| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 134766 | 125 (1.030) | 6 (0.060) | 5/176 | 14.4 | 5.3% | intergenic (+16/+22) | yacL/speD | UPF0231 family protein/S‑adenosylmethionine decarboxylase |
| ? | NC_000913 | = 134772 | 104 (0.970) | intergenic (+22/+16) | yacL/speD | UPF0231 family protein/S‑adenosylmethionine decarboxylase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below cutoff threshold. | |||||||||||
AACTACTACGACGAAGAAAGCCTGTCGCTATGCGGCGTTGAGGATTTTCTGCAGGTCGTGGCGGCTTACCGCAATTTCGTGCAGCAGAAGTAAATAAATCTGGCGGAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/134658‑134766‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tctggcggagcTCCCAGGCTCCGCCAGATTTATTTACTTCTGCTGCACGAAATTGCGGTAAGCCGCCACGACCTGCAGAAAATCCTCAACGCCGCATAGCGACAGGCTTT < NC_000913/134772‑134674 AACTACTACGACGAAGAAAGCCTGTCGCTATGCGGCGTTGAGGATTTTCTGCAGGTCGTGGCGGCTTACCGCAATTTCGTGCAGCAGAAGTAAATAAATC < 2:2284809/100‑1AACTACTACGACGAAGAAAGCCTGTCGCTATGCGGCGTTGAGGATTTTCTGCAGGTCGTGGCGGCTTACCGCAATTTCGTGCAGCAGAAGTAAATAAATC < 1:2893859/100‑1AACTACTACGACGAAGAAAGCCTGTCGCTATGCGGCGTTGAGGATTTTCTGCAGGTCGTGGCGGCTTACCGCAATTTCGTGCAGCAGAAGTAAATAAATC > 2:1727407/1‑100 CTACTACGACGAAGAAAGCCTGTCGCTATGCGGCGTTGAGGATTTTCTGCAGGTCGTGGCGGCTTACCGCAATTTCGTGCAGCAGAAGTAAATAAATCTG > 1:2346337/1‑100 ACTACGACGAAGAAAGCCTGTCGCTATGCGGCGTTGAGGATTTTCTGCAGGTCGTGGCGGCTTACCGCAATTTCGTGCAGCAGACGTAAATAAATCTGGC > 1:789278/1‑100 ACTACGACGAAGAAAGCCTGTCGCTATGCGGCGTTGAGGATTTTCTGCAGGTCGTGGCGGCTTACCGCAATTTCGTGCAGCAGAAGTAAATAAATCTGGC > 1:1204866/1‑100 ACTACGACGAAGAAAGCCTGTCGCTATGCGGCGTTGAGGATTTTCTGCAGGTCGTGGCGGCTTACCGCAATTTCGTGCAGCAGAAGTAAATAAATCTGGC > 2:1118155/1‑100 ACTACGACGAAGAAAGCCTGTCGCTATGCGGCGTTGAGGATTTTCTGCAGGTCGTGGCGGCTTACCGCAATTTCGTGCAGCAGAAGTAAATAAATCTGGC < 1:2616728/100‑1 TACGACGAAGAAAGCCTGTCGCTATGCGGCGTTGAGGATTTTCTGCAGGTCGTGGCGGCTTACCGCAATTTCGTGCAGCAGAAGTAAATAAATCTGGCGG < 1:2839918/100‑1 TACGACGAAGAAAGCCTGTCGCTATGCGGCGTTGAGGATTTTCTGCAGGTCGTGGCGGCTTACCGCAATTTCGTGCAGCAGAAGTAAATAAATCTGGCGG < 1:232840/100‑1 ACGACGAAGAAAGCCTGTCGCTATGCGGCGTTGAGGATTTTCTGCAGGTCGTGGCGGCTTACCGCAATTTCGTGCAGCAGAAGTAAATAAATCTGGCGGA > 1:1044665/1‑100 CGACGAAGAAAGCCTGTCGCTATGCGGCGTTGAGGATTTTCTGCAGGTCGTGGCGGCTTACCGCAATTTCGTGCAGCAGAAGTAAATAAATCTGGCGGAG > 1:2227601/1‑100 CGACGAAGAAAGCCTGTCGCTACGCGGCGTTGAGGATTTTCTGCAGGTCGTGGCGGCTTACCGCAATTTCGTGCAGCAGAAGTAAATAAATCTGGCGGAG > 2:1976483/1‑100 AGAAAGCCTGTCGCTATGCGGCGTTGAGGATTTTCTGCAGGTCGTGGCGGCTTACCGCAATTTCGTGCAGCAGAAGTAAATAAATCTGGCGGAGCTCCCA > 2:2050048/1‑100 CTGTCGCTATGCGGCGTTGAGGATTTTCTGCAGGTCGTGGCGGCTTACCGCAATTTCGTGCAGCAGAAGTAAATAAATCTGGCGGAGCTCCCAGGCTCCG < 1:2050060/100‑1 