| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1999541 = | 94 (0.910) | 16 (0.170) | 10/162 | NT | 15.4% | intergenic (‑61/+44) | dcyD/fliY | D‑cysteine desulfhydrase, PLP‑dependent/cystine transporter subunit |
| ? | NC_000913 | 1999572 = | 90 (0.950) | intergenic (‑92/+13) | dcyD/fliY | D‑cysteine desulfhydrase, PLP‑dependent/cystine transporter subunit | |||||
CAAAAAGATGGCACTCTGCAAGCCCTTTCCGAAAAATGGTTTGGTGCTGATGTGACCAAATAATCAGCATAATGACAAAAAAGGGCGCTTTCACTAGCG‑CC‑TTTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/1999647‑1999541‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cc‑ttttttGTCATTATGCTGATTATTTGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCAGAGTGCCATCTTTTTGCATTTCCGCAATTGCATCATTC > NC_000913/1999572‑1999669 CAAAAAGATGGCACTCTGCAAGCCCTTTCCGAAAAATGGTTTGGTGCTGATGTGACCAAATAATCAGCATAATGACAAAAAAGGGCGCTTTCACTAGCG‑C > 1:1714477/1‑100CAAAAAGATGGCACTCTGCAAGCCCTTTCCGAAAAATGGTTTGGTGCTGATGTGACCAAATAATCAGCATAATGACAAAAAAGGGCGCTTTCACTAGCG‑C > 1:2135482/1‑100CAAAAAGATGGCACTCTGCAAGCCCTTTCCGAAAAATGGTTTGGTGCTGATGTGACCAAATAATCAGCATAATGACAAAAAAGGGCGCTTTCACTAGCG‑C > 2:1983431/1‑100 AAAAGATGGCACTCTGCAAGCCCTTTCCGAAAAATGGTTTGGTGCTGATGTGACCAAATAATCAGCATAATGACAAAAAAGGGCGCTTTCACTAGCG‑CC‑T > 2:375411/1‑100 AGATGGCACTCTGCAAGCCCTTTCCGAAAAATGGTTTGGTGCTGATGTGACCAAATATTCAGCATAACGACAAAAAAGGGCGCTTTCACTAGCG‑CC‑TTTT > 1:2042798/1‑100 GATGGCACTCTGCAAGCCCTTTCCGAAAAATGGTTTGGTGCTGATGTGACCAAATAATCAGCATAATGACAAAAAAGGGCGCTTTCACTAGCG‑CC‑TTTTT > 2:728225/1‑100 GTGACCAAATAATCAGCATAATGACAAAAAAGGGCGCATTCACTAGCGCCC‑TTTTTTGTCATTATGCTGATTATTTGGTCACATCAGCACCAAACCATT > 2:251887/1‑99 CCAAATAATCAGCATAATGACAAAAAAGGGCGCTTTCACTAGCG‑CCTTTTTTTGTCATTATGCTGATTATTTGGTCACATCAGCACCAAACCATTTTTCG < 2:367040/100‑1 ATGACAAAAAAGGGCGCTTTCACTAGCG‑CC‑TTTTTTGTCATTATGCTGATTATTTGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCAGAGT > 1:1658440/1‑100 ATGACAAAAAAGGGCGCTTTCACTAGCG‑CC‑TTTTTTGTCATTATGCTGATTATTTGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCA > 1:1434337/1‑96 GACAAAAAAGGGCGCTTTCACTAGCG‑CCTTTTTTTGTCATTATGCTGATTATTTGGTCACATCAGCGCCAAACCATTTTTCGGAAAGGGCTTGCAGAGTG > 1:124649/1‑100 GACAAAAAAGGGCGCTTTCACTAGCG‑CCTTTTTTTGTCATTATGCTGATTATTTGGTCACATCAGCACTAAACCATTTTTCGGAATGGGCTTGCAGAGTG > 1:1991954/1‑100 GACAAAAAAGGGCGCTTTCACTAGCG‑CCTTTTTTTGTCATTATGCTGATTATTTGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCAGAGTG > 2:144164/1‑100 GACAAAAAAGGGCGCTTTCACTAGCG‑CC‑TTTTTTGTCATTATGCTGATTATTTGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCAGAGTGC > 1:2526222/1‑100 ACAAAAAAGGGCGCTTTCACTAGCG‑CCTTTTTTTGTCATTATGCTGATTATTTGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCAGAGTGC > 2:1576916/1‑100 CAAAAAAAGGCGCTTTCACTAGCGCCC‑TTTTTTGTCATTATGCTGATTATTTGGTCACATCAGCAGCAAACCATTTTTCGGAAAGGGCTTGCAGAGTGCC > 1:1524673/1‑100 CAAAAAAAGGCGCTTTCACTAGCG‑CC‑TTTTTTGTCATTATGCTGATTATTAGGTCACCTCAATACCAACCCATTTTTCGGAAAGGGCTTGCAG > 1:1823353/1‑93 AAAAAGGGCGCTTTCACTAGCGCCC‑TTTTTTGTCATTATGCTGATTATTTGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCAGAGTGCCAT > 2:899038/1‑100 AAAAAGGGCGCTTTCACTAGCG‑CCTTTTTTTGTCATTATGCTGATTATTTGGTCACATCAGCGCCAAACCATTTTTCGGAAAGGGCTTGCAGAGTGCCAT > 2:447153/1‑100 AAAGGGCGCTTTCACTAGCG‑CCTTTTTTTGTCATTATGCTGATTATTTGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCAGAGTGCCATCT > 2:2067287/1‑100 GGGCGCTTTCACTAGCG‑CC‑TTTTTTGTCATTATGCTGATTATTTGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCAGAGTGCCATCTTTTT < 2:2526233/100‑1 GCGCTTTCACTAGCG‑CCTTTTTTTGTCATTATGCTGATTATTTGGTCACATCAGCGCCAAACCATTTTTCGGAAAGGGCTTGCAGAGTGCCATCTTTTTG < 2:124650/100‑1 CC‑TTTTTTGTCATTATGCTGATTATTTGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCAGAGTGCCATCTTTTTGCATTTCCGCAATTGCA < 1:347656/100‑1 CC‑TTTTTTGTCATTATGCTGATTATTTGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCAGAGTGCCATCTTTTTGCATTTCCGCAATTGC < 1:2140744/99‑1 TTTTTTGTCATTATGCTGATTATTTGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCAGAGTGCCATCTTTTTGCATTTCCGCAATTGCATC < 2:2432390/100‑1 TTGTCATTATGCTGATTATTTGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCAGAGTGCCATCTTTTTGCATTTCCGCAATTGCATCATTC < 2:2681160/100‑1 CAAAAAGATGGCACTCTGCAAGCCCTTTCCGAAAAATGGTTTGGTGCTGATGTGACCAAATAATCAGCATAATGACAAAAAAGGGCGCTTTCACTAGCG‑CC‑TTTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/1999647‑1999541‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cc‑ttttttGTCATTATGCTGATTATTTGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCAGAGTGCCATCTTTTTGCATTTCCGCAATTGCATCATTC > NC_000913/1999572‑1999669 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |