Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 2,470,410 (T)7→6 100% coding (1280/1332 nt) gtrS → serotype‑specific glucosyl transferase, CPS‑53 (KpLE1) prophage

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,470,4040T.91.4% 438.7 / 32.2 116coding (1274/1332 nt)gtrSserotype‑specific glucosyl transferase, CPS‑53 (KpLE1) prophage
Reads supporting (aligned to +/- strand):  ref base T (6/2);  new base . (57/49);  total (63/53)
Fisher's exact test for biased strand distribution p-value = 2.94e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.79e-01

Only 100 of 133 total aligned reads displayed.

AATTTTATGTGTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATA  >  NC_000913/2470305‑2470501
                                                                                                   |                                                                                                 
aaTTTTATGTGTCATTTTTCGGGGAAGGATATATAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGt                                                                                                   <  1:2431705/100‑1 (MQ=255)
 aTTTTATGTGTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGtt                                                                                                  >  1:1636612/1‑100 (MQ=255)
     tATGTGTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGtttttt                                                                                              <  1:2272250/100‑1 (MQ=255)
     tATGTGTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGtttttt                                                                                              >  1:1446650/1‑100 (MQ=255)
      aTGTGTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGtttttta                                                                                             <  2:110167/100‑2 (MQ=255)
        gtgtCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGttttttaat                                                                                           >  2:1518771/1‑97 (MQ=255)
         tgtCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAGCAGTCGttttttaatt                                                                                          >  1:1700612/1‑96 (MQ=255)
         tgtCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGttttttaatt                                                                                          >  2:960840/1‑96 (MQ=255)
         tgtCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGttttttaatt                                                                                          <  2:2520702/100‑5 (MQ=255)
         tgtCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGttttttaatt                                                                                          >  2:1825376/1‑96 (MQ=255)
          gtCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAAGAGTCGTTTTTTAAttt                                                                                        >  1:1440972/1‑100 (MQ=255)
          gtCATTTTTCGAGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGAACTTTGCTTATACATAACAGTCGttttttaatt                                                                                          >  1:2232037/1‑95 (MQ=255)
           tCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTAATTta                                                                                       <  1:2626644/100‑1 (MQ=255)
            naTTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTAATTtat                                                                                      >  1:1422916/2‑100 (MQ=255)
             aTTTTTCGGGGAAGGATATAGAGATTTACGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCCTTGCTTATACATAACAGTCGTTTTTTAATTtat                                                                                      <  1:1750120/99‑1 (MQ=255)
             aTTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTAATTtata                                                                                     <  1:1038993/100‑1 (MQ=255)
             aTTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTAATTtata                                                                                     >  1:1053799/1‑100 (MQ=255)
             aTTTTTCATGGTAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTAATTtata                                                                                     <  1:1578098/100‑1 (MQ=255)
               ttttCGGGGAATGTTATAGAGATTTAAGCAAGTATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTAATTtata                                                                                     <  1:2752533/98‑1 (MQ=255)
               ttttCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTAATTTATaaa                                                                                   <  2:1221664/100‑1 (MQ=255)
               ttttCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTAATTTATaaa                                                                                   <  1:2536401/100‑1 (MQ=255)
               ttttCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTAATTTATaaa                                                                                   >  2:729067/1‑100 (MQ=255)
                tttCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTAATTTATaaaa                                                                                  <  1:418086/100‑1 (MQ=255)
                 ttCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTAATTTATAAaat                                                                                 >  1:2704417/1‑100 (MQ=255)
                   cGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTAATTTATAAaataa                                                                               >  1:1639140/1‑100 (MQ=255)
                   cGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTAATTTATAAaataa                                                                               <  2:1053801/100‑1 (MQ=255)
                    ggggAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTAATTTATAAaataat                                                                              <  1:118645/100‑1 (MQ=255)
                    ggggAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTAATTTATAAaataat                                                                              >  1:280810/1‑100 (MQ=255)
                    ggggAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTAATTTATAAaataat                                                                              >  2:1333268/1‑100 (MQ=255)
                     gggtatgATATAGATAGTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTAATGTATAAAATAAtt                                                                             >  1:427312/7‑100 (MQ=255)
                     gggAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTAATTTATAAAATAAtt                                                                             >  2:1069586/1‑100 (MQ=255)
                     gggAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTAGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTAATTTATATAATAAtt                                                                             >  1:1930068/1‑100 (MQ=255)
                      ggAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTAATTTATAAAATAAtt                                                                             <  1:960838/99‑1 (MQ=255)
                      ggAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTAATTTATAAAATAATTc                                                                            <  1:156368/100‑1 (MQ=255)
                       gAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTAATTTATAAaataat                                                                              <  1:1125205/97‑1 (MQ=255)
                       gAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTAATTTATAAAATAATTc                                                                            <  2:964016/99‑1 (MQ=255)
                       gAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTAATTTATAAAATAATTCa                                                                           >  2:2771932/1‑100 (MQ=255)
                        aaGTATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTAGACCTTTGCTTATACATAACAGTCGTTTTATAAATTaaaaaacgactg                                                                             <  1:1006773/98‑7 (MQ=255)
                          ggATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTAATTTATAAAATAATTCAAAg                                                                        <  2:805942/100‑1 (MQ=255)
                          ggATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTAATTTATAAAATAATTCAAAg                                                                        <  2:2513788/100‑1 (MQ=255)
                           gATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAg                                                                        <  1:158594/100‑1 (MQ=255)
                             tataGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGaa                                                                      >  2:328468/1‑100 (MQ=255)
                             tataGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTAATTTATAAAATAATTCAAAGaaa                                                                     >  1:1073400/1‑100 (MQ=255)
                             tataGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTAATTTATAAAATAATTCAAAGaaa                                                                     <  2:1528699/100‑1 (MQ=255)
                              ataGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTAATTTATAAAATAATTCAAAGAAAt                                                                    >  2:568383/1‑100 (MQ=255)
                               taGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTAATTTATAAAATAATTCAAAGAAATc                                                                   >  2:2856674/1‑100 (MQ=255)
                               taGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTAATTTATAAAATAATTCAAAGAAATc                                                                   >  2:2289010/1‑100 (MQ=255)
                               taGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTAATTTATAAAATAATTCAAAGAAATc                                                                   >  2:2225493/1‑100 (MQ=255)
                                 gagaTTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTAATTTATAAAATAATTCAAAGAAATCaa                                                                 <  1:2849382/100‑1 (MQ=255)
                                 gagaTTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTAATTTATAAAATAATTCAAAGAAATCaa                                                                 >  2:933115/1‑100 (MQ=255)
                                 gagaTTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTAATTTATAAAATAATTCAAAGAAATCaa                                                                 >  2:494450/1‑100 (MQ=255)
                                    aTTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTATTTATTAAATAATTCAAAGAAATCAAGAc                                                              >  1:241818/1‑100 (MQ=255)
                                    aTTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGAc                                                              >  1:1738950/1‑100 (MQ=255)
                                     tttAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACa                                                             <  2:1422707/100‑1 (MQ=255)
                                         agcaagcaTTTATTTGGAATGTATTTTTTGTTCGATTTTTGCTTATACATAACAGTCGTTTTTTTATTTATAAAATAATTCAAAGAAATCAAGACAATAg                                                         >  1:484730/1‑100 (MQ=255)
                                          gcaagcaTTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAg                                                         <  1:2536563/99‑1 (MQ=255)
                                          gcaagcaTTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGc                                                        <  1:862714/100‑1 (MQ=255)
                                          gcaagcaTTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGc                                                        <  2:2152140/100‑1 (MQ=255)
                                           caagcaTTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCg                                                       <  1:2856664/100‑1 (MQ=255)
                                           caagcaTTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCg                                                       <  2:483628/100‑1 (MQ=255)
                                             agcaTTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGAt                                                     <  2:1653819/100‑1 (MQ=255)
                                              gtatttatttCGAATGTATTTTTCATTAGACCTTTACTTATACATAACAGTCGTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGa                                                      <  1:325928/96‑1 (MQ=255)
                                              gcaTTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATg                                                    >  2:739502/1‑100 (MQ=255)
                                                atttatttGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTa                                                  <  1:1769131/100‑1 (MQ=255)
                                                atttatttGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTa                                                  >  2:801972/1‑100 (MQ=255)
                                                    atttGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGc                                              <  2:1619689/100‑1 (MQ=255)
                                                     tttGGAATGTATTTTTCGTTCGACTTTTGCTTATACATAACAGTCGTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCa                                             <  1:1282635/100‑1 (MQ=255)
                                                     tttCGAATGTATTTTTCGTTCGAACTAGGCATATACATAACAGTGATTTTTTAATTTATAAAATAATTCAAAGAAATCAAGTCAATAGCGATGTAAAGc                                              <  1:1159559/99‑1 (MQ=255)
                                                      ttGGAATGTATTTTTTTTTTTACCTTTGCGTATACATAACCGTCGTTTTTTTATTTTTAAATTAATTTAAAAAAAGCAATACAATAGCAATGTaaa                                                >  1:838011/1‑96 (MQ=255)
                                                      ttGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGc                                              <  2:1932661/98‑1 (MQ=255)
                                                      ttGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCAc                                            <  1:494449/100‑1 (MQ=255)
                                                      ttGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCAc                                            <  2:2694459/100‑1 (MQ=255)
                                                      ttGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCAc                                            <  2:2753911/100‑1 (MQ=255)
                                                       tGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACt                                           >  2:2006282/1‑100 (MQ=255)
                                                       tGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACt                                           >  2:715819/1‑100 (MQ=255)
                                                             gTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGttt                                     <  2:2621073/100‑1 (MQ=255)
                                                              tATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTa                                    <  1:2084950/100‑1 (MQ=255)
                                                              tATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTAATTTATAAAATAATTCAAAGAAATCAACACAATAGCGATGTAAAGCACTAAGt                                       >  1:564216/1‑97 (MQ=255)
                                                               aTTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTaaa                                   >  2:2640782/1‑100 (MQ=255)
                                                                 ttttCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAAt                                 <  2:1210221/100‑1 (MQ=255)
                                                                     cgttcgACCTTTGCTTATACATAACAGTCGTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTgcg                             >  2:2777097/1‑100 (MQ=255)
                                                                      gttcgACCTTTGCTTATACATAACAGTCGTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTgcgc                            >  2:293134/1‑100 (MQ=255)
                                                                       ttcgACCTTTGCTTATACATAACAGTCGTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTgc                              >  1:699681/1‑97 (MQ=255)
                                                                          gACCTTTGCTTATACATAACAGTCGTTTTTTAATGTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGcc                         <  1:68363/99‑1 (MQ=255)
                                                                           aCCTTTGCTTATACATAACAGTCGTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCaa                       >  1:613500/1‑100 (MQ=255)
                                                                            ccTTTGCTTATACATAACAGTCGTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCACGCCAAt                      >  1:515105/1‑100 (MQ=255)
                                                                              tttGCTTATACATAACAGTCGTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCa                    <  1:1333266/100‑1 (MQ=255)
                                                                                  cTTATACATAACAGTCGTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGgc                <  1:1461455/100‑1 (MQ=255)
                                                                                   ttATACATAACAGTCGTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGgcg               <  1:395555/100‑1 (MQ=255)
                                                                                      taCATAACAGTCGTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGgcgcgc            >  1:2498572/1‑100 (MQ=255)
                                                                                      taCATAACAGTCGTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGgcgcgc            >  1:2264419/1‑100 (MQ=255)
                                                                                        cATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGca           >  2:477984/1‑100 (MQ=255)
                                                                                        cATAACAGTCGTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGcac          >  1:552316/1‑100 (MQ=255)
                                                                                         aTAACAGTCGTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCATGATTGGCGCGcaat         <  2:1728991/100‑3 (MQ=255)
                                                                                         aTAACAGTCGTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGcaca         <  1:927043/100‑1 (MQ=255)
                                                                                         aTAACAGTCGTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGCAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGcaca         >  1:2036183/1‑100 (MQ=255)
                                                                                            aCAGTCGTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGc      <  2:529355/100‑1 (MQ=255)
                                                                                             cAGTCGTTTTTTAATTTATAAAATAATTCAAAGAAATCACGACAATAGCGCTGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGc      >  2:2476476/1‑99 (MQ=255)
                                                                                             cAGTCGTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGc      <  2:880037/99‑1 (MQ=255)
                                                                                                 cGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCtata  >  2:434387/1‑100 (MQ=255)
                                                                                                   |                                                                                                 
AATTTTATGTGTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATA  >  NC_000913/2470305‑2470501

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: