New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 689300	NA (NA)	8 (0.080)	7/164	NT	NA	intergenic (‑287/+43)	insH1/lnt	IS5 transposase and trans‑activator/apolipoprotein N‑acyltransferase
	?	NC_000913	= 689331	NA (NA)					intergenic (‑318/+12)	insH1/lnt	IS5 transposase and trans‑activator/apolipoprotein N‑acyltransferase

GTTTCAGGGTTTGCCTTGTATAACAAAGCAATAGATGTGCCAAAGTTGGATAGGAGAATATTGTTATCCGGATAATGCACTGATGCCGCATCCGGTGAGcgtgccg‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/689202‑689300 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGTGCCGGAATACATCCCATATTTCGGCACGCTCACCGGATGCGGCATCAGTGCATTATCCGGATAACAATATTCTCCTATCCAACTTTGGCACATCTATTGCTTT  <  NC_000913/689331‑689226                                                                                                                                                                                                               GTTTCAGGGTTTGCCTTGTATAACAAAGCAATAGATGTGCCAAAGTTGGATAGGAGAATATTGTTAGCCGGATAATGCACTGATGCCGCATCCGGTGAGC                                                                                                           <  1:2219964/100‑1   TTCAGGGTTTGCCTTGTATAACAAAGCAATAGATGTGCCAAAGTTGGATAGGAGAATATTGTTATCCGGATAATGCACTGATGCCGCATCCGGTGAGCGT                                                                                                         >  2:2342289/1‑100    TCAGGGTTTGCCTTGTATAACAAAGCAATAGATGTGCCAAAGTTGGATAGGAGAATATTGTTATCCGGATAATGCACTGATGCCGCATCCGGTGAGCGTG                                                                                                        >  2:289522/1‑100    TCAGGGTTTGCCTTGTATAACAAAGCAATAGATGTGCCAAAGTTGGATAGGAGAATATTGTTATCCGGATAATGCACTGATGCCGCATCCGGTGAGCGTG                                                                                                        >  1:2218110/1‑100    TCAGGGTTTGCCTTGTATAACAAAGCAATAGATGTGCCAAAGTTGGATAGGAGAATATTGTTATCCGGATAATGCACTGATGCCGCATCCGGTGAGCGTG                                                                                                        >  1:2740964/1‑100     CAGGGTTTGCCTTGTATAACAAAGCAATAGATGTGCCAAAGTTGGATAGGAGAATATTGTTATCCGGATAATGCACTGATGCCGCATCCGGTGAGCGTGC                                                                                                       >  1:695093/1‑100      AGGGTTTGCCTTGTATAACAAAGCAATAGATGTGCCAAAGTTGGATAGGAGAATATTGTTATCCGGATAATGCACTGATGCCGCATCCGGTGAGCGTGCC                                                                                                      <  2:124562/100‑1       GGGTTTGCCTTGTATAACAAAGCAATAGATGTGCCAAAGTTGGATAGGAGAATATTGTTATCCGGATAATGCACTGATGCCGCATCCGGTGAGCGTGCCG                                                                                                     <  1:1919113/100‑1                              AATAGATGTGCCAAAGTTGGATAGGAGAATATTGTTATCCGGATAATGCACTGATGTCGCATCCGGTGAGCGTGCCGGAATACATCCCATATTTCGGCAC                                                                              <  2:2210521/100‑1                                TAGATGTGCCAAAGTTGGATAGGAGAATATTGTTATCCGGATAATGCACTGATGCCGCATCCGGTGAGCGTGCCGGAATACATCCCATATTTCGGCACGC                                                                            <  1:1672341/100‑1                                  GATGTGCCAAAGTTGGATAGGAGAATATTGTTATCCGGATAATGCACTGATGCCGCATCCGGTGAGCGTGCCGGAATACATCCCATATTTCGGCACGCTC                                                                          <  1:594186/100‑1                                    TGTGCCAAAGTTGGATAGGAGAATATTGTTATCCGGATAATGCACTGATGCCGCATCCGGTGAGCGTGCCGGAATACATCCCATATTGCGGCACGCTCAC                                                                        <  2:1905429/100‑1                                    TGTGCCAAAGTTGGATAGGAGAATATTGTTATCCGGATAATGCACTCATGCCCCATCCGCTGAGCGTGCCGGAATACATCCCATATTTCGGCACGCTCAC                                                                        <  1:2418668/100‑1                                       GCCAAAGTTGGATAGGAGAATATTGTTATCCGGATAATGCACTGATGCCGCATCCGGTGAGCGTGCCGGAATACATCCCATATTTCGGCACGCTCACCGG                                                                     <  2:2567904/100‑1                                         CAAAGTTGGATAGGAGAATATTGTTATCCGGATAATGCACTGATGCCGCATCCGGTGAGCGTGCCGGAATACATCCCATATTTCGGCACGCTCACCGGAT                                                                   <  2:1978954/100‑1                                              TTGGATAGGAGAATATTGTTATCCGGATAATGCACTGATGCCGCATCCGGTGAGCGTGCCGGAATACATCCCATATTTCGGCACGCTCACCGGATGCGGC                                                              <  2:2124805/100‑1                                                                                                    CGTGCCGGAATACATCCCATATTTCGGCACGCTCACCGGATGCGGCATCAGTGCATTATCCGGATAACAATATTCTCCTATCCAACTTTGGCACATCTAT        >  1:1098046/1‑100                                                                                                     GTGCCGGAATACATCCCATATTTCGGCACGCTCACCGGATGCGGCATCAGTGCATTATCCGGATAACAATATTCTCCTATCCAACTTTGGCACATCTATT       >  2:2893781/1‑100                                                                                                     GTGCCGGAATACATCCCATATTTCGGCACGCTCACCGGATGCGGCATCAGTGCATTATCCGGATAACAATATTCTCCTATCCAACTTTGGCACATCTATT       >  2:2218119/1‑100                                                                                                      TGCCGGAATACATCCCATATTTCGGCACGCTCACCGGATGCGGCATCAGTGCATTATCCGGATAACAATATTCTCCTATCCAACTTTGGCACATCTATTG      <  1:2584154/100‑1                                                                                                       GCCGGAATACATCCCATATTTCGGCACGCTCACCGGATGCGGCATCAGTGCATTATCCGGATAACAATATTCTCCTATCCAACTTTGGCACATCTATTGC     >  1:725527/1‑100                                                                                                       GCCGGAATACATCCCATATTTCGGCACGCTCACCGGATGCGGCATCAGTGCATTATCCGGATAACAATATTCTCCTATCCAACTTTGGCACATCTATTGC     <  2:350069/100‑1                                                                                                       GCCGGAATACATCCCATATTTCGGCACGCTCACCGGATGCGGCATCAGTGCATTATCCGGATAACAATATTCTCCTATCCAACTTTGGCACATCTATTGC     <  2:2849678/100‑1                                                                                                       GCCGGAATACATCCCATATTTCGGCACGCTCACCGGATGCGGCATCAGTGCATTATCCGGATAACAATATTCTCCTATCCAACTTTGGCACATCTATTGC     >  1:2104712/1‑100                                                                                                       GCCGGAATACATCCCATATTTCGGCACGCTCACCGGATGCGGCATCAGTGCATTATCCGGATAACAATATTCTCCTATCCAACTTTGGCACATCTATTGC     <  2:2698933/100‑1                                                                                                       GCCGGAATACATCCCATATTTCGGCACGCTCACCGGATGCGGCATCAGTGCATTATCCGGATAACAATATTCTCCTATCCAACTTTGGCACATCTATTGC     >  2:2740974/1‑100                                                                                                        CCGGAATACATCCCATATTTCGGCACGCTCACCGGATGCGGCATCAGTGCATTATCCGGATAACAATATTCTCCTATCCAACTTTGGCACATCTATTGCT    <  2:80064/100‑1                                                                                                        CCGGAATACATCCCATATTTCGGCACGCTCACCGGATGCGGCATCAGTGCATTATCCGGATAACAATATTCTCCTATCCAACTTTGGCACATCTATTGCT    >  1:289520/1‑100                                                                                                        CCGGAATACAGCCCATATTTCGGCACGCTCACCGGATGCGGCATCAGTGCATTATCCGGATAACAATATTCTCCTATCCAACTTTGGCACATCTATTGCT    <  1:1903920/100‑1                                                                                                         CGGAATACATCCCATATTTCGGCACGCTCACCGGATGCGGCATCAGTGCATTATCCGGATAACAATATTCTCCTATCCAACTTTGGCACATCTATTGCTT   >  1:2423313/1‑100                                                                                                         CGGAATACATCCCATATTTCGGCACGCTCACCGGATGCGGCATCAGTGCATTATCCGGATAACAATATTCTCCTATCCAACTTTGGCACATCTATTGCTT   >  2:558428/1‑100                                                                                                          GGAATACCTCCCATATTTCGTCACGCTCACCGGATGCGGCATCAGTGCATTATCCGGACAACAATATTCTCCTCTCCAACTTTGGCACAT            >  1:2645882/1‑90                                                                                                          GGAATACATCCCATATTTCGGCACGCTCACCGGATGCGGCATCAGTGCATTATCCGGATAACAATATTCTCCTATCCAACTTTGGCACATCTATTGCTTT  >  2:1934694/1‑100                                                                                                          GGAATACATCCCATATTTCGGCACGCTCACCGGATGCGGCATCAGTGCATTATCCGGATAACAATATTCTCCTATCCAACTTTGGCACATCTATTGCTTT  >  2:1934492/1‑100                                                                                                                                                                                                               GTTTCAGGGTTTGCCTTGTATAACAAAGCAATAGATGTGCCAAAGTTGGATAGGAGAATATTGTTATCCGGATAATGCACTGATGCCGCATCCGGTGAGcgtgccg‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/689202‑689300 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGTGCCGGAATACATCCCATATTTCGGCACGCTCACCGGATGCGGCATCAGTGCATTATCCGGATAACAATATTCTCCTATCCAACTTTGGCACATCTATTGCTTT  <  NC_000913/689331‑689226

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.