGCTTAAAACTGTCCTGGTGAAGACATGTAATTGTGGGATTTTTTTAGCGCGCTGGTTTCCCTTTCAAACGCCGCATAAAATTgcg                                                  <  1:2199218/100‑1 (MQ=255)
                                              gAAATAAATAACTCCGCTTAAAACTGTCCTGGTGAAGACATGTAATTGTGGGATTTTTTTAGCGCGCTGGTTTCCCTTTCAAACGCCGCATAAAATTgcg                                                  <  1:234603/100‑1 (MQ=255)
                                                aataaataACTCCGCTTAAAACTGTCCTGGTGAAGACATGTAATTGTGGGATTTTTTTAGCGCGCTGGTTTCCCTTTCAAACGCCGCATAAAATTGCGCa                                                <  1:2867274/100‑1 (MQ=255)
                                                 ataaataaCTCCGCTTAAAACTGTCCTGGTGAAGACATGTAATTGTGGGATTTTTTTAGCGCGCTGGTTTCCCTTTCAAACGCCGCATAAAATTGCGCAt                                               >  1:1930253/1‑100 (MQ=255)
                                                  taaataaCTCCGCTTAAAACTGTCCTGGTGAAGACATGTAATTGTGGGATTTTTTTAGCGCGCTGGTTTCCCTTTCAAACGCCGTATAAAATTGCGCAtt                                              >  1:2934319/1‑100 (MQ=255)
                                                   aaataaCTCCGCTTAAAACTGTCCTGGTGAAGACATGTAATTGTGGGATTTTTTTAGCGCGCTGGTTTCCCTTTCAAACGCCGCATAAAATTGCGCAttt                                             >  2:2796569/1‑100 (MQ=255)
                                                    aataaCTCCGCTTAAAACTGTCCTGGTGAAGACATGTAATTGTGGGATTTTTTTAGCGCGCTGGTTTCCCTTTCAAACGCCGCATAAAATTGCGCAtttt                                            <  1:1168071/100‑1 (MQ=255)
                                                    aataaCTCCGCTTAAAACTGTCCTGGTGAAGACATGTAATTGTGGGATTTTTTTAGCGCGCTGGTTTCCCTTTCAAACGCCGCATAAAATTGCGCAtttt                                            >  1:2629057/1‑100 (MQ=255)
                                                        aCTCCGCTTAAAACTGTCCTGGTGAAGACATGTAATTGTGGGATTTTTTTAGCGCGCTGGTTTCCCTTTCAAACGCCGCATAAAATTGCGCATTTTTTTa                                        <  1:2073018/100‑1 (MQ=255)
                                                         cTCCGCTTAAAACTGTCCTGGTGAAGACATGTAATTGTGGGATTTTTTTAGCGCGCTGGTTTCCCTTTCAAACGCCGCATAAAATTGCGCAtttttttn                                        <  2:589516/99‑2 (MQ=255)
                                                         cTCCGCTTAAAACTGTCCTGGTGAAGACATGTAATTGTGGGATTTTTTTAGCGCGCTGGTTTCCCTTTCAAACGCCGCATAAAATTGCGCATTTTTTTAc                                       >  1:20494/1‑100 (MQ=255)
                                                         cTCCGCTTAAAACTGTCCTGGTGAAGACATGTAATTGTGGGATTTTTTTAGCGCGCTGGTTTCCCTTTCAAACGCCGCATAAAATTGCGCATTTTTTTAc                                       <  1:376793/100‑1 (MQ=255)
                                                          tCCGCTTAAAACTGTCCTGGTGAAGACATGTAATTGTGGGATTTTTTTTAGCGCGCTGGTTTCCCTTTCAAACGCCGCATAAAATTGCGCATTTTTTTAc                                       <  1:836116/100‑1 (MQ=255)
                                                          tCCGCTTAAAACTGTCCTGGTGAAGACATGTAATTGTGGGATTTTTTTAGCGCGCTGGTTTCCCTTTCAAACGCCGCATAAAATTGCGCATTTTTTTACg                                      >  2:1697708/1‑100 (MQ=255)
                                                          tCCGCTTAAAACTGTCCTGGTGAAGACATGTAATTGTGGGATTTTTTTAGCGCGCTGGTTTCCCTTTCAAACGCCGCATAAAATTGCGCATTTTTTTACg                                      <  2:1083779/100‑1 (MQ=255)
                                                           ccGCTTAAAACTGTCCTGGTGAAGACATGTAATTGTGGGATTTTTTTAGCGCGCTGGTTTCCCTTTCAAACGCCGCATAAAATTGCGCATTTTTTTACGa                                     >  2:2596679/1‑100 (MQ=255)
                                                             gCTTAAAACTGTCCTGGTGAAGACATGTAATTGTGGGATTTTTTTAGCGCGCTGGTTTCCCTTTCAAACGCCGCATAAAATTGCGCATTTTTTTACGata                                   <  2:766576/100‑1 (MQ=255)