TATGCGGCGTTGAGGATTTTTTGCAGGTCGTGGCGGCTTACCGCAATTTCGTGCAGCAGAAGTAAATAAATCTGGCGGAGCTCCCAGGCTCCGCCAGATT < 1:1613117/100‑1 TATGCGGCGTTGAGGATTTTTTGCAGGTCGTGGCGGCTTACCGCAATTTCGTGCAGCAGAAGTAAATAAATCTGGCGGAGCTCCCAGGCTCCGCCAGATT < 1:650823/100‑1 GGATTTTCTGCAGGTCGTGGCGGCTTACCGCAATTTCGTGCAGCAGAAGTAAATAAATCTGGCGGAGCTCCCAGGCTCCGCCAGATTTATTTACTTCTGC > 2:1479830/1‑100 TTTCTGCAGGTCGTGGCGGCTTACCGCAATTTCGTGCAGCAGAAGTAAATAAATCTGGCGGAGCTCCCAGGCTCCGCCAGATTTATTTACTTCTGCTGCA < 1:1479839/100‑1 TCTGGCGGAGCTCCCAGGCTCCGCCAGATTTATTTTCTTCTGCTGCACGAAATTGCGGTCAGCCGCCACGACCTGCAGAAAATCCTCAACGCCGCATAGC < 1:593000/100‑1 TCTGGCGGAGCTCCCAGGCTCCGCCAGATTTATTTACTTCTGCTGCACGAAATTGCGGTAAGCCGCCACGACCTGCAGAAAATCCTCAACGCCGCATAGC < 1:46931/100‑1 CTGGCGGAGCTCCCAGGCTCCGCCAGATTTATTTACTTCTGCTGCACGAAATTGCGGTAAGCCGCCACGACCTGCAGAAAATCCTCAACGCCGCATAGCG > 1:2414724/1‑100 CTGGCGGAGCTCCCAGGCTCCGCCAGATTTATTTACTTCTGCTGCACGAAATTGCGGTAAGCCGCCACGACCTGCAGAAAATCCTCAACGCCGCATAGCG < 2:1683334/100‑1 TGGCGGAGCTCCCAGGCTCCGCCAGATTTATTTACTTCTGCTGCACGAAATTGCGGTAAGCCGCCACGACCTGCAGAAAATCCTCAACGCCGCATAGCGA > 1:1116550/1‑100 nGCGGAGCTCCCAGGCTCCGCCAGATTTATTTACTTCTGCTGCACGAAATTGCGGTAAGCCGCCACGACCTGCAGAAAATCCTCAACGCCGCATAGCGAC > 1:1904495/2‑100 GGCGGAGCTCCCAGGCTCCGCCAGATTTATTTACTTCTGCTGCACGAAATTGCGGTAAGCCGCCACGACCTGCAGAAAATCCTCAACGCCGCATAGCGAC > 1:596093/1‑100 GGCGGAGCTCCCAGGCTCCGCCAGATTTATTTACTTCTGCTGCACGAAATTGCGGTAAGCCGCCACGACCTGCAGAAAATCCTCAACGCCGCATAGCGAC > 1:527329/1‑100 GGCGGAGCTCCCAGGCTCCGCCAGATTTATTTACTTCTGCTGCACGAAATTGCGGTAAGCCGCCACGACCTGCAGAAAATCCTCAACGCCGCATAGCGAC > 1:2752684/1‑100 GGCGGAGCTCCCAGGCTCCGCCAGATTTATTTACTTCTGCTGCACGAAATTGCGGTAAGCCGCCACGACCTGCAGAAAATCCTCAACGCCGCATAGCGAC < 2:357325/100‑1 CGGAGCTCCCAGGCTCCGCCAGATTTATTTACTTCTGCTGCACGAAATTGCGGTAAGCCGCCACGACCTGCAGAAAATCCTCAACGCCGCATAGCGACAG > 1:2774808/1‑100 CGGAGCTCCCAGGCTCCGCCAGATTTATTTACTTCTGCTGCACGAAATTGCGGTAAGCCGCCACGACCTGCAGAAAATCCTCAACGCCGCATAGCGACAG > 1:2769793/1‑100 CGGAGCTCCCAGGCTCCGCCAGATTTATTTACTTCTGCTGCACGAAATTGCGGTAAGCCGCCACGACCTGCAGAAAATCCTCAACGCCGCATAGCGACAG > 1:1256853/1‑100 GCTCCCAGGCTCCGCCAGATTTATTTACTTCTGCTGCACGAAATTGCGGTAAGCCGCCACGACCTGCAGAAAATCCTCAACGCCGCATAGCGACAGGCTT > 1:403632/1‑100 CTCCCAGGCTCCGCCAGATTTATTTACTTCTGCTGCACGAAATTGCGGTAAGCCGCCACGACCTGCAGAAAATCCTCAACGCCGCATAGCGACAGGCTTT < 1:514960/100‑1 AACTACTACGACGAAGAAAGCCTGTCGCTATGCGGCGTTGAGGATTTTCTGCAGGTCGTGGCGGCTTACCGCAATTTCGTGCAGCAGAAGTAAATAAATCTGGCGGAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/134658‑134766‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tctggcggagcTCCCAGGCTCCGCCAGATTTATTTACTTCTGCTGCACGAAATTGCGGTAAGCCGCCACGACCTGCAGAAAATCCTCAACGCCGCATAGCGACAGGCTTT < NC_000913/134772‑134674 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |