New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1295032	81 (0.780)	16 (0.160)	12/168	NT	17.1%	noncoding (374/980 nt)	ISZ	repeat region
	?	NC_000913	= 1295065	79 (0.810)					noncoding (341/980 nt)	ISZ	repeat region

CATCAATGGCAAAAAGTTGCAGGCCGTGCCAGTCATCCTTCAGGTAACGTTCCGCGCCCCTGTCTGTGCGGTCTGGCGGAAGAGCCATTCCACTGGGGCGG‑‑CCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1294929‑1295032 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gg‑‑cccGCAGCGCTGTCACCCAGGCGCGTCAGCGCGTGGGGGCCGCCCCAGTGGAATGGCTCTTCCGCCAGACCGCACAGACAGGGGCGCGGAACGTTACCTG  <  NC_000913/1295065‑1294969                                                                                                                                                                                                             CATCAATGGCAAAAAGTTGCAGGCCGTGCCAGTCATCCTTCAGGTAACGTTCCGCGCCCCTGTCTGTGCGGTCTGGCGGAAGAGCCATTCCACTGGGGCG                                                                                                         >  1:106750/1‑100    CAATGGCAAAAAGTTGCAGGCCGTGCCAGTCATCCTTCAGGTAACGTTCCGCGCCCCTGTCTGTGCGGTCTGGCGGAAGAGCCATTCCACTGGGGCGG‑‑CC                                                                                                    <  2:587462/100‑1    CAATGGCAAAAAGTTGCAGGCCGTGCCAGTCATCCTTCAGATAACGTTCAGCGCCCCTGTCTGTGCGGTCTGGCGGAAGAGCCATTCCACTGGGGCGG‑‑CC                                                                                                    >  1:370601/1‑100        GGCAAAAAGTTGCAGGCCGTGCCAGTCATCCTTCCGGTAACGTTCCGCGCCCCTGTCTGTGCGGTCTGGCGGAAGAGCCATTCCACTGGGGCGG‑‑Cgccc                                                                                                 >  1:2208038/1‑95                         CGTGCCAGTCATCCTTCAGGTAACGTTCCGCGCCCCTGTCTGTGCGGTCTGGCGGAAGAGCCATTCCACTGGGGCGG‑‑CCCGCAGCGCTGTCACCCAGGCG                                                                               >  2:293030/1‑100                                GTCATCCTTCAGGTAACGTTCCGCGCCCCTGTCTGTGCGGTCTGGCGGAAGAGCCATTCCACTGGGGCGG‑‑CCCGCAGCGCTGTCACCCAGGCGCGTCAGC                                                                        >  2:1348291/1‑100                                         CAGGTAACGTTCCGCGCCCCTGTCTGTGCGGTCTGGCGGAAGAGCCATTCCACTGGGGCGG‑‑CCCGCAGCGCTGTCACCCAGGCGCGTCAGCGCGTGGGGG                                                               <  1:2822604/100‑1                                          AGGTAACGTTCCGCGCCCCTGTCTGTGCGGTCTGGCGGAAGAGCCATTCCACTGGGGCGG‑‑CCCGCAGCGCTGTCACCCAGGCGCGTCAGCGCGTGGGGGC                                                              <  1:1538397/100‑1                                          AGGTAACGTTCCGCGCCCCTGTCTGTGCGGTCTGGCGGAAGAGCCATTCCACTGGGGCGG‑‑CCCGCAGCGCTGTCACCCAGGCGCGTCAGCGCGTGGGGGC                                                              <  2:1318509/100‑1                                          AGGTAACGTTCCGCGCCCCTGTCTGTGCGGTCTGGCGGAAGAGCCATTCCACTGGGGCGG‑‑CCCGCAGCGCTGTCACCCAGGCGCGTCAGCGCGTGGGGGC                                                              <  1:311750/100‑1                                          AGGTAACGTTCCGCGCCCCTGTCTGTGCGGTCTGGCGGAAGAGCCATTCCACTGGGGCGG‑‑CCCGCAGCGCTGTCACCCAGGCGCGTCAGCGCGTGGGGGC                                                              <  1:293028/100‑1                                           GGTAACGTTCCGCGCCCCTGTCTGTGCGGTCTGGCGGAAGAGCCATTCCACTGGGGCGG‑‑CCCGCAGCGCTGTCACCCAGGCGCGTCAGCGCGTGGGGGCC                                                             <  1:1348289/100‑1                                           GGTAACGTTCCGCGCCCCTGTCTGTGCGGTCTGGCGGAAGAGCCATTCCACTGGGGCGG‑‑CCCGCAGCGCTGTCACCCAGGCGCGTCAGCGCGTGGGGGCC                                                             <  2:827558/100‑1                                             TAACGTTCCGCGCCCCTGTCTGTGCGGTCTGGCGGAAGAGCCATTCCACTGGGGCGG‑‑CCCGCAGCGCTGTCACCCAGGCGCGTCAGCGCGTGGGGGCCGC                                                           <  2:1031062/100‑1                                              AACGTTCCGCGCCCCTGTCTGTGCGGTCTGGCGGAAGAGCCATTCCACTGGGGCGG‑‑CCCGCAGCGCTGTCACCCAGGCGCGTCAGCGCGTGGGGGCCGCC                                                          <  2:1569813/100‑1                                                CGTTCCGCGCCCCTGTCTGTGCGGTCTGGCGGAAGAGCCATTCCACTGGGGCGG‑‑CCCGCAGCGCTGTCACCCAGGCGCGTCAGCGCGTGGGGGCCGCCCC                                                        <  2:139216/100‑1                                                    CCGCGCCCCTGTCTGTGCGGTCTGGCGGAAGAGCCATTCCACTGGGGCGG‑‑CCCGCAGCGCTGTCACCCAGGCGCGTCAGCGCGTGGGGGCCGCCCCAGTG                                                    <  2:1280011/100‑1                                                     CGCGCCCCTGTCTGTGCGGTCTGGCGGAAGAGCCATTCCACTGGGGCGG‑‑CCCGCAGCGCTGTCACCCAGGCGCGTCAGCGCGTGGGGGCCGCCCCAGTGG                                                   <  1:1835400/100‑1                                                            CTGTCTGTGCGGTCTGGCGGAAGAGCCATTCCACTGGGGCGGCCCCCGCAGCGCTGTCACCCAGGCGCGTCAGCGCGTGGGGGCCGCCCCAGTGGAATGG                                              <  1:2100304/100‑1                                                             TGTCTGTGCGGTCTGGCGGAAGAGCCATTCCACTGGGGCGG‑‑CCCGCAGCGCTGTCACCCAGGCGCGTCAGCGCGTGGGGGCCGCCCCAGTGGAATGGCTC                                           <  1:2280318/100‑1                                                                                                    GG‑‑CCCGCAGCGCTGTCACCCAGGCGCGTCAGCGCGTGGGGGCCGCCCCAGTGGAATGGCTCTTCCGCCAGACCGCACAGACAGGGGCGCGGAACGTTACC    <  1:2258767/100‑1                                                                                                    GG‑‑CCCGCAGCGCTGTCACCCAGGCGCGTCAGCGCGTGGGGGCCGCCCCAGTGGAATGGCTCTTCCGCCAGACCGCACAGACAGGGGCGCGGAACGTTAC     >  2:32869/1‑99                                                                                                    GG‑‑CCCGAAGCGCTGTCACCCAGGCGCGTCAGCGCGTGGGGGCCGCCCCAGTGGAATGGCTCTTCCGCCAGACCGCACAGACAGGGGCGCGGAACGTTACC    <  1:2435675/100‑1                                                                                                     G‑‑CCCGCAGCGCTGTCACCCAGGCGCGTCAGCGCGTGGGGGCCGCCCCAGTGGAATGGCTCTTCCGCCAGACCGCACAGACAGGGGCGCGGAACGTTACCT   <  1:2048747/100‑1                                                                                                     G‑‑CCCGCAGCGCTGTCACCCAGGCGCGTCAGCGCGTGGGGGCCGCCCCAGTGGAATGGCTCTTCCGCCAGACCGCACAGACAGGGGCGCGGAACGTTACCT   <  2:894008/100‑1                                                                                                        CCCGCAGCGCTGTCACCCAGGCGCGTCAGCGCGTGGGGGCCGCCCCAGTGGAATGGCTCTTCCGCCAGACCGCACAGACAGGGGCGCGGAACGTTACCTG  >  1:1538605/1‑100                                                                                                                                                                                                             CATCAATGGCAAAAAGTTGCAGGCCGTGCCAGTCATCCTTCAGGTAACGTTCCGCGCCCCTGTCTGTGCGGTCTGGCGGAAGAGCCATTCCACTGGGGCGG‑‑CCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1294929‑1295032 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gg‑‑cccGCAGCGCTGTCACCCAGGCGCGTCAGCGCGTGGGGGCCGCCCCAGTGGAATGGCTCTTCCGCCAGACCGCACAGACAGGGGCGCGGAACGTTACCTG  <  NC_000913/1295065‑1294969

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.