                                                             gCTTAAAACTGTCCTGGTGAAGACATGTAATTGTGGGATTTTTTTAGCGCGCTGGTTTCCCTTTCAAACGCCGCATAAAATTGCGCATTTTTTTACGata                                   <  2:2972949/100‑1 (MQ=255)
                                                                tAAAACTGTCCTGGTGAAGACATGTAATTGTGGGATTTTTTTAGCGCGCTGGTTTCCCTTTCAAACGCCGCATAAAATTGCGCATTTTTTTACGATATAc                                <  2:2180626/100‑1 (MQ=255)
                                                                tAAAACTGTCCTGGTGAAGACATGTAATTGTGGGATTTTTTTAGCGCGCTGGTTTCCCTTTCAAACGCCGCATAAAATTGCGCATTTTTTTACGATATAc                                <  1:628322/100‑1 (MQ=255)
                                                                 aaaaCTGTCCTGGTGAAGACATGTAATTGTGGGATTTTTTTAGCGCGCTGGTTTCCCTTTCAAACGCCGCATAAAATTGCGCATTTTTTTACGATATACt                               <  1:2724490/100‑1 (MQ=255)
                                                                   aaCTGTCCTGGTGAAGACATGTAATTGTGGGATTTTTTTAGCGCGCTGGTTTCCCTTTCAAACGCCGCATAAAATTGCGCATTTTTTTACGATATACTaa                             <  2:709626/100‑1 (MQ=255)
                                                                    aCTGTCCTGGTGAAGACATGTAATTGTGGGATTTTTTTTTTGTGCTGGTTTCCCTTTCAAACGCCGCATAAAATTGCGCATTTTTTTACAatatcttgaa                            >  2:1934487/1‑94 (MQ=255)
                                                                       gTCCTGGTGAAGAAATGTAATTGTGGGATTTTTTTAGCGCGCTGGTTTCCCTTTCAAACGCCGCATAAAATTGCGCATTTTTTTACGATATACTAAAAGa                         >  2:1848430/1‑100 (MQ=255)
                                                                        tCCTTGTGAAGACATGTAATTGTGTGATTTTTTTAGCGCGCTGTTTTCCCTTTCAAACGCCGCATAAAATTGCGCATTTTTTTACGATATACTAAAAGat                        <  2:1989126/100‑1 (MQ=255)
                                                                        tCCTGGTGAAGACATGTAATTGTGGGATTTTTTTAGCGCGCTGGTTTCCCTTTCAAACGCCGCATAAAATTGCGCATTTTTTTACGATATACTAAAAGat                        <  1:300496/100‑1 (MQ=255)
                                                                         ccTGGTGAAGACATGTAATTGTGGGATTTTTTTAGCGCGCTGGTTTCCCTTTCAAACGCCGCATAAAATTGCGCATTTTTTTACGATATACTAAAAGata                       <  1:176498/100‑1 (MQ=255)
                                                                          cTGGTGAAGACATGTAATTGTGGGATTTTTTTAGCGCGCTGGTTTCCCTTTCAAACGCCGCATAAAATTGCGCATTTTTTTACGATATACTAAAAGataa                      >  1:1476612/1‑100 (MQ=255)
                                                                          cTGGTGAAGACATGTAATTGTGGGATTTTTTTAGCGCGCTGGTTTCCCATTCAAACGACGCATAAAACTGAGCATTTTTTTACGATataataca                            >  2:2367031/1‑92 (MQ=255)
                                                                            ggTGAAGACATGTAATTGTGGGATTTTTTTAGCGCGCTGGTTTCCCTTTCAAACGCCGCATAAAATTGCGCATTTTTTTACGATATACTAAAAGataata                    >  2:2569448/1‑100 (MQ=255)
                                                                            ggTGAAGACATGTAATTGTGGGATTTTTTTAGCGCGCTGGTTTCCCTTTCAAACGCCGCATAAAATTGCGCATTTTTTTACGATATACTAAAAGataata                    >  1:2984127/1‑100 (MQ=255)
                                                                            ggTGAAGACATGTAATTGTGGGATTTTTTTAGCGCGCTGGTTTCCCTTTCAAACGCCGCATAAAATTGCGCATTTTTTTACGATATACTAAAAGataata                    >  2:1425295/1‑100 (MQ=255)
                                                                             gagAAGACATGTAATTGTGGGATTTTTTTAGCGCGCTGGTTTCCCTTTCAAACGCCGCATAAAATTGCGCATTTTTTTACGATATACTAAAAGataat                     >  1:2014736/3‑98 (MQ=255)
                                                                             gTGAAGACATGTAATTGTTGGATTTTTTTAGCGCGCTGGTTTCCCTTTCAAACGTCGCATAAAATTGCGCATTTTTTTACGATATACTAAAAGATAATAg                   <  2:1440143/100‑1 (MQ=255)
