| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2288864 = | 68 (0.660) | 13 (0.140) | 7/158 | NT | 17.7% | pseudogene (51/2525 nt) | yejO | pseudogene, autotransporter outer membrane homology;putative transport; Not classified; putative ATP‑binding component of a transport system |
| ? | NC_000913 | 2288897 = | NA (NA) | pseudogene (18/2525 nt) | yejO | pseudogene, autotransporter outer membrane homology;putative transport; Not classified; putative ATP‑binding component of a transport system | |||||
AATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTATATTCACCCATAGCATTGGCATCAACTGTTGAGTATGGTGAGACAGTTGATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/2288971‑2288864‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acagttgatgCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTT > NC_000913/2288897‑2288995 AATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTATATTCACCCATAGCATTGGCATCAACTGTTGAGTATGGTGAGAg > 2:1285865/1‑99AATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTATATTCACCCATAGCATTGGCATCAACTGTTGAGTATGGTGAGAC > 1:1389146/1‑100 ATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTAGCACCTTCCTTATATTCACACATAGCATTGGCATCAACTGTTGCGTATGGTGAGAC > 2:2169137/1‑99 nGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTATATTCACCCATAGCATTGGCATCAACTGTTGAGTATGGTGAGACAG > 2:1275816/2‑100 AAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTATATTCACCCATAGCATTGGCATCAACTGTTGAGTATGGTGAGACAGTT < 1:2245561/100‑1 AATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTATATTCACCCATAGCATTGGCATCAACTGTTGAGTATGGTGAGACAGTTG > 1:788741/1‑100 AATGACTGAGTCAACCGAGAAGAATTTCCCCGCTTATTGGCACCTTCCTTATATTCACCCATAGCATTGGCATCAACTGTTGAGTATGGTGAGACAGTT > 1:1792928/1‑99 GACTGAGTCAGCCGAGAAGACTTTCCCCGCTTATTCGCACCTTCCTTATATTCACCCATAGCATTGGCAACAACTGCTGAGTATGGTGAGACAGTTGATG > 1:666093/1‑100 GACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTATATTCACCCATAGCATTGGCATCAACTGTTGAGTATGGTGAGACAGTTGATG > 2:461774/1‑100 GACCGAGTCAGCCGAGAAGAATTTCACCGCTTAGTCGCACCGTCCTTATATTCACCCATGGCATTGGCATCAACTGTTGAGTATGGTGAGACAGTTGATG < 1:2349468/100‑1 GCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTATATTCACCCATAGCATTGGCATCAACTGCTGAGCATGGTGAGACAGTTGATGCCCATGCTA > 1:2657972/1‑99 CATTGGCATCAACTGTTGAGTATGGTGAGACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGAC > 1:158744/1‑100 TTGGCATCAACTGTTGAGTATGGTGAGACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTC > 2:432018/1‑100 TGGCATCAACTGTTGAGTATGGTGAGACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCA > 1:1326550/1‑100 GGCATCAACTGTTGAGTATGGTGAGACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAG > 1:1951381/1‑100 GCATCAACTGTTGAGTATGGTGAGACAGTTGATGCCAATGCTATGGGTGAATATAAGGCAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCA > 1:587030/1‑98 GCATCAACTGTTGAGTATGGTGAGACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGT > 2:429213/1‑100 GCATCAACTGTTGAGTATGGTGAGACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGT > 2:1802934/1‑100 GCATCAACTGTTGAGTATGGTGAGACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGT > 2:181402/1‑100 GCATCAACTGTTGAGTATGGTGAGACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGT > 2:269309/1‑100 CATCAACTGTTGAGTATGGTGAGACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTC > 1:629653/1‑100 CATCAACTGTTGAGTATGGTGAGACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTC > 2:287893/1‑100 CATCAACAGATGAGTAT‑GTGAGACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCA > 1:469934/1‑100 ACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGC < 1:1976015/100‑1 ACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGC < 2:566321/100‑1 CAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCC > 2:2636578/1‑100 CAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCC < 2:2438632/100‑1 AGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCG > 1:2519392/1‑100 GTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCG > 1:2622283/1‑99 TGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATT > 2:2642211/1‑100 GATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTT > 2:1759029/1‑100 TGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTT > 1:2534308/1‑100 GCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTT < 2:2110862/100‑1 AATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTATATTCACCCATAGCATTGGCATCAACTGTTGAGTATGGTGAGACAGTTGATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/2288971‑2288864‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acagttgatgCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTT > NC_000913/2288897‑2288995 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |