New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 2568139 =NA (NA)9 (0.090) 6/164 NT NA noncoding (1/183 nt) REP178 (repetitive extragenic palindromic) element; contains 4 REP sequences REP178 (repetitive extragenic palindromic) element; contains 4 REP sequences
?NC_000913 2568169 = NA (NA)noncoding (31/183 nt) REP178 (repetitive extragenic palindromic) element; contains 4 REP sequences REP178 (repetitive extragenic palindromic) element; contains 4 REP sequences

Only 100 of 169 total aligned reads displayed.

ATCCTGTCTACGGCAGCTATCAGCATAAAGAACATCATGATGTACATGATGATTTCGTTAATTCCCATCGCCTTTACTCCCTGTTAGTTGTTATTTATTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCCGTAGGCTGGATAAGACGCGGCAAGCGTCGCATCCGGCAATTGCACCGCGCCACT  >  NC_000913/2568040‑2568238
                                                                                                   |                                                                                                   
aTCCTGTCTACGGCAGCTATCAGCATAAAGAACATCATGATGTGCATGATGATTTCGTTAATTCCCATCGCCTTTACTCCCTGTTAGTTGTTATTTATTg                                                                                                     >  1:2707387/1‑100 (MQ=255)
aTCCTGTCTACGGCAGCTATCAGCATAAAGAACATCATGATGTACATGATGATTTCGTTAATTCCCATCGCCTTTACTCCCTGTTAGTTGTTATTTATTg                                                                                                     <  1:2805825/100‑1 (MQ=255)
aTCCTGTCTACGGCAGCTATCAGCATAAAGAACATCATGATGTACATGATGATTTCGTTAATTCCCATCGCCTTTACTCCCTGTTAGTTGTTATTTATTg                                                                                                     >  2:25935/1‑100 (MQ=255)
  ggataaggcgttcacgccgcatccgccagtggcgcggtgcaattgccggctgcgacgcttgccgcgtcttatccagcctacgggaatgcacatgtagGGc                                                                                                   <  1:2899975‑M1/3‑1 (MQ=255)
  ggataaggcgttcacgccgcatccgccagtggcgcggtgcaattgccggatgcgacgcttgccgcgtcttatccagcctacgggattgcacatgtagGGc                                                                                                   >  2:265589‑M1/98‑100 (MQ=255)
  ggataaggcgttcacgccgcatccgccagtggcgcggtgcaattgccggatgcgacgcttgccgcgtcttatccagcctacgggattgcacatgtagGGc                                                                                                   >  2:1311645‑M1/98‑100 (MQ=255)
  ccTGTCTACGGCAGCTATCAGCATAAAGAACATCATGATGTACATGATGATTTCGTTAATTCCCATCGCCTTTACTCCCTGTTAGTTGTTATTTATTGGc                                                                                                   <  1:1394576/100‑1 (MQ=255)
  ccTGTCTACGGCAGCTATCAGCATAAAGAACATCATGATGTACATGATGATTTCGTTAATTCCCATCGCCTTTACTCCCTGTTAGTTGTTATTTATTGGc                                                                                                   <  1:2328230/100‑1 (MQ=255)
  ccTGTCTACGGCAGCTATCAGCATAAAGAACATCATGATGTACATGATGATTTCGTTAATTCCCATCGCCTTTACTCCCTGTTAGTTGTTATTTATTGGc                                                                                                   >  2:150860/1‑100 (MQ=255)
   cTGTCTACGGCAGCTATCAGCATAAAGAACATCATGATGTACATGATGATTTCGTTAATTCCCATCGCCTTTACTCCCTGTTAGTTGTTATTTATTGGCg                                                                                                  <  1:1295272/100‑1 (MQ=255)
    ataaggcgttcacgccgcatccgccagtggcgcggtgcaattgccggatgcgacgcttgccgcgtcttatccagcctccgggattgcacatgtagGGCg                                                                                                  <  1:418560‑M1/4‑1 (MQ=255)
    ataaggcgttcacgccgcatccgccagtggcgcggtgcaattgccggatgcgacgcttgccgcgtcttatccagcctacgggattgcacatgtagGGCgg                                                                                                 >  2:1030717‑M1/96‑100 (MQ=255)
     taaggcgttcacgccgcatccgccagtggcgcggtgcaattgccggatgcgacgcttgccgcgtcttatccagcctacgggattgcacatgtagGGCGGa                                                                                                <  2:2449538‑M1/6‑1 (MQ=255)
     taaggcgttcacgccgcatccgccagtggcgcggtgcaattgccggatgcgacgcttgccgcgtcttatccagcctacgggattgcacatgtagGGCGGa                                                                                                >  2:2737339‑M1/95‑100 (MQ=255)
     gTCTACGGCAGCTATCAGCCTAAAGAACATCATGATATACATGATGATTTCGTTAATTCCCATCGACTTTACTCCCTGTTAGTTGTTATTTATTGGCg                                                                                                  >  1:714578/1‑98 (MQ=255)
           ggCAGCTATCAGCATAAAGAACATCATGATGTACATGATGATTTCGTTAATTCCCATCGCCTTTACTCCCTGTTAGTTGTTATTTATTGGCGGATgcggc                                                                                          >  1:2402553/1‑100 (MQ=255)
           ggCAGCTATCAGCATAAAGAACATCATGATGTACATGATGATTTCGTTAATTCCCATCGCCTTTACTCCCTGTTAGTTGTTATTTATTGGCGGATgcggc                                                                                          <  1:970956/100‑1 (MQ=255)
           ggCAGCTATCAGCATAAAGAACATCATGATGTACATGATGATTTCGTTAATTCCCATCGCCTTTACTCCCTGTTAGTTGTTATTTATTGGCGGATgcggc                                                                                          <  2:2351341/100‑1 (MQ=255)
               gCTATCAGCATAAAGAACATCATGATGTACATGATGATTTCGTTAATTCCCATCGCCTTTACTCCCTGTTAGTTGTTATTTATTGGCGGATGCGGCGTaa                                                                                      >  1:1188338/1‑100 (MQ=255)
               gCTAACAGCATAAAGAACATCATGATGTACATGATGATTTCGTTAATTCCCATCGCTTTAACTCTCTGTTAGTTGTTATTTATTGGCGGTTGCGGCGTa                                                                                       <  1:1028491/99‑1 (MQ=255)
                cTATCAGCATAAAGAACATCATGATGTACATGATGATTTCGTTAATTCCCATCGCCTTTACTCCCTGTTAGTTGTTATTTATTGGCGGATGCGGCGTaaa                                                                                     >  1:626814/1‑100 (MQ=255)
                  aTCAGCATAAAGAACATCATGATGTACATGATGATTTCGTTAATTCCCATCGCCTTTACTCCCTGTTAGTTGTTATTTATTGGCGGATGCGGCGTAAACg                                                                                   >  2:2589582/1‑100 (MQ=255)
                    cAGCATAAAGAACATCATGATGTACATGATGATTTCGTTAATTCCCATCGCCTTTACTCCCTGTTAGTTGTTATTTATTGGCGGATGCGGCGTAAACGcc                                                                                 >  2:2832358/1‑100 (MQ=255)
                     aGCATAAAGAACATCATGATGTACATGATGGTTTCGTTAATTCCCATCGCCTTTACTCCCTGTTAGTTGTTATTTATTGGCGGATGCGGCGTAAACGcc                                                                                 >  1:1288040/1‑99 (MQ=255)
                     aGCATAAAGAACATCATGATGTACATGATGATTTCGTTAATTCCCATCGCCTTTACTCCCTGTTAGTTGTTATTTATTGGCGGATGCGGCGTAAACGCCt                                                                                >  2:487020/1‑100 (MQ=255)
                       cATAAAGAACATCATGATGTACATGATGATTTCGTTAATTCCCATCGCCTTTACTCCCTGTTAGTTGTTATTTATTGGCGGATGCGGCGTAAACGCCTTa                                                                              >  1:2825510/1‑100 (MQ=255)
                        aTAAAGAACATCATGATGTACATGATGATTTCGTTAATTCCCATCGCCTTTACTCCCTGTTAGTTGTTATTTATTGGCGGATGCGGCGTAAACGCCTTAt                                                                             >  2:2051951/1‑100 (MQ=255)
                        aTAAAGAACATCATGATGTACATGATGATTTCGTTAATTCCCATCGCCTTTACTCCCTGTTAGTTGTTATTTATTGGCGGATGCGGCGTAAACGCCTTAt                                                                             >  2:2900088/1‑100 (MQ=255)
                         tAAAGAACATCATGATGTACATGATGATTTCGTTAATTCCCATCGCCTTTACTCCCTGTTAGTTGTTATTTATTGGCGGATGCGGCGTAAACGCCTTATc                                                                            >  1:2648767/1‑100 (MQ=255)
                         tAAAGAACATCATGATGTACATGATGATTTCGTTAATTCCCATCGCCTTTACTCCCTGTTAGTTGTTATTTATTGGCGGATGCGGCGTAAACGCCTTATc                                                                            >  2:1707893/1‑100 (MQ=255)
                          gccagtggcgcggtgcaattgccggatgcgacgcttgccgcgtcttatccagcctacgggattgcacatgtagGGCGGATGCGGCGTAAACGCCTTATcc                                                                           >  2:937374‑M1/74‑100 (MQ=255)
                          gccagtggcgcggtgcaattgccggatgcgacgcttgccgcgtcttatccagcctacgggattgcacatgtagGGCGGATGCGGCGTAAACGCCTTATcc                                                                           >  1:2474364‑M1/74‑100 (MQ=255)
                          gccagtggcgcggtgcaattgccggatgcgacgcttgccgcgtcttatccagcctacgggattgcacatgtagGGCGGATGCGGCGTAAACGCCTTATc                                                                            >  1:1234256‑M1/74‑99 (MQ=255)
                          aaaGAACATCATGATGTACATGATGATTTCGTTAATTCCCATCGCCTTTACTCCCTGTTAGTTGTTATTTCTTGGCGGATGCGGCGTAAACGCCTTATcc                                                                           >  2:167509/1‑100 (MQ=255)
                            cagtggcgcggtgcaattgccggatgcgacgcttgccgcgtcttatccagcctacgggattgcacatgtagGGCGGATGCGGCGTAAACGCCTTATCCGc                                                                         >  2:1472392‑M1/72‑100 (MQ=255)
                            aGAACATCATGATGTACATGATGATTTCGTTAATTCCCATCGCCTTTACTCCCTGTTCGTTGTTATTTATTGCCGGATGCGGCGTAAACGCCTTATCCGc                                                                         >  1:1386225/1‑100 (MQ=255)
                            aGAACATCATGATGTACATGATGATTTCGTTAATTCCCATCGCCTTTACTCCCTGTTAGTTGTTATTTATTGGCGGATGCGGCGTAAACGCCTTATCCGc                                                                         >  1:1467455/1‑100 (MQ=255)
                             gAACATCATGATGTACATGATGATTTCGTTAATTCCCATCGCCTTTACTCCCTGTTAGTTGTTATTTATTGGCGGATAAGGCGTTTACGCCGCATCCGcc                                                                        <  1:2175063/100‑1 (MQ=37)
                             gAACATCATGATGTACATGATGATTTCGTTAATTCCCATCGCCTTTACTCCCTGTTAGTTGTTATTTATTGGCGGATAAGGCGTTTACGCCGCATCCGcc                                                                        <  2:1537106/100‑1 (MQ=37)
                              aaCATCATGATGTACATGATGATTTCGTTAATTCCCATCGCCTTTACTCCCTGTTAGTTGTTATTTATTGGCGGATGCGGCGTAAACGCCTTATCCGccc                                                                       <  2:486786/100‑1 (MQ=255)
                               aCATCATGATGTACATGATGATTTCGTTAATTCCCATCGCCTTTACTCCCTGTTAGTTGTTATTTATTGGCGGATGCGGCGTAAACGCCTTATCCGCCCt                                                                      >  2:2561727/1‑100 (MQ=255)
                                catcatGATGTACATGATGATTTCGTTAATTCCCATCGCCTTTACTCCCTGTTAGTTGTTATTTATTGGCGGATGCGGCGTAAACGCCTTATCCGCCCt                                                                      >  1:725450/1‑99 (MQ=255)
                                catcatGATGTACATGATGATTTCGTTAATTCCCATCGCCTTTACTCCCTGTTAGTTGTTATTTATTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTa                                                                     <  2:2534239/100‑1 (MQ=255)
                                catcatGATGTACATGATGATTTCGTTAATTCCCATCGCCTTTACTCCCTGTTAGTTGTTATTTATTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTa                                                                     >  1:1296008/1‑100 (MQ=255)
                                  tcatGATGTACATGATGATTTCGTTAATTCCCATCGCCTTTACTCCCTGTTAGTTGTTATTTATTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACa                                                                   >  2:2310531/1‑100 (MQ=255)
                                  tcatGATGTACATGATGATTTCGTTAATTCCCAGCGCCTTTACTCCCTGTTAGTTGTTATTTATTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACa                                                                   <  1:364790/100‑1 (MQ=255)
                                       tacatcATGATGATTTCGTTAATTCCCATCGCCTTTACTCCCTGTTAGTTGTTATTTATTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGc                                                              >  2:2587898/6‑100 (MQ=255)
                                       atgTACATGATGATTTCGTTAATTCCCATCGCCTTTACTCCCTGTTAGTTGTTATTTATTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGc                                                              <  1:617187/100‑1 (MQ=255)
                                       atgTACATGATGATTTCGTTAATTCCCATCGCCTTTACTCCCTGTTAGTTGTTATTTATTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGc                                                              <  1:2552721/100‑1 (MQ=255)
                                        tgTACATGATGATTTCGTTAATTCCCATCGCCTTTACTCCCTGTTAGTTGTTATTTATTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCa                                                             >  2:1163755/1‑100 (MQ=255)
                                        tgTACATGATGATTTCGTTAATTCCCATCGCCTTTACTCCCTGTTAGTTGTTATTTATTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCa                                                             <  2:1246570/100‑1 (MQ=255)
                                          tACATGATGATTTCGTTAATTCCCATCGCCTTTACTCCCTGTTAGTTGTTATTTATTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAAt                                                           >  1:1901706/1‑100 (MQ=255)
                                               gatgatTTCGTTAATTCCCATCGCCTTTACTCCCTGTTAGTTGTTATTTATTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCCGt                                                      >  1:1622836/1‑100 (MQ=255)
                                               gatgatTTCGTTAATTCCCATCGCCTTTACTCCCTGTTAGTTGTTATTTATTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCCGt                                                      >  1:2218252/1‑100 (MQ=255)
                                                   atgcgacgcttgccgcatcttatccagcctacgggattgcacatgtagGGCGGATGCGGCGTGAACGCCTTATCCGCCCTACATGTGCAATCCCGTAGGc                                                  >  2:2355049‑M1/49‑100 (MQ=255)
                                                   atTTCGTTAATTCCCATCGCCTTTACTCCCTGTTAGTTGTTATTTATTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCCGTAGGc                                                  >  2:860395/1‑100 (MQ=255)
                                                    tttCGTTAATTCCCATCGCCTTTACTCCCTGTTAGTTGTTATTTATTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCCGTAGGCt                                                 >  2:105340/1‑100 (MQ=255)
                                                    tttCGTTAATTCCCATCGCCTTTACTCCCTGTTAGTTGTTATTTATTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCCGTAGGCt                                                 >  2:1853301/1‑100 (MQ=255)
                                                      tCGTTAATTCCCATCGCCTTTACTCCCTGTTAGTTGTTATTTATTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCCGTAGGCTgg                                               >  2:955266/1‑100 (MQ=255)
                                                      tCGTTAATTCCCATCGCCTTTACTCCCTGTTAGTTGTTATTTATTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCCGTAGGCTgg                                               <  2:2010967/100‑1 (MQ=255)
                                                      tCGTTAATTCCCATCGCCTTTACTCCCTGTTAGTTGTTATTTATTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCCGTAGGCTgg                                               <  1:1853293/100‑1 (MQ=255)
                                                         ttAATTCCCATCGCCTTTACTCCCTGTTAGTTGTTATTTATTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCCGTAGGCTGGATa                                            >  2:2709607/1‑100 (MQ=255)
                                                           aaTTCCCATCGCCTTTACTCCCTGTTAGTTGTTATTTATTGGCGGATGCGGCGTAAACGCCTGATCCGCCCTACATGTGCAATCCCGTAGGCTGGAGAAg                                          <  1:523941/100‑1 (MQ=255)
                                                              tCCCATCGCCTTTACTCCCTGTTAGTTGTTATTTATTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCCGTAGGCTGGATAAGAcg                                       <  2:1486478/100‑1 (MQ=255)
                                                               cccATCGCCTTTACTCCCTGTTAGTTGTTATTTATTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCCGTAGGCTGGATAAGAcgc                                      <  1:1629819/100‑1 (MQ=255)
                                                                 cATCGCCTTTACTCCCTGTTAGTTGTTATTTATTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCCGTAGGCTGGATAAGACGCgg                                    >  2:395724/1‑100 (MQ=255)
                                                                 cATCGCCTTTACTCCCTGTTAGTTGTTATTTATTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCCGTAGGCTGGATAAGACGCgg                                    >  1:2882686/1‑100 (MQ=255)
                                                                 cATCGCCTTTACTCCCTGTTAGTTGTTATTTATTGGCGGATGCGGCGTAAACGCCTTATACGCCCTACATGTGCAATCCCGTAGGCTGGATAAGACGCgg                                    <  1:536594/100‑1 (MQ=255)
                                                                  aTCGCCTTTACTCCCTGTTAGTTGTTATTTATTGGCGGATGCGGCGTAACCGCCTTATCCGCCCTACCTGTGCAATCCCGTAGGCTGGATAAgctgcgac                                   >  1:1671794/1‑93 (MQ=21)
                                                                  aTCGCCTTTACTCCCTGTTAGTTGTTATTTATTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCCGTAGGCTGGATAAGACGCGGc                                   <  2:2458365/100‑1 (MQ=255)
                                                                     gCCTTTACTCCCTGTTAGTTGTTATTTATTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCCGTAGGCTGGATAAGACGCGGCAAg                                <  2:1917636/100‑1 (MQ=255)
                                                                     gCCTTTACTCCCTGTTAGTTGTTATTTATTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCCGTAGGCTGGATAAGACGCGGCAAg                                <  2:1071323/100‑1 (MQ=255)
                                                                     cttatccagcctacgggattgcacatgtagGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCCGTAGGCTGGATAAGACGCGGCAAg                                >  2:2780199‑M1/31‑100 (MQ=255)
                                                                      ccTTTACTCCCTGTTAGTTGTTATTTATTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCCGTAGGCTGGATAAGACGCGGCAAGc                               >  1:46550/1‑100 (MQ=255)
                                                                      ccTTTACTCCCTGTTAGTTGTTATTTATTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCCGTAGGCTGGATAAGACGCGGCAAGc                               >  1:2328328/1‑100 (MQ=255)
                                                                          tACTCCCTGTTAGTTGTTATTTATTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCCGTAGGCTGGATAAGATGCGGCAAGCGTCg                           <  2:2187601/100‑1 (MQ=255)
                                                                          tACTCCCTGTTAGTTGTTATTTATTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCCGTAGGCTGGATAAGACGCGGCAAGCATCg                           >  2:212672/1‑100 (MQ=255)
                                                                             tCCCTGTTAGTTGTTATTTATTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCCGTAGGCTGGATAAGACGCGGCAAGCGTCGCAt                        >  2:612326/1‑100 (MQ=255)
                                                                              cccTGTTAGTTGTTATTTATTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAGTCCCGGAGGCTGGATAAGACGCGGCAAGCGTCGCATc                       >  1:1956701/1‑100 (MQ=255)
                                                                              cccTGTTAGTTGTTATTTATTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCCGTAGGCTGGATAAGACGCGGCAAGCGTCGCATc                       >  2:571885/1‑100 (MQ=255)
                                                                               ccTGTTAGTTGTTATTTATTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCCGTAGGCTGGATAAGACGCGGCAAGCGTCGCATcc                      >  1:912958/1‑100 (MQ=255)
                                                                               ccTGTTAGTTGTTATGTATTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCCGTAGGCTGGATAAGACGCGGCAAGCGTCGCATcc                      <  2:2857780/100‑1 (MQ=255)
                                                                                 tGTTAGTTGTTATTTATTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCCGTAGGCTGGATAAGACGCGGCAAGCGTCGCATCCgg                    >  2:273796/1‑100 (MQ=255)
                                                                                  gTTAGTTGTTATTTATTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCCGTAGGCTGGATAAGACGCGGCAAGCGTCGCATCCGGc                   <  1:950272/100‑1 (MQ=255)
                                                                                  gTTAGTTGTTATTTATTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCCGTAGGCTGGATAAGACGCGGCAAGCGTCGCATCCGGc                   >  1:687186/1‑100 (MQ=255)
                                                                                  gTTAGTTGTTATTTATTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCCGTAGGCTGGATAAGACGCGGCAAGCGTCGCATCCGGc                   >  2:2372726/1‑100 (MQ=255)
                                                                                    tAGTTGTTCTGTATTGGCGGATGCGGCGTAAACTCCTTGTCCGCCCTACATGTGCAATCCCGGAGACTGGATAAGACGCGGCAAGCGTccgctccgg                    >  1:1904839/1‑89 (MQ=14)
                                                                                      gttgttATTTATTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCCGTAGGCTGGATAAGACGCGGCAAGCGTCGCATCCGGCAAtn               <  2:87/100‑2 (MQ=255)
                                                                                       ttgttATTTATTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCCGTAGGCTGGGTAAGACGCGGCAAGCGTCGCATCCGGCAATTg              >  2:1894948/1‑100 (MQ=255)
                                                                                        tgttATTTATTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCCGTAGGCTGGATAAGACGCGGCAAGCGTCGCATCCGGCAATTg              >  1:1045731/1‑99 (MQ=255)
                                                                                        tgttATTTATTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCCGTAGGCTGGATAAGACGCGGCAAGCGTCGCATCCGGCAATTGc             <  2:2209771/100‑1 (MQ=255)
                                                                                          ttatttatTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCCGTAGGCTGGATAAGACGCGGCAAGCGTCGCATCCGGCGATTGCa            >  1:15386/1‑99 (MQ=255)
                                                                                          ttatttatTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCCGTAGGCTGGATAAGACGCGGCAAGCGTCGCATCCGGCAATTGCAc           <  2:69457/100‑1 (MQ=255)
                                                                                           tatttattGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCCGTAGGCTGGATAAGACGCGGCAAGCGTCGCATCCGGCAATTGCAcc          >  2:634728/1‑100 (MQ=255)
                                                                                             tttattGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCCGTAGGCTGGATAAGACGCGGCAAGCGTCGCATCCGGCAATTGCACcgc        <  2:1391687/100‑1 (MQ=255)
                                                                                              ttattGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCCGTAGGCTGGATAAGACGCGGCAAGCGTCGCATCCGGCAATTGCACcgcg       <  1:821090/100‑1 (MQ=255)
                                                                                               gtagGGCGGATAAGGCGTTTACGCCGCATCCGCCCTACATGTGCAATCCCGTAGGCTGGATAAGACGCGGCAAGCGTCGCATCCGGCAATTGCACCgcgc      <  1:2171913‑M1/96‑1 (MQ=255)
                                                                                                attGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCCGTAGGCTGGATAAGACGCGGCAAGCGTCGCATCCGGCAATTGCACCGCGcc     <  2:2641856/100‑1 (MQ=255)
                                                                                                  tGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCCGTAGGCTGGATAAGACGCGGCAAGCGTCGCATCCGGCAATTGCACCGCGCCAc   >  2:2075174/1‑100 (MQ=255)
                                                                                                   GGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCGCGTAGGCTGGATAAGACGCGGCAAGCGTCGCATCCGGCAATTGCACCGCGCCACt  <  1:1146427‑M1/100‑1 (MQ=255)
                                                                                                   |                                                                                                   
ATCCTGTCTACGGCAGCTATCAGCATAAAGAACATCATGATGTACATGATGATTTCGTTAATTCCCATCGCCTTTACTCCCTGTTAGTTGTTATTTATTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCCGTAGGCTGGATAAGACGCGGCAAGCGTCGCATCCGGCAATTGCACCGCGCCACT  >  NC_000913/2568040‑2568238

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.