                                                                             gTGAAGACATGTAATTGTGGGATTTTTTTAGCGCGCTGGTTTCCCTTTCAAACGCCGCATAAAATTGCGCATTTTTTTACGATATACTAAAAGATAATAg                   <  1:2087929/100‑1 (MQ=255)
                                                                               gAAGACATGTAATTGTGGGATTTTTTTAGCGCGCTGGTTTCCTTTTCAAACGCCGCATAAAATTGCGCATTTTTTTACGATATACTAAAAGataata                    >  2:302513/1‑97 (MQ=255)
                                                                                  gACATGTAATTGTGGGATTTTTTTAGCGCGCTGGTTTCCCTTTCAAACGCCGCATAAAATTGCGCATTTTTTTACGATATACTAAAAGATAATAGCCTAg              >  2:673067/1‑100 (MQ=255)
                                                                                   aCATGTAATTGTGGGATTTTTTTAGCGCGCTGGTTTCCCTTTCAAACGCCGCATAAAATTGCGCATTTTTTTACGATATACTAAAAGATAATAGCCTAGa             <  2:235759/100‑1 (MQ=255)
                                                                                     aTGTAATTGTGGGATTTTTTTAGCGCGCTGGTTTCCCTTTCAAACGCCGCATAAAATTGCGCATTTTTTTACGATATACTAAAAGATAATAGCCTAGAtc           >  2:2104981/1‑100 (MQ=255)
                                                                                      tGTAATTGTGGGATTTTTTTAGCGCGCTGGTTTCCCTTTCAAACGCCGCATAAAATTGCGCATTTTTTTACGATATACTAAAAGATAATAGCCTAGAtct          >  2:364375/1‑100 (MQ=255)
                                                                                       gTAATTGTGGGATTTTTTTAGCGCGCTGGTTTCCCTTTCAAACGCCGCATAAAATTGCGCATTTTTTTACGATATACTAAAAGATAATAGCCTAGAtctc         >  1:2722136/1‑100 (MQ=255)
                                                                                       gTAATTGTGGGATTTTTTTAGCGCGCTGGTTTCCCTTTCAAACGCCGCATAAAATTGCGCATTTTTTTACGATATACTAAAAGATAATAGCCTAGAtctc         <  2:2984583/100‑1 (MQ=255)
                                                                                       gTAATTGTGGGATTTTTTTAGCGCGCTGGTTTCCCTTTCAAACGCCGCATAAAATTGCGCATTTTTTTACGATATACTAAAAGATAATAGCCTAGAtctc         <  1:663888/100‑1 (MQ=255)
                                                                                        tAATTGTGGGATTTTTTTAGCGCGCTGGTTTCCCTTTCAAACGCCGCATAAAATTGCGCATTTTTTTACGATATACTAAAAGATAATAGCCTAGATctct        <  1:2446960/100‑1 (MQ=255)
                                                                                         aaTTGTGGGATTTTTTTAGCGCGCTGGTTTCCCTTTCAAACGCCGCATAAAATTGCGCATTTTTTTACGATATACTAAAAGATAATAGCCTAGATCTCTa       >  1:1600649/1‑100 (MQ=255)
                                                                                         aaTTGTGGGATTTTTTTAGCGCGCTGGTTTCCCTTTCAAACGCCGCATAAAATTGCGCATTTTTTTACGATATACTAAAAGATAATAGCCTAGATCTCTa       <  1:505403/100‑1 (MQ=255)
                                                                                          aTTGTGGGATTTTTTTAGCGCGCTGGTTTCCCTTTCAAACGCCGCATAAAATTGCGCATTTTTTTACGATATACTAAAAGATAATAGCCTAGATCTCTaa      <  1:2358821/100‑1 (MQ=255)
                                                                                            tgtgGGATTTTTTTAGCGCGCTGGTTTCCCTTTCAAACGCCGCATAAAATTGCGCATTTTTTTACGATATACTAAAAGATAATAGCCTAGATCTCTAAtc    >  2:1196910/1‑100 (MQ=255)
                                                                                              tgGGATTTTTTTAGCGCGCTGGTTTCCCTTTCAAACGCCGCATAAAATTGCGCATTTTTTTACGATATACTAAAAGATAATAGCCTAGATCTCTAAtctc  >  2:33253/1‑100 (MQ=255)
                                                                                                   |                                                                                               
ACATCTTTTTTGTCAATGTATCTAATATTCTTCATGATAAACCTGTGAAATAAATAACTCCGCTTAAAACTGTCCTGGTGAAGACATGTAATTGTGGGATTTTTTTTAGCGCGCTGGTTTCCCTTTCAAACGCCGCATAAAATTGCGCATTTTTTTACGATATACTAAAAGATAATAGCCTAGATCTCTAATCTC  >  NC_000913/3800162‑3800356

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: