| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 265567 = | 106 (1.020) | 17 (0.180) | 11/166 | NT | 15.3% | intergenic (‑24/+53) | ykfF/ykfB | CP4‑6 prophage; uncharacterized protein/CP4‑6 prophage; uncharacterized protein |
| ? | NC_000913 | 265595 = | 90 (0.930) | intergenic (‑52/+25) | ykfF/ykfB | CP4‑6 prophage; uncharacterized protein/CP4‑6 prophage; uncharacterized protein | |||||
GAAGAACGCTGAGAAAGTTCTGTCCACTCTCGGAGACTGCAGCAACGACTGATAGTAGTATCTTCCCCAGCAAATTCACCCCGACAGCTAGCAGGCTGCCGGGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/265671‑265567‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggggtGAATTTGCTGGGGAAGATACTACTATCAGTCGTTGCTGCAGTCTCCGAGAGTGGACAGAACTTTCTCAGCGTTCTTCCGGTCCGCAGTGAAGGTCCCTG > NC_000913/265595‑265693 GAAGAACGCTGAGAAAGTTCTGTCCACTCTCGGAGACTGCAGCAACGACTGATAGTAGTATCTTCCCCAGCAAATTCACCCCGACAGCTAGCAGGCTGCC > 1:1580155/1‑100 AGAACGCTGAGAAAGTTCTGTCCACTCTCGGAGACTGCAGCAACGACTGATAGTAGTATCTTCCCCAGCAAATTCACCCCGACAGCTAGCAGGCTGCCGG > 2:2611900/1‑100 GAACGCTGAGAAAGTTCTGTCCACTCTCGGAGACTGCAGCAACGACTGATAGTAGTATCTTCCCCAGCAAATTCACCCCGACAGCTAGCAGGCTGCCGGG > 2:137129/1‑100 AACGCTGAGAAAGTTCTGTCCACTCTCGGAGACTGCAGCAACGACTGATAGTAGTATCTTCCCCAGCAAATTCACCCCGACAGCTAGCAGGCTGCCGGGG < 1:453302/100‑1 ACGCTGAGAAAGTTCTGTCCACTCTCGGAGACTGCAGCAACGACTGATAGTAGTATCTTCCCCAGCAAATTCACCCCGACAGCTAGCAGGCTGCCGGGGT > 1:1184929/1‑100 ACGCTGAGAAAGTTCTGTCCACTCTCGGAGACTGCAGCAACGACTGATAGTAGTATCTTCCCCAGCAAATTCACCCCGACAGCTAGCAGGCTGCCGGGGT < 1:2499501/100‑1 GTTCTGTCCACTCTCGGAGACTGCAGCAACGACTGATAGTAGTATCTTCCCCAGCAAATTCACCCCGGCAGCCTGCTAGCTGTCGGGGTGAATTTGCTGG < 1:388594/100‑1 CAGCAAATTCACCCCGACAGCTAGCAGGCTGCCGGGGTGAATTTGCTGGGGAAGATACTACTATCAGTCGTTGCTGCAGTCTCCGAGAGTGGACAGAACT > 1:344094/1‑100 AGCAAATTCACCCCGACAGCTAGCAGGCTGCCGGGGTGAATTTGCTGGGGAAGATACTACTATCAGTCGTTGCTGCAGTCTCCGAGAGTGGACAGAACTT > 2:438268/1‑100 AGCAAATTCACCCCGACAGCTAGCAGGCTGCCGGGGTGAATTTGCTGGGGAAGATACTACTATCAGTCGTTGCTGCAGTCTCCGAGAGTGGACAGAACTT > 2:2373929/1‑100 TTCACCCCGACAGCTAGCAGGCTGCCGGGGTGAATTTGCTGGGGAAGATACTACTATCAGTCGTTGCTGCAGTCTCCGAGAGTGGACAGAACTTTCTCA > 1:2322801/1‑99 CACCCCGACAGCTAGCAGGCTGCCGGGGTGAATTTGCTGGGGAAGATACTACTATCAGTCGTTGCTGCAGTCTCCGAGAGTGGACAGAACTTTCTCAGCG > 2:642673/1‑100 ACCCCGACAGCTAGCAGGCTGCCGGGGTGAATTTGCTGGGGAAGATACTACTATCAGTCGTTGCTGCAGTCTCCGAGAGTGGACAGAACTTTCTCAGCGT > 2:157090/1‑100 CCCCGACAGCTAGCAGGCTGCCGGGGTGAATTTGCTGGGGAAGATACTACTATCAGTCGTTGCTGCAGTCTCCGAGAGTGGACAGAACTTTCTCAGCGTT > 2:94679/1‑100 CCCCGACAGCTAGCAGGCTGCCGGGGTGAATTTGCTGGGGAAGATACTACTATCAGTCGTTGCTGCAGTCTCCGAGAGTGGACAGAACTTTCTCAGCGTT > 1:978931/1‑100 CCCCGACAGCTAGCAGGCTGCCGGGGTGAATTTGCTGGGGAAGATACTACTATCAGTCGTTGCTGCAGTCTCCGAGAGTGGACAGAACTTTCTCAGCGTT > 2:879140/1‑100 CCCCGACAGCTAGCAGGCTGCCGGGGTGAATTTGCTGGGGAAGATACTACTATCAGTCGTTGCTGCAGTCTCCGAGAGTGGACAGAACTTTCTCAGCGTT > 2:680464/1‑100 CCCCGACAGCTAGCAGGCTGCCGGGGTGAATTTGCTGGGGAAGATACTACTATCAGTCGTTGCTGCAGTCTCCGAGAGTGGACAGAACTTTCTCAGCGTT > 2:570598/1‑100 CCCCGACAGCTAGCAGGCTGCCGGGGTGAATTTGCTGGGGAAGATACTACTATCAGTCGTTGCTGCAGTCTCCGAGAGTGGACAGAACTTTCTCAGCGTT > 2:606971/1‑100 CCGACAGCTAGCAGGCTGCCGGGGTGAATTTGCTGGGGAAGATACTACTATCAGTCGTTGCTGCAGTCTCCGAGAGTGGACAGAACTTTCTCAGCGTTCT > 1:1536919/1‑100 CGACAGCTAGCAGGCTGCCGGGGTGAATTTGCTGGGGAAGATACTACTATCAGTCGTTGCTGCAGTCTCCGAGAGTGGACAGAACTTTCTCAGCGTTCTT > 1:1847289/1‑100 CAGCTAGCAGGCTGCCGGGGGGAATTTGCTGGGGAAGATACTACTATCAGTCGTTGCTGCAGTCTCCGAGAGTGGACAGAACTTTCTCAGCGTTCTTCCG > 1:2031536/1‑100 GGCTGCCGGGGTGAATTTGCTGGGGAAGATACTACTATCAGTCGTTGCTGCAGTCTCCGAGAGTGGACAGAACTTTCTCAGCGTTCTTCCGGTCCGCAGT > 1:1129523/1‑100 GGGGTGAATTTGCTGGGGAAGATACTACTATCAGTCGTTGCTGCAGTCTCCGAGAGTGGACAGAACTTTCTCAGCGTTCTTCCGGTCCGCAGTGAAGGTC > 1:2137223/1‑100 GGGGTGAATTTGCTGGGGAAGATACTACTATCAGTCGTTGCTGCAGTCTCCGAGAGTGGACAGAACTTTCTCAGCGTTCTTCCGGTCCGCAGTGAAGGTC < 2:613100/100‑1 GGGGTGAATTTGCTGGGGAAGATACTACTATCAGTCGTTGCTGCAGTCTCCGAGAGTGGACAGAACTTTCTCAGCGTTCTTCCGGTCCGCAGTGAAGGTC > 2:319355/1‑100 GGGTGAATTTGCTGGGGAAGATACTACTATCAGTCGTTGCTGCACTCTCCGAGAGTGGACAGAACTTTCTCAGCGTTCTTCCGGTCCGCAGTGAAGGTC < 2:747971/99‑1 GGTGAATTTGCTGGGGAAGATACTACTATCAGTCGTTGCTGCAGTCTCCGAGAGTGGACCGAACTTTCTCAGCGTTCTTCCGGTCCGCAGTGCAGGTCCC > 1:609437/1‑100 GTGAATTTGCTGGGGAAGATACTACTATCAGTCGTTGCTGCAGTCTCCGAGAGTGGACAGAACTTTCTCAGCGTTCTTCCGGTCCGCAGTGAAGGTCCCT > 2:473339/1‑100 TGAATTTGCTGGGGAAGATACTACTATCAGTCGTTGCTGCAGTCTCCGAGAGTGGACAGAACTTTCTCAGCGTTCTTCCGGTCCGCAGTGAAGGTCCCTG > 2:1817414/1‑100 TGAATTTGCTGGGGAAGATACTACTATCAGTCGTTGCTGCAGTCTCCGAGAGTGGACAGAACTTTCTCAGCGTTCTTCCGGTCCGCAGTGAAGGTCCCTG > 2:1363766/1‑100 GAAGAACGCTGAGAAAGTTCTGTCCACTCTCGGAGACTGCAGCAACGACTGATAGTAGTATCTTCCCCAGCAAATTCACCCCGACAGCTAGCAGGCTGCCGGGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/265671‑265567‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggggtGAATTTGCTGGGGAAGATACTACTATCAGTCGTTGCTGCAGTCTCCGAGAGTGGACAGAACTTTCTCAGCGTTCTTCCGGTCCGCAGTGAAGGTCCCTG > NC_000913/265595‑265693 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |