New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 126915934 (0.330)14 (0.140) 4/166 NT 22.6% intergenic (+140/+9) kdsA/ldrA 3‑deoxy‑D‑manno‑octulosonate 8‑phosphate synthase/toxic polypeptide, small
?NC_000913 = 1269658 64 (0.660)intergenic (‑383/+45) ldrA/ldrB toxic polypeptide, small/toxic polypeptide, small

GCGTTAAGACTTTTTTCATGGGTGCCGGATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1269055‑1269159
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcccgAAACCGGCCGCAGGGGTAACAGCCTGCGGCCATTTTTGTCTTTATCACTTCCACAAGTAAATATTGGCAACCCGAGCTGGAAGCCTCATCCAGAGCAC  <  NC_000913/1269658‑1269561
                                                                                                                                                                                                           
GCGTTAAGACTTTTTTCCTGGGTGCCGGATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGAC                                                                                                         >  2:1546573/1‑100
GCGTTAAGACTTTTTTCATGGGTGCCGGATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGAC                                                                                                         >  1:2405837/1‑100
 CGTTAAGACTTTTTTCATGGGTGCCGGATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACG                                                                                                        >  2:280719/1‑100
 CGTTAAGACTTTTTTCATGGGTGCCGGATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACG                                                                                                        >  2:570934/1‑100
 CGTTAAGACTTTTTTCATGGGTGCCGGATACAAAAAAGGCCGCAGGCTGTTACCCCCGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACG                                                                                                        >  1:2783340/1‑100
  GTTAAGACTTTTTTCATGGGTGCCGGATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGC                                                                                                       >  2:1550895/1‑100
   nTAAGACTTTTTTCATGGGTGCCGGATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGAATATTGCCATCACGGCAGCCTGACGCC                                                                                                      >  2:400464/2‑100
    TAAGACTTTTTTCATGGGTGCCGGATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCC                                                                                                     >  2:351147/1‑100
    TAAGACTTTTTTCATGGGTGCCGGATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCC                                                                                                     <  1:1932755/100‑1
    TAAGACTTTTTTCATGGGTGCCGGATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCC                                                                                                     <  2:963225/100‑1
                                                            ggtctGTTTCGGGCGCATATTGCCATTGCGGCAGCCTTACGCCCGATACCGGCCGCAGGGGTAACAGCCTGCGGCCATTTTTGTCTTTATCACTTC                                                 <  1:2441270/91‑1
                                                            GGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCGAAACCGGCCGCAGGGGTAACAGCCTGCGGCCATTTTTGTCTTTATCACTTCCACA                                             >  2:112546/1‑100
                                                                GGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCGAAACCGGCCGCAGGGGTAACAGCCTGCGGCCATTTTTGTCTTTATCTCTTCCACAAGT                                          >  1:117902/1‑99
                                                                GGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCGAAACCGGCCGCAGGGGTAACAGCCTGCGGCCATTTTTGTCTTTATCACTTCCACAAGTA                                         >  2:229071/1‑100
                                                                GGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCGAAACCGGCCGCAGGGGTAACAGCCTGCGGCCATTTTTGTCTTTATCACTTCCACAAGTA                                         >  2:1829291/1‑100
                                                                 GTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCGAAACCGGCCGCAGGGGTAACAGCCTGCGGCCATTTTTGTCTTTATCACTTCCACAAGTAA                                        >  2:612314/1‑100
                                                                 GTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCGAAACCGGCCGCAGGGGTAACAGCCTGCGGCCATTTTTGTCTTTATCACTTCCACAAGTAA                                        >  1:1082323/1‑100
                                                                 GTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCGAAACCGGCCGCAGGGGTAACAGCCTGCGGCCATTTTTGTCTTTATCACTTCCACAAGTAA                                        >  2:2090560/1‑100
                                                                 GTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCGAAACCGGCCGCAGGGGTAACAGCCTGCGGCCATTTTTGTCTTTATCACTTCCACAAGTAA                                        >  1:1035925/1‑100
                                                                 GTTTCGGGCGCATATTGCCATCACGGCAGACTGACGCCCGAAACCGGCCGCAGGGGTAACCGCCTGCGGCCATTTTTGTCTTTATCACTTCCACAAGTA                                         >  1:685108/1‑99
                                                                  TTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCGAAACCGGCCGCAGGGGTAACAGCCTGCGGCCATTTTTGTCTTTATCACTTCCACAAGTAAA                                       >  1:2157312/1‑100
                                                                    TCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCGAAACCGGCCGCAGGGGTAACAGCCTGCGGCCATTTTTGTCTTTATCTCTTCCACAAGTAAATA                                     >  2:718863/1‑100
                                                                     CGGGCGCATATTGCCATCACGGCAGCCTGACGCCCGAAACCGGCCGCAGGGGTAACAGCCTGCGGCCATTTTTGTCTTTATCTCTTCCACAAGTAAATAT                                    >  2:2411793/1‑100
                                                                      GGGCGCATATTGCCATCACGGCAGCCTGACGCCCGAAACCGGCCGCAGGGGTAACAGCCTGCGGCCATTTTTGTCTTTATCTCTTCCACAAGTAAATATT                                   >  2:1010781/1‑100
                                                                                                   CGCCCGAAACCGGCCGCAGGGGTAACAGCCTGCGGCCATTTTTGTCTTTATCACTTCCACAAGTAAATATTGGCAACCCGAGCTGGAAGCCTCATCCAGA      <  2:768694/100‑1
                                                                                                   CGCCCGAAACCGGCCGCAGGGGTAACAGCCTGCGGCCATTTTTGTCTTTATCACTTCCACAAGTAAATATTGGCAACCCGAGCTGGAAGCCTCATCCAGA      <  1:751381/100‑1
                                                                                                   CGCCCGAAACCGGCCGCAGGGGTAACAGCCTGCGGCCATTTTTGTCTTTATCACTTCCACAAGTAAATATTGGCAACCCGAGCTGGAAGCCTCATCCAGA      >  1:434308/1‑100
                                                                                                    GCCCGAAACCGGCCGCAGGGGTAACAGCCTGCGGCCATTTTTGTCTTTATCACTTCCACAAGTAAATATTGGCAACCCGAGCTGGAAGCCTCATCCAGAG     >  2:130344/1‑100
                                                                                                    GCCCGAAACCGGCCGCAGGGGTAACAGCCTGCGGCCATTTTTGTCTTTATCACTTCCACAAGTAAATATTGGCAACCCGAGCTGGAAGCCTCATCCAGAG     <  2:2288944/100‑1
                                                                                                    GCCCGAAACCGGCCGCAGGGGTAACAGCCTGCGGCCATTTTTGTCTTTATCACTTCCACAAGTAAATATTGGCAACCCGAGCTGGAAGCCTCATCCAGAG     >  1:2412056/1‑100
                                                                                                     CCCGAAACCGGCCGCAGGGGTAACAGCCTGCGGCCATTTTTGTCTTTATCACTTCCACAAGTAAATATTGGCAACCCGAGCTGGAAGCCTCATCCAGAGC    <  2:1397446/100‑1
                                                                                                     CCCGAAACCGGCCGCAGGGGTAACAGCCTGCGGCCATTTTTGTCTTTATCACTTCCACAAGTAAATATTGGCAACCCGAGCTGGAAGCCTCATCCAGAGC    >  2:272013/1‑100
                                                                                                     CCCGAAACCGGCCGCAGGGGTAACAGCCTGCGGCCATTTTTGTCTTTATCACTTCCACAAGTAAATATTGGCAACCCGAGCTGGAAGCCTCATCCAGAGC    >  2:1240553/1‑100
                                                                                                      CCGAAACCGGCCGCAGGGGTAACAGCCTGCGGCCATTTTTTTTTTTATTACTTCCACAAGTAAATATTGGCAACCCGAGCTGGAAGCCTCATCCAGAGCA   >  1:573604/1‑100
                                                                                                      CCGAAACCGGCCGCAGGGGTAACAGCCTGCGGCCATTTTTGTCTTTATCACTTCCACAAGTAAATATTGGCAACCCGAGCTTGAAGCCTCATCCAGAGC    <  1:387082/99‑1
                                                                                                      CCGAAACCGGCCGCAGGGGTAACAGCCTGCGGCCATTTTTGTCTTTATCACTTCCACAAGTAAATATTGGCAACCCGAGCTGGAAGCCTCATCCAGAGCA   >  2:1220346/1‑100
                                                                                                       CGAAACCGGCCGCAGGGGTAACAGCCTGCGGCCATTTTTGTCTTTATCACTTCCACAAGTAAATATTGGCAACCCGAGCTGGAAGCCTCATCCAGAGCAC  <  2:2653616/100‑1
                                                                                                                                                                                                           
GCGTTAAGACTTTTTTCATGGGTGCCGGATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1269055‑1269159
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcccgAAACCGGCCGCAGGGGTAACAGCCTGCGGCCATTTTTGTCTTTATCACTTCCACAAGTAAATATTGGCAACCCGAGCTGGAAGCCTCATCCAGAGCAC  <  NC_000913/1269658‑1269561

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.