New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 2835148NA (NA)10 (0.100) 6/164 NT NA noncoding (82/82 nt) REP195 (repetitive extragenic palindromic) element; contains 2 REP sequences REP195 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 = 4317969 NA (NA)noncoding (53/83 nt) REP323 (repetitive extragenic palindromic) element; contains 2 REP sequences REP323 (repetitive extragenic palindromic) element; contains 2 REP sequences

Only 100 of 187 total aligned reads displayed.

GGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCTAACCAACGCGCCGCAGCAATAACCCCCTGCCCCAGAGACAAACCGCCATC  >  NC_000913/2835049‑2835247
                                                                                                   |                                                                                                   
ggCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATGCGGCGTAAACGCCTTATCCGGC                                                                                                     <  1:2332434‑M1/100‑1 (MQ=255)
 gCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCa                                                                                                    >  1:2177702/1‑100 (MQ=255)
 gCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCa                                                                                                    >  1:1054094/1‑100 (MQ=255)
  cTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCaa                                                                                                   >  1:2060272/1‑100 (MQ=255)
   tACTGTGCCTAAAATGTCGGATGCGACGCTGGTGCGTCTTATACGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAt                                                                                                  <  1:2047054/100‑1 (MQ=255)
    aCTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATg                                                                                                 <  1:147178/100‑1 (MQ=255)
    aCTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGGCaa                                                                                                   >  2:2718047/1‑98 (MQ=255)
      tgtgCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGgt                                                                                               >  1:1146088/1‑100 (MQ=255)
       gtgCCGAAAACGTCGGATGCGACTCGGGCGCGTCTTATCCGTCGTACCGTGCCCCAGGTCCGGTCCCGATAAGGCGTTTACTCCGCATCCGGCAATg                                                                                                 <  1:1110583/97‑1 (MQ=12)
        tgCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGgtgt                                                                                             >  1:105970/1‑100 (MQ=255)
         gCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTc                                                                                            >  1:534519/1‑100 (MQ=255)
         gCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTc                                                                                            >  2:2126244/1‑100 (MQ=255)
          ccTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTcc                                                                                           >  1:1452473/1‑100 (MQ=255)
          ccTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTcc                                                                                           >  1:1228825/1‑100 (MQ=255)
            tAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGAGACGCATGTGTAGGCCGGATAAGGCGTTTAGGACGCATCCGGCAAGGGTGTCCaa                                                                                         >  1:1889371/1‑100 (MQ=18)
             aaaaTGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCaaa                                                                                        <  1:2672755/100‑1 (MQ=255)
             aaaaTGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCaaa                                                                                        >  1:1119033/1‑100 (MQ=255)
               attGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATg                                                                                      <  1:2751663/98‑1 (MQ=255)
                  gTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCaa                                                                                   >  2:2114121/1‑100 (MQ=255)
                   tCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAac                                                                                  <  2:1484023/100‑1 (MQ=255)
                   tCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAac                                                                                  >  2:968660/1‑100 (MQ=255)
                      gATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACCCg                                                                               >  1:274504/1‑100 (MQ=255)
                      gATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACg                                                                               <  2:532266/100‑1 (MQ=255)
                         gCGACGCTGGCGCGTCTTATCCGACCGACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGttt                                                                            <  2:1511532/100‑1 (MQ=255)
                          cgtcGCTGGCGCGTCTTATCCGTCCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTCCGCCGCATCCGGCAATGGTGTCCAAATGCAACACGttt                                                                            <  1:1814982/96‑1 (MQ=255)
                          cGACGCTGGAGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGtttt                                                                           >  1:2688524/1‑100 (MQ=255)
                           gACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTa                                                                          <  2:29298/100‑1 (MQ=255)
                             cGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATc                                                                        <  2:2680311/100‑1 (MQ=255)
                             cGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATc                                                                        <  1:1321348/100‑1 (MQ=255)
                             cGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATc                                                                        <  1:2663991/100‑1 (MQ=255)
                              gCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATcc                                                                       >  2:767081/1‑100 (MQ=255)
                               cTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCg                                                                      >  2:1657596/1‑100 (MQ=255)
                                tGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGt                                                                     >  2:305722/1‑100 (MQ=255)
                                 ggCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGtt                                                                    >  2:1545331/1‑100 (MQ=255)
                                     cgtcgcaTCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTgg                                                                <  2:532647/94‑1 (MQ=255)
                                     cgTCTTATCCGCCCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTgg                                                                <  2:2318147/100‑1 (MQ=255)
                                     cgTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTg                                                                 >  2:2148798/1‑99 (MQ=255)
                                      gTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGa                                                               >  1:19474/1‑100 (MQ=255)
                                        cTTATCCGACATACGGGGACGCATGTGTAGGCCGGATAAGTCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACt                                                             <  2:336481/100‑1 (MQ=255)
                                         ttATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACtt                                                            >  2:403935/1‑100 (MQ=255)
                                          tATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTc                                                           <  2:457468/100‑1 (MQ=255)
                                          tATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTc                                                           >  1:1634392/1‑100 (MQ=255)
                                          tATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTc                                                           >  1:2712246/1‑100 (MQ=255)
                                          tATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTc                                                           <  2:1987078/100‑1 (MQ=255)
                                          tATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTc                                                           <  1:256718/100‑1 (MQ=255)
                                           aTCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCa                                                          >  2:2288702/1‑100 (MQ=255)
                                           aTCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCa                                                          >  2:1555065/1‑100 (MQ=255)
                                            tCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCAc                                                         <  1:2460523/100‑1 (MQ=255)
                                                 ccTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTATGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCt                                                    <  1:1586925/100‑1 (MQ=255)
                                                    aCGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCTAAc                                                 >  2:161183/1‑100 (MQ=255)
                                                     cGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCTAAcc                                                <  2:2640560/100‑1 (MQ=255)
                                                     cGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCTAAcc                                                <  2:2814221/100‑1 (MQ=255)
                                                        ggACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCTAACCa                                               <  1:1767276/98‑1 (MQ=255)
                                                          aCGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCTAACCAAcgc                                           >  1:741540/1‑100 (MQ=255)
                                                           cGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCTAACCAAcgcg                                          >  1:2391720/1‑100 (MQ=255)
                                                            gCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCctacaaatgcgctccccgtaggtcggataagacgcgtcagcgtcgcatccgacacccgaa                                         >  2:2153882‑M1/1‑40 (MQ=255)
                                                             cATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCTAACCAACGcgcc                                        >  1:780782/1‑100 (MQ=255)
                                                             cATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCTAACCAACGcgcc                                        >  1:1737004/1‑100 (MQ=255)
                                                             cATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCTAACCAACGcgcc                                        >  1:1332149/1‑100 (MQ=255)
                                                               tgtgTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCTAACCAACGcgccgc                                      >  2:1935053/1‑100 (MQ=255)
                                                                gtgtAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCTAACCAACGCGCCgca                                     >  2:1837594/1‑100 (MQ=255)
                                                                 ccattgCCGGATGCGGCGTAAACGCATTATCCGGCAATGGGGTCCAAATGCAAAACGTTTCACCCGTTCAGGCCTCCACCCGCTAACCAACGCCACgca                                     >  1:462698/6‑99 (MQ=9)
                                                                  gtAGGCCGGATAAGACGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCTAACCAACGCGCCgcagc                                   <  1:83010/100‑1 (MQ=255)
                                                                   tAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCTAACCAACGCGCCgcagca                                  <  2:1033782/100‑1 (MQ=255)
                                                                   tAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCTAACCAACGCGCCgcagca                                  <  1:403933/100‑1 (MQ=255)
                                                                   tAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCTAACCAACGCGCCgcagca                                  <  2:2094466/100‑1 (MQ=255)
                                                                    aGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCTAACCAACGCGCCGCAGCaa                                 >  1:1417346/1‑100 (MQ=255)
                                                                    aGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCTAACCAACGCGCCGCAGCaa                                 >  1:49133/1‑100 (MQ=255)
                                                                    aGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCTAACCAACGCGCCGCAGCaa                                 >  2:1821130/1‑100 (MQ=255)
                                                                       ccGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCTAACCAACGCGCCGCAGCAATaa                              >  1:1275607/1‑100 (MQ=255)
                                                                        cGGATAAGGCGTTTACGCCGCATCCGGCctacaaatgcgctccccgtaggtcggataagacgcgtcagcgtcgcatccgacacccgaaccacgaggcgaa                             >  2:883780‑M1/1‑28 (MQ=255)
                                                                         ggATAAGGCGTTTACGCCGCATCCGGCctacaaatgcgctccccgtaggtcggataagacgcgtcagcgtcgcatccgacacccgaaccacgaggcgaaa                            >  1:356019‑M1/1‑27 (MQ=255)
                                                                         ggATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCTAACCAACGCGCCGCAGCAATAAcc                            <  1:449995/100‑1 (MQ=255)
                                                                          gATAAGGCGTTTACGCCGCATCCGGCctacaaatgcgctccccgtaggtcggataagacgcgtcagcgtcgcatccgacacccgaaccacgaggcgaaaa                           >  2:2515657‑M1/1‑26 (MQ=255)
                                                                            tAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCTAACCAACGCGCCGCAGCAATAAccccc                         <  2:1389027/100‑1 (MQ=255)
                                                                              aGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCTAACCAACGCGCCGCAGCAATAACCCCCTg                       >  2:2588558/1‑100 (MQ=255)
                                                                               ggCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCTAACCAACGCGCCGCAGCAATAACCCCCTGc                      >  1:217237/1‑100 (MQ=255)
                                                                                 cGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCTAACCAACGCGCCGCAGCAATAACCCCCTGccc                    >  2:1673885/1‑100 (MQ=255)
                                                                                   tttACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCTAACCAACGCGCCGCAGCAATAACCCCCTGCCCCa                  >  2:345342/1‑100 (MQ=255)
                                                                                     tACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCTAACCAACGCGCCGCAGCAATAACCCCCTGCCCCaga                >  2:1918089/1‑100 (MQ=255)
                                                                                      aCGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCTAACCAACGCGCCGCAGCAATACCCCCCTGCCCCagag               <  1:708610/100‑1 (MQ=255)
                                                                                       cgccgcATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCTAACCAACGCGCCGCAGCAATAACCCCCTGCCCCAgaga              >  2:1213122/1‑100 (MQ=255)
                                                                                       cgccgcATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCTAACCAACGCGCCGCAGCAATAACCCCCTGCCCCAgaga              <  2:878156/100‑1 (MQ=255)
                                                                                       cgccgcATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCTAACCAACGCGCCGCAGCAATAACCCCCTGCCCCAgaga              <  2:1159077/100‑1 (MQ=255)
                                                                                       cgccgcATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCTAACCAACGCGCCGCAGCAATAACCCCCTGCCCCAgaga              <  2:1787670/100‑1 (MQ=255)
                                                                                       cgccgcATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCTAACCAACGCGCCGCAGCAATAACCCCCTGCCCCAgaga              <  2:1982407/100‑1 (MQ=255)
                                                                                        gccgcATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCTAACCAACGCGCCGCAGCAATAACCCCCTGCCCCAGAGAc             >  1:2554967/1‑100 (MQ=255)
                                                                                        cttccgatctgCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCTAACCAACGCGCCGCAGCAATAACCCCCTGCCCCAGAGAc             <  2:1349946/90‑1 (MQ=255)
                                                                                           gcATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCTAACCAACGCGCCGCAGCAATAACCCCCTGCCCCAGAGACaaa          <  2:2227997/100‑1 (MQ=255)
                                                                                            cATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCTAACCAACACGCCGCAGCAATAACCCCCTGCCCCAGAGACAAAc         >  2:2074248/1‑100 (MQ=255)
                                                                                             aTCCGGCctacaaatgcgctccccgtaggtcggataagacgcgtcagcgtcgcatccgacacccgaaccacgaggcgaaaaatgattaacgtacaaaacg        >  2:2787219‑M1/1‑7 (MQ=255)
                                                                                              tCCGGCctacaaatgcgctccccgtaggtcggataagacgcgtcagcgtcgcatccgacacccgaaccacgaggcgaacaatgattcacgtacaaaacgt       >  1:2824758‑M1/1‑6 (MQ=255)
                                                                                               ccGGCctacaaatgcgctccccgtaggtcggataagacgcgtcagcgtcgcatccgacacccgaaccacgaggcgaaaaatgattaacgtacaaaccgtc      >  2:629382‑M1/1‑5 (MQ=255)
                                                                                               ccGGCctacaaatgcgctccccgtaggtcggataagacgcgtcagcgtcgcatccgacacccgaaccacgaggcgaaaaatgattaacgtacaaaacgtc      >  2:2401153‑M1/1‑5 (MQ=255)
                                                                                                cGGCctacaaatgcgctccccgtaggtcggataagacgcgtcagcgtcgcatccgacacccgaaccacgaggcgaaaaatgattaacgtacaaaacgtca     <  1:620536‑M1/100‑97 (MQ=255)
                                                                                                 ggCctacaaatgcgctccccgtaggtcggataagacgcgtcagcgtcgcatccgacacccgaaccacgaggcgaaaaatgattaacgtacaaaacgtcag    >  2:215005‑M1/1‑3 (MQ=255)
                                                                                                  gCctacaaatgcgctccccgtaggtcggataagacgcgtcagcgtcgcatccgacacccgaaccacgaggcgaaaaatgattaacgtacaaaacgtcagt   >  2:2563284‑M1/1‑2 (MQ=255)
                                                                                                  gCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCTAACCAACGCGCCGCAGCAATAACCCCCTGCCCCAGAGACagatcggaag   >  1:1349944/1‑91 (MQ=255)
                                                                                                   cctacaaatgcgctccccgtaggtcggataagatgcgtcagcgtcgcatccgacacccgaaccacgaggcgaaaaatgattaacgtacaaaacgtcagta  >  1:1744552‑M1/1‑1 (MQ=255)
                                                                                                   cAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCTAACCAACGCGCCGCAGCAATAACCCCCTGCCCCAGAGACAAACCGCCATc  >  2:689041/1‑100 (MQ=255)
                                                                                                   |                                                                                                   
GGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCTAACCAACGCGCCGCAGCAATAACCCCCTGCCCCAGAGACAAACCGCCATC  >  NC_000913/2835049‑2835247

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.