| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2837465 = | NA (NA) | 13 (0.140) | 7/162 | NT | NA | noncoding (1/27 nt) | REP196 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP196 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | 2837492 = | NA (NA) | intergenic (‑67/+86) | hypF/hydN | carbamoyl phosphate phosphatase and [NiFe] hydrogenase maturation protein/formate dehydrogenase‑H, [4Fe‑4S] ferredoxin subunit | |||||
CAGAACTGTTCTGGCATCAAAGGAATTCCCGGAAATATTCGTAGAATACGGAGCGGGCGGTATCGCCGACCTGTGACTGCCGGATGCGACGCTGTCGTGTCCGGCag‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/2837569‑2837465‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tccggcAGTCACAGGTCGGCGATACCGCCCGCTCCGTATTCTACGAATATTT‑CCGGGAATTCCTTTGATGCCAGAACAGTTCTGTAAGATTTTTAGAACATCAGCGC > NC_000913/2837492‑2837592 CAGAACTGTTCTGGCATCAAAGGAATTCCCGGAAATATTCGTAGAATACGGAGCGGGCGGTATCGCCGACCTGTGACTGCCGGATGCGACGCTGTCGTGT > 2:2892567/1‑100 AGAACTGTTCTGGCATCAAAGGAATTCCCGGAAATATTCGTAGAATACGGAGCGGGCGGTATCGCCGACCTGTGACTGCCGGATGCGACGCTGTCGTGT > 2:2897465/1‑99 GAACTGTTCTGGCATCAAAGGAATTCCCGGAAATATTCGTAGAATACGGAGCGGGCGGTATCGCCGACCTGTGACTGCCGGATGCGACGCTGTCGTGTCC > 2:1315560/1‑100 GAACTGTTCTGGCATCAAAGGAATTCCCGGAAATATTCGTAGAATACGGAGCGGGCGGTATCGCCGACCTGTGACTGCCGGATGCGACGCTGTCGTGTCC < 2:399892/100‑1 GAACTGTTCTGGCATCAAAGGAATTCCCGGAAATATTCGTAGAATACGGAGCGGGCGGTATCGCCGACCTGTGACTGCCGGATGCGACGCTGTCGTGTCC < 2:2536111/100‑1 GAACTGTTCTGGCATCAAAGGAATTCCCGGAAATATTCGTAGAATACGGAGCGGGCGGTATCGCCGACCTGTGACTGCCGGATGCGACGCTGTCGTGTCC < 1:2469258/100‑1 ACTGTTCTGGCATCAAAGGAATTCCCGGAAATATTCGTAGAATACGGAGCGGGCGGTATCGCCGACCTGTGACTGCCGGATGCGACGCTGTCGTGTCCGG < 1:2207820/100‑1 TGTTCTGGCATCAAAGGAATTCCCGGAAATATTCGTAGAATACGGAGCGGGCGGTATCGCCGACCTGTGACTGCCGGATGCGACGCTGTCGTGTCCGGCA < 1:2825196/100‑1 TGTTCTGGCATCAAAGGAATTCCCGGAAATATTCGTAGAATACGGAGCGGGCGGTATCGCCGACCTGTGACTGCCGGATGCGACGCTGTCGTGTCCGGCA > 2:1671994/1‑100 CGGAAATATTCGTAGAATACGGAGCGGGCGGTATCGCCGACCTGTGACTGCCGGATGCGACGCTGTCGTGTCCGGCAGTCACAGGTCGGCGATACCGCCC > 1:204464/1‑100 GTAGAATACGGAGCGGGCGGTATCGCCGACCTGTGACTGCCGGACACGACAGCGTCGCATCCGGCAGTCACAGGTCGGCGATACCGCCCGCTCCGTATTC > 2:204466/1‑100 TGTGACTGCCGGATGCGACGCTGTCGTGTCCGGCAGTCACAGGTCGGCGATACCGCCCGCTCCGTATTCTACGAATATTT‑CCGGGAATTCCTTTGATGCC > 2:2815427/1‑100 ACTGCCGGATGCGACGCTGTCGTGTCCGGCAGTCACAGGTCGGCGATACCGCCCGCTCCGTATTCTACGAATATTT‑CCGGGAATTCCTTTGATGCCAGAA > 2:1023750/1‑100 CTGCCGGATGCGACGCTGTCGTGTCCGGCAGTCACAGGTCGGCGATACCGCCCGCTCCGTATTCTACGAATATTT‑CCGGGGATTCCTTTGATGCCAGAAC > 2:2365312/1‑100 CTGCCGGATGCGACGCTGTCGTGTCCGGCAGTCACAGGTCGGCGATACCGCCCGCTCCGTATTCTACGAATATTT‑CCGGGAATTCCTTTGATGCCAGAAC > 2:1787496/1‑100 CTGCCGGATGCGACGCTGTCGTGTCCGGCAGTCACAGGTCGGCGATACCGCCCGCTCCGTATTCTACGAATATTT‑CCGGGAATTCCTTTGATGCCAGAAC > 2:1787520/1‑100 CTGCCGGATGCGACGCTGTCGTGTCCGGCAGTCACAGGTCGGCGATACCGCCCGCTCCGTATTCTAAGCATATTT‑CCGGGAATCCCTTTGATGCCCGAA > 2:2630233/1‑99 TGCCGGATGCGACGCTGTCGTGTCCGGTAGTCACAGGTCGGCGATACCGCCCGCTCCGTATTCTACGAATATTT‑CCGGGAATTCCTTTGATGCCAGAAC > 1:679826/1‑99 TGCCGGATGCGACGCTGTCGTGTCCGGCAGTCACAGGTCGGCGATACCGCCCGCTCCGTATTCTACGAATATTT‑CCGGGAATTCCTTTGATGCCAGAACA > 2:324759/1‑100 GCCGGATGCGACGCTGTCGTGTCCGGCAGTCACAGGTCGGCGATACCGCCCGCTCCGTATTCTACGAATATTTCCCGGGAATTCCTTTGATGCCAGAACA > 1:2264580/1‑100 GCCGGATGCGACGCTGTCGTGTCCGGCAGTCACAGGTCGGCGATACCGCCCGCTCCGTATTCTACGAATATTT‑CCGGGAATTCCTTTGATGCCAGAACAG > 2:2551587/1‑100 GCCGGATGCGACGCTGTCGTGTCCGGCAGTCACAGGTCGGCGATACCGCCCGCTCCGTATTCTACGAATATTT‑CCGGGAATTCCTTTGATGCCAGAACAG > 1:2125664/1‑100 TCCGGCAGTCACAGGTCGGCGATACCGCCCGCTCCGTATTCTACGAATATTT‑CCGGGAATTCCTTTGATGCCAGAACAGTTCTGTAAGATTTTTAGAACA > 2:1453321/1‑100 CCGGCAGTCACAGGTCGGCGATACCGCCCGCTCCGTATTCTACGAATATTT‑CCGGGAATTCCTTTGATGCCAGAACAGTTCTGTAAGATTTTTAGAACAT < 2:1128121/100‑1 GGCAGTCACAGGTCGGCGATACCGCCCGCTCCGTATTCTACGAATATTT‑CCGGGAATTCCTTTGATGCCAGAACAGTTCTGTAAGATTTTTAGAACATCA > 1:810750/1‑100 GCAGTCACAGGTCGGCGATACCGCCCGCTCCGTATTCTACGAATATTT‑CCGGGAATTCCTTTGATGCCAGAACAGTTCTGTAAGATTTTTAGAACATCAG < 2:1232341/100‑1 CAGTCACAGGTCGGCGATACCGCCCGCTCCGTATTCTACGAATATTT‑CCGGGAATTCCTTTGATGCCAGAACAGTTCTGTAAGATTTTTAGAACATCAGC < 1:899824/100‑1 AGTCACAGGTCGGCGATACCGCCCGCTCCGTATTCTACGAATATTT‑CCGGGAATTCCTTTGCTGCGAGAACAGTACTGTAAGATTTTTAGAACATCA > 1:539686/1‑97 GTCACAGGTCGGCGATACCGCCCGCTCCGTATTCTACGAATATTT‑CCGGGAATTCCTTTGATGCCAGAACAGTTCTGTAAGATTTTTAGAACATCAGCGC < 2:272078/100‑1 GTCACAGGTCGGCGATACCGCCCGCTCCGTATTCTACGAATATTT‑CCGGGAATTCCTTTGATGCCAGAACAGTTCTGTAAGATTTTTAGAACATCAGCGC < 1:1262321/100‑1 GTCACAGGTCGGCGATACCGCCCGCTCCGTATTCTACGAATATTT‑CCGGGAATTCCTTTGATGCCAGAACAGTTCTGTAAGATTTTTAGAACATCAGCGC > 1:2851053/1‑100 CAGAACTGTTCTGGCATCAAAGGAATTCCCGGAAATATTCGTAGAATACGGAGCGGGCGGTATCGCCGACCTGTGACTGCCGGATGCGACGCTGTCGTGTCCGGCag‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/2837569‑2837465‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tccggcAGTCACAGGTCGGCGATACCGCCCGCTCCGTATTCTACGAATATTT‑CCGGGAATTCCTTTGATGCCAGAACAGTTCTGTAAGATTTTTAGAACATCAGCGC > NC_000913/2837492‑2837592 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |