| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3087911 | NA (NA) | 9 (0.090) | 4/170 | NT | NA | intergenic (+51/‑373) | metK/galP | S‑adenosylmethionine synthetase/D‑galactose transporter |
| ? | NC_000913 | = 3087934 | NA (NA) | noncoding (23/26 nt) | REP215 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP215 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
AAAACCGACAAAGCGCAGCTGCTGCGCGATGCTGCCGGTCTGAAGTAATCTTTCTTCACCTGCGTTCAAAGGCCAGCCTCGCGCTGGCCTTTTTCTTTTggat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3087813‑3087911‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGATGCGGCGTGAACGCCTATCCAAAAGAAAAAGGCCAGCGCGAGGCTGGCCTTTGAACGCAGGTGAAGAAAGATTACTTCAGACCGGCAGCATCGCGCAGCA < NC_000913/3087934‑3087832 AAAACCGACAAAGCGCAGCTGCTGCGCGATGCTGCCGGTCTGAAGTAATCTTTCTTCACCTGCGTTCAAAGGCCAGCCTCGCGCTGGCCTTTTTCTTTTG < 2:213350/100‑1AAAACCGACAAAGCGCAGCTGCTGCGCGATGCTGCCGGTCTGAAGTAATCTTTCTTCACCTGCGTTCAAAGGCCAGCCTCGCGCTGGCCTTTTTCTTTTG < 1:2418094/100‑1AAAACCGACAAAGCGCAGCTGCTGCGCGATGCTGCCGGTCTGAAGTAATCTTTCTTCACCTGCGTTCAAAGGCCAGCCTCGCGCTGGCCTTTTTCTTTTG < 2:1072005/100‑1 AAACCGACAAAGCGCAGCTGCTGCGCGATGCTGCCGGTCTGAAGTAATCTTTCTTCACCTGCGTTCAAAGGCCAGCCTCGCGCTGGCCTTTTTCTTTTGG > 2:2640614/1‑100 AAACCGACAAAGCGCAGCTGCTGCGCGATGCTGCCGGTCTGAAGTAATCTTTCTTCACCTGCGTTCAAAGGCCAGCCTCGCGCTGGCCTTTTTCTTTTGG < 1:2908906/100‑1 ACCGACAAAGCGCAGCTGCTGCGCGATGCTGCCGGTCTGAAGTAATCTTTCTTCACCTGCGTTCAAAGGCCAGCCTCGCGCTGGCCTTTTTCTTTTGGAT < 2:1082678/100‑1 GCGATGCTGCCGGTCTGAAGTAATCTTTCTTCACCTGCGTTCAAAGGCCAGCCTCGCGCTGGCCTTTTTCTTTTGGATGCGGCGTGAACGCCTATCCAAA < 1:1858022/100‑1 CGATGCTGCCGGTCTGAAGTAATCTTTCTTCACCTGCGTTCAAAGGCCAGCCTCGCGCTGGCCTTTTTCTTTTGGATGCGGCGTGAACGCCTATCCAAAA < 1:123069/100‑1 CGATGCTGCCGGTCTGAAGTAATCTTTCTTCACCTGCGTTCAAAGGCCAGCCTCGCGCTGGCCTTTTTCTTTTGGATGCGGCGTGAACGCCTATCCAAAA < 2:2398714/100‑1 CGATGCTGCCGGTCTGAAGTAATCTTTCTTCACCTGCGTTCAAAGGCCAGCCTCGCGCTGGCCTTTTTCTTTTGGATGCGGCGTGAACGCCTATCCAAAA < 2:1391790/100‑1 GATGCTGCCGGTCTGAAGTAATCTTTCTTCACCTGCGTTCAGAGGCCAGCCTCGCGCTGGCCTTTTTCTTTTGGATGCGGCGTGAACGCCTATCCAAAAG < 1:1848514/100‑1 GATGCTGCCGGTCTGAAGTAATCTTTCTTCACCTGCGTTCAAAGGCCAGCCTCGCGCTGGCCTTTTTCTTTTGGATGCGGCGTGAACGCCTATCCAAAAG < 2:1489808/100‑1 ATGCTGCCGGTCTGAAGTAATCTTTCTTCACCTGCGTTCAAAGGCCAGCCTCGCGCTGGCCTTTTTCTTTTGGATGCGGCGTGAACGCCTATCCAAAAG < 2:713324/99‑1 TGCTGCTGGTCTGAAGTAATCTTTCTTCACCTGCGTTCAAAGGCCAGCCTCGCGCTGGCCTTTTTCTTTTGGATGCGGCGTGAACGCCTATCCAAAAGAA < 2:2256069/100‑1 TGCTGCCGGTCTGAAGTAATCTTTCTTCACCTGCGTTCAAAGGCCAGCCTCGCGCTGGCCTTTTTCTTTTGGATGCGGCGTGAACGCCTATCCAAAAGAA < 2:1951045/100‑1 GATGCGGCGTGAACGCCTATCCAAAAGAAAAAGGCCAGCGCGAGGCTGGCCTTTGAACGCAGGTGAAGAAAGATTACTTCAGACCGGCAGCATCG < 1:178659/95‑1 TGCGGCGTGAACGCCTATCCAAAAGAAAAAGGCCAGCGCGAGGCTGGCCTTTGAACGCAGGTGAAGAAAGATTACTTCAGACCGGCAGCATCGCGCAGCA < 1:1221133/100‑1 TGCGGCGTGAACGCCTATCCAAAAGAAAAAGGCCAGCGCGAGGCTGGCCTTTGAACGCAGGTGAAGAAAGATTACTTCAGACCGGCAGCATCGCGCAGCA < 2:2762892/100‑1 AAAACCGACAAAGCGCAGCTGCTGCGCGATGCTGCCGGTCTGAAGTAATCTTTCTTCACCTGCGTTCAAAGGCCAGCCTCGCGCTGGCCTTTTTCTTTTggat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3087813‑3087911‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGATGCGGCGTGAACGCCTATCCAAAAGAAAAAGGCCAGCGCGAGGCTGGCCTTTGAACGCAGGTGAAGAAAGATTACTTCAGACCGGCAGCATCGCGCAGCA < NC_000913/3087934‑3087832 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |